Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_06g0024580 | OGI:06075380 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr06:27878832-27886323 | ||||||||
| Gene Symbol | OsGL1-3 | ||||||||||
| DNA seq | ggtgaggtgacagagagagagagatctctccattcttcccaacccagcagttctagctagctagctatctagttcatcatccccatccaccgagctcgatatccctggccatggccatctccatgacctctcccttgtcttcttggccttgggcattcttaggctcatacaaggcaagcacacttgatcaactgctgcttcaattctttgtatatatatacatatcattgcaacaaacaattagtatatatgtgatataatgatgaactgatcatgaattcatgatatgcattagcaatggctgtttggctaattgatggatggattgtggatgatatatatgcagtatttgctgtacgggccggtggtggggaaggtggtgcaggagtggagggagcaagggaggttgccgctggggacgtcgtggtgcctccacctcatcctcctcctcgcgctccggtcgctcacctaccagctatggttctcctacggcaacatgctcttcttcacccgccgccgccgcgtcgtcgacgacggcatcgacttccgccagatcgacaccgagtgggactggtaattaataatagtagtagtagtaactttttttttacctccctctacttagttgattactgttctcgtttggctttttgtgatcgggtcatggttatacgctatctaaaaggtaccgtagatgattctctgtgtaagtactttgggtctctgtttataaacagcagcataacttcagcttttaattcttctttgaagtcgatcggtagtatttactgctcatgtccaagacagtagtaattgcagatagattcctcctggctaggaagctacaagtacgaccaaatgtaatggatgacccgtttcatcatgctatgaacacgaagctggtgtttagattatggatgtaaagttttggtgtgtcacatcagatattatatacggtgtcgtatgtggtattcgggtactaataaaaaaaaactaattacataatccattaataaactgcgagacaaatttattaaacctaattaatatattattagcaaatatttactgtaataccgtattgtcaaatcatatagtaattaggcttaaaaatttgtctcgcaaattagtcgtaatctatacaattagttattttttagcctatatttaataattcatacagatgttcaaacgctcgatgtgacatgcgaaagtatgatgctgcctacaggccggctatgattaattggctagccgactcacacatatctacagtttacatatatactttaaaccgctaggaataaatatataaatgttctattaacatctttttcatgtatttctctacgtcttatcgaccttaactcaaccaaaccaaacacaggcttaataaagtctgaatggaggaccagccaattaatgaaaattaagtttcggtttaatctattatactcatatagtagtatagttagctcctttttgggtttagatgtgccatgaggcccatgatatatatggtgtatcaaattatgcatatatcccggtccatagcttaagaccatgaagtgttgaagaccatatcacgattggaggttgggagtaaatgctcgcgcaataactccatctgcatttcggtggccgtgttggtctcgattgcgaagtgagcgagcgagtaccagtagcagcatgtcgtaacgtggtgccattcaaagcgcacgagatcacggacatgtggcacgtggattcaatggcaaattatttatcaccatttataagagtggaaaataattaattattcatcgacacatcacaccacgcttgcttttgctaatgcaccttgacaaaccataaaccatgtacaatttgctcctacctccgtcacaaaatattactactatgtagaacgggtcaacagatctatatgaaatcttcgttcacaatcgttgttttaggatgagtcaaaatattcgttgttattctatctcaaaatattctagactacaaaactcaccatcattgtatcgttgttgtcggatctcctctagtgaacgaagagagttcaacttatctacgatggttgaatgccacttccatgctcttattatctcaaaaaatatatatgtaaatcatgtatgatattatcccattttgattgttatcattaatgtgatgtgagatatctttgagtctgtcatttaatttggatgatcttttttttttcagggataacatggtgatcatgcaaaccctaatcgcggcggtgctggtcaccagccgtgtcttccctgccacgtcggatctctcggcgtgggacctacgtgggtgggccatcgctgtggtgctgcacgtggccgtttcagagccggccttctactgggcccaccgggccctccatctgggcccactcttcagccggtaccactccttgcaccactccttccaagccacccaagctctcacaggtaacaataataccctgaaattaaagctctcttcgtacagctccaactcctaaatataactccagaacttgagtctagagtggagttatgaagaagagctctacccaactccactcttaattttggtggagctgaaactgtttggctgagctcagctatgccaaacagcccctaattttcatctacaaactttattaattactccctccatattttaatgaatgacgccgttgactttttaatcaacgtttgatcactcgtcttattcaaaaattttatgcaaatataaaaatacttatatcatgcttaaagaacatttgatgataaatcaagtcacaataaaataaattctaattatacaaattttttgaataagacgaaaggtcaaacgtttgtcaaaaagtcaacggcgtcatacattaaaatatggagggagtacttattagcgtctaatttcattttgggagtacctatacatctttcgaaatacttttatgattgtatcacacagatttttaatctttagattaaaatatgatagatataataaaaagtaaaaagtaattaagaaacaccataatggacactaaattaccatatcctcaagaaaaagaccaaatcaaatacaaaatttaaaatttacatgcgaagattcaaaaattacagtgtaacttataaaagttacagtgtaagtttcataaattacactataacttacaagagtacagaaaaatacactgtaaatttgagtgagaaaatcgagtgaaaaatctttcgagtgagatatagcaagatcgtttcgtttttaatgatgtgtttaattaactgcttgattaatgcagctgggttcgtgacgccattggagagcctgatcctgacgctggtggcgtgggccccacttgcaggggccttcatggcgggacacggctccgtgagcctggtctatggacacatcctcctcttcgactacctccggtccatggggtacagcaacgtcgaggtcatctcacacaagaccttccaggattttccctttctcagatacctcatctacacaccatcgtgagtcctctaatttacatactattcataatatcatccaaactgatccactatgttcccttacctcgctccactaatttatatttattcaaattaggccatatttgatttaaactattaaacagattgttgacaaattaaatatttcaaaaaataaatttaacagtagcttaaaacaagttgtctaaataataggcttcttttcttgaaaaaaatattttgtgaagtgcaaagcaaacaatttgttaaaatatatagtctggtgaataataagctaattaagacaacaggacaaacaTttttagtagatatttagtacaatatgtgtgtagtgtgttgtgcgcattctacaccctttattttccataccatatactccgtatttaaaaacttaataggtaccatatgtacagtactttcaatacgaatccggtagggaaaaaacatacggtatatatttttcctttattttacatatgtacttcgtacttattagcagcgtattttcttaattaacaccatttaatgtcgcatgctcccgtgcacgcgtctggatagaggccgatatgtgtacagagcgacatgtccagtgcactatagtcgaaggcaccaagtcatatatctgtatgtggtgtcaccatgcaattaactcgaaaaagattgcacttagacagcacaaaaatataccaaaaactgccaaattaattgaagtgtcacgcccattggccaactaCccccaatttatggtgaccggtgtggcgtccactgtcatgtgtcgactttaattagttatattaaggcatctctggataaaacatataatttctgtttccaaaattgtcaacgaattaatcaagttgtcgcagtgatgcgaagttcttgcatttccaaaaaaggccttgcttgcatgagaaataaaaagattgatactatgaaacattgaagtaaatgaataatggactatcagattttgtaatattatctactcgagggtccaaacaagtgcatattgtaaggttcaaaagtttttttttttaaaaaaaagaactaacgagcttatatatagaaatcataggagctaaggaagtgtgtccactatgcattttattactgtatgagagtcacattgttggagcatatatcactttccaatttggaatactcctatatatatatgtcgtggtcatctaaagcgaatgttatcgatcctgtcctggttaacgaatggatcaggtatcccttaaaccagtgactgcattaatagccaggtttgacgagaatggccatatgatttataaccctaatcattgctgctgtgtactggaaactgataatcaatgctcgtgataaactgatggagtactaatcaagtggtcaaatgatttaatttttctctaatcaggtgagtcactgtgcatgaacagagcagcttagatagggatgggctagtggttgacaggaattaattaagaagttgaaaccattgtagggaggtcttggagacatgatttgcaatttggaacccggactgacgtgacttttgtgtccatttcgacgatattcctagaaattaagactgctgctaattaatcctgtggatgcttgtggtgatgtgtgcaggtatcttagcctacaccacagggagaaggactccaatttctgcctgttcatgcctctctttgatgccctgggaggtaccctcaaccccaagtcttggcagcttcagaaggaggttgacctaggtattagctactctctctattctaaaatatcacaatctacttcctcgaaaaaaaaaaacaatctactatcaaattggatataacgtagtactataatttagacagagagtttatccataacccagattgaacttaaaaatcgatgaccgtgtgtctgattgaattgaagaactaattagttcgaatcatattttttaatttctgtaggaaagaaccatcgggtgccggactttgtgttcctggtgcacgtggtggacgtggtgtcgtcgatgcacgtgccattcgcgttccgcgcgtgcagctcgctgccgttcgcgacgcacctcgtccttctcccgctctggcccatcgccttcggcttcatgctcctccagtggttctgctccaagaccttcactgtcagcttctataagctccgcggcttcctccaccagacctggagcgtgccccgctacggcttccaggtcacacgtttcatccaagcctcaaggctgatttccatttgaactggttagtgcatgcaacttatcgttttattttttgtaatgtcctgcagtatttcatcccttcggcgaagaagggcatcaatgagatgatcgagctcgcgatcctgagggcggacaagatgggcgtcaaagtgctcagccttgctgcactcaacaaggtgagtaatagcatcatacggattcgattaattagctactcataattgcgtaccgatcgtactagctgcacttcgtactgcgttgtgagtgatgggttgatgtaattaagctgcttgcaagtgcaagcatgttggttgtcttcctctagtaggacaaagtcaagtgcagactgtgcagtgttagtaggttgttgttagctatagctcgattaattcctttatgacacgcatgtggccgtgccattctggtactgtgtccatacagcgactgaactttgggcgagtcgtagtatgcaggtagtacaagtgaacaccaatgtcccaatgattctgtttgtgataaattcttgattctgggtaggtagctaaacgtcattggtttgtactgtgtactactcttagcaacgtggttataatggtttcttgtcagatgtcactgaatttgacggcaggaaagttcagtgaaagatcgaattaactgaaactgtagtgagtaattcttttgtgtgtgtgtgcgctcgacagaatgaggcgctcaatgggggtggcacgctgttcgtccgcaagcatcccgacctgcgggtgagggtggtgcacggcaacaccctgacggcggcggtgatcctcaacgagatccccggcgacgtcgcggaggtgttcctcaccggcgcgacgtcgaagctcggcagagccatcgctctctacctctgcaggaagaagatcagagtcttggtacgttcatcagaagaatgctatagagagaatggaagtgattcagcttagcttactgtttttgtgtttgttttgttcagatgctgacactgtcaacggagaggttcatgaatattcagagggaggcccctgcggagttccagcagtatctggtccaggtcaccaagtaccaggctgcacagaattgcaaggtagtacgtacgtaaaatataattgaactggtcggtgcatacaactcaatcatgatgtcttacgacggcgatgtcggtcgtcgcagacgtggatcgtggggaagtggctgtcgccgagggagcagcggtgggcgccggcggggacgcacttccaccagttcgtggtgccgccgatcatcgggttccggcgggactgcacgtacgggaagctcgccgcgatgaggctgccggaggacgtggaggggctggggacgtgcgagtacaccatgggccgcggcgtcgtgcacgcgtgccacgccggcggcgtcgtccacttcctggaggggtgggaccaccacgaggtcggcgccatcgacgtcgaccggatcgacgccgtctggaacgccgcgctcaggcacggcctcacgccggcgtgaacgccggcgacggcgacggcggctagtagtaactacgtacagcacggggacgccgaataactttcgtgttgtgcgtgtgtgtcgatcgattgtacgttgcattgttcgctcgcccggctagcttaattaattatcgggcgtgcttgtgttgtgtgttgatagctagcgtcgtacgtaagaataccgcagaaatgacaagaaagaatggatgattcctcgt
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| CDS seq | atggccatctccatgacctctcccttgtcttcttggccttgggcattcttaggctcatacaagtatttgctgtacgggccggtggtggggaaggtggtgcaggagtggagggagcaagggaggttgccgctggggacgtcgtggtgcctccacctcatcctcctcctcgcgctccggtcgctcacctaccagctatggttctcctacggcaacatgctcttcttcacccgccgccgccgcgtcgtcgacgacggcatcgacttccgccagatcgacaccgagtgggactgggataacatggtgatcatgcaaaccctaatcgcggcggtgctggtcaccagccgtgtcttccctgccacgtcggatctctcggcgtgggacctacgtgggtgggccatcgctgtggtgctgcacgtggccgtttcagagccggccttctactgggcccaccgggccctccatctgggcccactcttcagccgcctgatcctgacgctggtggcgtgggccccacttgcaggggccttcatggcgggacacggctccgtgagcctggtctatggacacatcctcctcttcgactacctccggtccatggggtacagcaacgtcgaggtcatctcacacaagaccttccaggattttccctttctcagatacctcatctacacaccatcgtatcttagcctacaccacagggagaaggactccaatttctgcctgttcatgcctctctttgatgccctgggaggaaagaaccatcgggtgccggactttgtgttcctggtgcacgtggtggacgtggtgtcgtcgatgcacgtgccattcgcgttccgcgcgtgcagctcgctgccgttcgcgacgcacctcgtccttctcccgctctggcccatcgccttcggcttcatgctcctccagtggttctgctccaagaccttcactgtcagcttctataagctccgcggcttcctccaccagacctggagcaatgaggcgctcaatgggggtggcacgctgttcgtccgcaagcatcccgacctgcgggtgagggtggtgcacggcaacaccctgacggcggcggtgatcctcaacgagatccccggcgacgtcgcggaggtgttcctcaccggcgcgacgtcgaagctcggcagagccatcgctctctacctctgcaggaagaagatcagagtcttgatgctgacactgtcaacggagaggttcatgaatattcagagggaggcccctgcggagttccagcagtatctggtccagcggtgggcgccggcggggacgcacttccaccagttcgtggtgccgccgatcatcgggttccggcgggactgcacgtacgggaagctcgccgcgatgaggctgccggaggacgtggaggggctggggacgtgcgagtacaccatgggccgcggcgtcgtgcacgcgtgccacgccggcggcgtcgtccacttcctggaggggtgggaccaccacgaggtcggcgccatcgacgtcgaccggatcgacgccgtctggaacgccgcgctcaggcacggcctcacgccggcgtga
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| Protein seq | MAISMTSPLSSWPWAFLGSYKYLLYGPVVGKVVQEWREQGRLPLGTSWCLHLILLLALRSLTYQLWFSYGNMLFFTRRRRVVDDGIDFRQIDTEWDWDNMVIMQTLIAAVLVTSRVFPATSDLSAWDLRGWAIAVVLHVAVSEPAFYWAHRALHLGPLFSRLILTLVAWAPLAGAFMAGHGSVSLVYGHILLFDYLRSMGYSNVEVISHKTFQDFPFLRYLIYTPSYLSLHHREKDSNFCLFMPLFDALGGKNHRVPDFVFLVHVVDVVSSMHVPFAFRACSSLPFATHLVLLPLWPIAFGFMLLQWFCSKTFTVSFYKLRGFLHQTWSNEALNGGGTLFVRKHPDLRVRVVHGNTLTAAVILNEIPGDVAEVFLTGATSKLGRAIALYLCRKKIRVLMLTLSTERFMNIQREAPAEFQQYLVQRWAPAGTHFHQFVVPPIIGFRRDCTYGKLAAMRLPEDVEGLGTCEYTMGRGVVHACHAGGVVHFLEGWDHHEVGAIDVDRIDAVWNAALRHGLTPA |
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| Function | Very-long-chain aldehyde decarbonylase GL1-3 [UniProtKB/Swiss-Prot:Q67WQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_06g0024580 | OsKYG_06g0024580.01 | Chr06 | 27878832 | 27886323 | + | NAM | ||
| CDS seq | atggccatctccatgacctctcccttgtcttcttggccttgggcattcttaggctcatacaagtatttgctgtacgggccggtggtggggaaggtggtgcaggagtggagggagcaagggaggttgccgctggggacgtcgtggtgcctccacctcatcctcctcctcgcgctccggtcgctcacctaccagctatggttctcctacggcaacatgctcttcttcacccgccgccgccgcgtcgtcgacgacggcatcgacttccgccagatcgacaccgagtgggactgggataacatggtgatcatgcaaaccctaatcgcggcggtgctggtcaccagccgtgtcttccctgccacgtcggatctctcggcgtgggacctacgtgggtgggccatcgctgtggtgctgcacgtggccgtttcagagccggccttctactgggcccaccgggccctccatctgggcccactcttcagccgcctgatcctgacgctggtggcgtgggccccacttgcaggggccttcatggcgggacacggctccgtgagcctggtctatggacacatcctcctcttcgactacctccggtccatggggtacagcaacgtcgaggtcatctcacacaagaccttccaggattttccctttctcagatacctcatctacacaccatcgtatcttagcctacaccacagggagaaggactccaatttctgcctgttcatgcctctctttgatgccctgggaggaaagaaccatcgggtgccggactttgtgttcctggtgcacgtggtggacgtggtgtcgtcgatgcacgtgccattcgcgttccgcgcgtgcagctcgctgccgttcgcgacgcacctcgtccttctcccgctctggcccatcgccttcggcttcatgctcctccagtggttctgctccaagaccttcactgtcagcttctataagctccgcggcttcctccaccagacctggagcaatgaggcgctcaatgggggtggcacgctgttcgtccgcaagcatcccgacctgcgggtgagggtggtgcacggcaacaccctgacggcggcggtgatcctcaacgagatccccggcgacgtcgcggaggtgttcctcaccggcgcgacgtcgaagctcggcagagccatcgctctctacctctgcaggaagaagatcagagtcttgatgctgacactgtcaacggagaggttcatgaatattcagagggaggcccctgcggagttccagcagtatctggtccagcggtgggcgccggcggggacgcacttccaccagttcgtggtgccgccgatcatcgggttccggcgggactgcacgtacgggaagctcgccgcgatgaggctgccggaggacgtggaggggctggggacgtgcgagtacaccatgggccgcggcgtcgtgcacgcgtgccacgccggcggcgtcgtccacttcctggaggggtgggaccaccacgaggtcggcgccatcgacgtcgaccggatcgacgccgtctggaacgccgcgctcaggcacggcctcacgccggcgtga
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| Protein seq | MAISMTSPLSSWPWAFLGSYKYLLYGPVVGKVVQEWREQGRLPLGTSWCLHLILLLALRSLTYQLWFSYGNMLFFTRRRRVVDDGIDFRQIDTEWDWDNMVIMQTLIAAVLVTSRVFPATSDLSAWDLRGWAIAVVLHVAVSEPAFYWAHRALHLGPLFSRLILTLVAWAPLAGAFMAGHGSVSLVYGHILLFDYLRSMGYSNVEVISHKTFQDFPFLRYLIYTPSYLSLHHREKDSNFCLFMPLFDALGGKNHRVPDFVFLVHVVDVVSSMHVPFAFRACSSLPFATHLVLLPLWPIAFGFMLLQWFCSKTFTVSFYKLRGFLHQTWSNEALNGGGTLFVRKHPDLRVRVVHGNTLTAAVILNEIPGDVAEVFLTGATSKLGRAIALYLCRKKIRVLMLTLSTERFMNIQREAPAEFQQYLVQRWAPAGTHFHQFVVPPIIGFRRDCTYGKLAAMRLPEDVEGLGTCEYTMGRGVVHACHAGGVVHFLEGWDHHEVGAIDVDRIDAVWNAALRHGLTPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0653000 | RBH | 0.0 | 0.0 | 1.056604 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g44300 | RBH | 0.0 | 0.0 | 0.274665 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0653000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0024660 | RBH | 0.0 | 0.0 | 7.720953 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0024460 | RBH | 0.0 | 0.0 | 1.364175 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0024650 | RBH | 0.0 | 0.0 | 12.123708 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0024220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0024680 | RBH | 0.0 | 0.0 | 16.075882 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0419300 | RBH | 0.4263445 | 0.075194 | 12.4124715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0024190 | RBH | 0.0 | 0.0 | 2.511224 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0401300 | RBH | 0.6623805 | 0 | 39.761309 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0024610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005940 | RBH | 0.000000 | 1.103149 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0024250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0024850 | RBH | 0.0 | 0.0 | 2.185289 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0024490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G024320 | RBH | 0.0 | 0.0 | 3.915182 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0024470 | RBH | 0.0 | 0.0 | 7.375175 |
