Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKYG_01g0013400 OGI:01033580 | 16/16 KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) Chr01:11301611-11305503
Gene Symbol -
DNA seq

GACCAAATAAATTACCTCAAATTTGATTTAACATATTCGATCCCTTTGCACGGGATGACAAGACAGAAGCCTATGCAAGGTGTTCTCTTGAAAGGCCTTGTCTCTCGTTCTGCACGCAATTACTTCCTGTCCGAATGGCTTCTCCTGTTCACAAAGACTTATCCACAACACACTTGGGACTAGCATGCACATATCATTGTCAGGGCATCAAACTGATAGCACACTGACTACAAGAGATGGAAACAGCAACGATTCTGTAGTAGGATTCTTGCTTCAGTACTGTATGTCTGGAGAAGCCATTTCGTTCAGAAAGTAAGCAAAAAAGAAGTGTTGGAGAAAAGCCTCCTCAGACAAGACTACACGTTGCACTTTAAGAAAAAACCCTTTACCCTAGCATGCCTCTGCTTCTTGAAAAAAAAAGCAAGAAAAGGCTGGAACAGCATCCTAGCCATGAGGTATATCATCCTCTACATGGAGCAGTAGGAAGAAGGGAGAACAGTTCACTCAAACGAATCTGCTTTGTGCCGCTCGCCGAAGAATCACGTGTCACCGACAAAGTAAAATTACCGAGGATAAACATTTCAGCGTCCCTTGTCGGCAATCCTCTTGAGTAATTTCCCGATGCCATAGCATATCTCAATCTTATCTTCCTTGATCATTTGGCGGATCGAACGGCTTGTCTTGCCAGCCGCCAAGTAGGTCCGCAGGAGGGACTCATATGCCTTGCCATCAATGCATCCTGACGTTCTCAAGCAGTTGAGAAACCTTTCGGCACCTTCCACATCCTTGTGCTCTTCGAAATACTTCAAGAAACAGCTGATCTTCTCCTGATCTAGCTTCGATTTCTTCCTGGGAAGTTTGGTCATATTTTCAACCCAGTTCAAAGCAGAGGTCATGTCCCCTTTCCCCATGTAATGCTCTAGAAACAACTCACATGTTTTGGAATCAAATTCTGCACCTTTTTCCTTGACCTTCTCCCATAGTAATTCAGCTTCCTTGGTCAAGCCATTTCTTAGATGTGCTCGGGTCATCATATTTGTCAGCCTCGCATCATAATTTTCATAATTAGATTCCCAATCCTCATAAATCTGCTTCATGCGATCATCGTCATTGAGTTTATAAAGAGCTTGAAGCATGCCGAGGTAGCTGGTGTTAGTCACCTTCTGAAAATTAGCCTTTATCAGGTTCCACACTTTGTTGACCTCACTCAGATTGCCTACTGATGCATATAGGCTCATAAGGAAATCAAAAGGCTGCCTGCCAGCTTGAACATCGATGAGACTCTCGAGTTTCTTCAAAGCAGATTCCGCTTCTTCAACCATATTAGCATTCACATAGAGGGAAGCGAGTGTGCTATATGCAGACCACCCTAGAGCCACTTTTTTTTCTTCCATTTCTTTTAGAACCTCTCCAACAGTATCTATCTTGTTCAATGCTGCATAGCTACTCATCAGCAGGCAGCATGTGAGGTTATCCGGTTTAACATTCTTCACTTTCATCTCCTCAAACAGGCTTGTAACCTTCCTATGCTGGCCTATCTTCACGTAAAGAGACATCAGGTTGTTGATAGGAAGAGTACTGGATGAGATTCCTAGTTCGTCCATCTTGCGATAGATGTCTGTTGCTTTGTCTTCCATTTTAGCAGAGCAATAACAGTTCAAAAGTGCACCATAAGTTTTATGGTTCTTGCCTGGATCAGGGAGGCCAGCAAAGTATTGTTCTGCTGCTTCAATGCCACGCACTTTATAAATGAGATCCAAACGTATGGCATGGTTAGTGTATGACATGTTCATACCCTTAGTGTTAACCATCCATTCCATCAACTGCCAAAGAAATCAAGAAAAAAAATGTTGCATAAGCATAATAAACAAAAACCAATAACAGAAGTACATACAGACTGGTATGAAACAAGATATGTTGAGAAGTTCAGTACTACTAATCTTTTCAGACCTTGAGGATAACTGAGAATATAGTTGTAACAACATGCTATTATTTTTATTGCAATATAGGCAGAAAATATGTCCATTCATCTGCTTAACATGCTGAACAACATCTACCATGTCAAAAGCAGGCAGGTTTTCTTGCAAAAGAGTATGCTACATCATCTAAATGGAGTCAGTCAGTGAATTGGCAGGGAGAAAACACCAAGCCCACCATCCTGACCTTAAATGGCTTAAAAATCCCTAGACCCCAAAATATCTGGATAGTGCATTCCACCCCCTCTAACCTCCAATGCTGGTCTTCCCTGCGTCGCTACTAAACACAAGATGCAACCGCTTTCTCTCTACCGCAGGCACCTCTCTGCACCAAATATTCCTCTCGTGTTGCCAACCTCCCTGCACCATTCCCTCCCTCGAGTTCCTTTTATCCCCTCACATCTATGCACCATTCCATCCCCTTCCTTCCCCGCATCATTGCCATATCGGCACCACCTCCACCTTCTCACCACTCTTCGCTGCTTCTCTCCTCAGAGCTTCATCCATCCTCAGCCATTCGAAAGACAACAAGTGAAGGTTTGTTTTACAACTGGCATTGAAATCCCTCTGTAGGATCTACAGAGCTTATCAGTTTCATCTCCATGGTCATGCTATTCGATTAATTGTCATCTGGAACTGTTATGGTAATAATTTTGAAACAAGTTTTACAATATTTTGTTCTATGCTTGGACCTCTGGAAAATTCCATTCTACAGAACCAAAAGTCACATGGATGTAGGCTTATGAAACATATATGAATAAAATTTATGTCCATTCAGGGTCAATGACATATTTACGCTAGAAACACAGACATTGTAAAACAAAACCAGCATCCTGAGGTAACCACGCCATCGCACAGACAACTTGTGAGACAAAATTACATCTCAGGGGCGTAGGTAACCATATTTGGCAGCTGCAACTTGAAACTTGAAACAAAGAAAGCAAAAGAAGATAAGGCAAAATTTCCTCAAAAAATAAGGATATAAAGTGAATTGGGCCTAGCACACAAAATCCAGAAGTAAACTACAGCCTTCTAAAGTTAAGAGCACTAGAATAATTTGCTTCATTTTCTAAAAAGACTAGAATAATTTGCATATTTTGGATAACAAGTCCCCAATACAATGAACCCAATCAATCTAGCAGGTGTAATTACCAAGGTTAAAACTAAGATAATTAAAGTCCCCAATACAATGGAAGCAATCAATCTAGCAGGTGGAACTAAATCCATATTAAAATAAACGAACCTAGACTAAAAAACTGAACTAACCAGAGGAAAAAAATCCATTGGAACCCCTGAACTACTCAAAAGGTCTAGTTCTCAAGACGATCCTTGAACTCTAACAACCCTGAACTATCAAAACAGTTCAATTTGCTGAGTCCCCGTTCTCGTTGCTGCCAAACGTAAGTGTATTCGCATACAAATCAGGCCATTGCCAACTCCTATCCCCCCAACTGGTGCAAAATTGGGTAACACCTCATTTTCGATGGCCAATCGCTCCTGCAAAATGGCATCTCTCCTAGCAAAAGTGATATGATGCACAATCGCACATACCTCGAGGGCGTGGGCGTGGCGCTTGTACTTGCGAAGCTCCTTGACGTACTTGGCGAGATCCGCCGCGCACGCCTCCCGCCCCTCGCGCACCCACTTGTTCATCACCCGCGACACGCTCCCTTCCCCCGCGCCCCCGAGCGCCGAGAGCCGCCGGTACAGCGACCGCGCGTCCTTCTCCTCCCCCGCCGCCGCCGCCGTCTTGGCGCCCTTCGCCGCGGCCTTCTCGGCGGCGGGAGCCACGGCCGCCGCCTCCGCCTCGGCGACTGCCGTGGAGAGGAGGCGGCGGAGGACGAGGCGAGCGGCGGCAGTGGGGACGGGCGGCGCCATGGGGGGTTTAGGGTTTTGGGAGGGTTTCGACTTTGGAGT

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CDS seq

ATGGCGCCGCCCGTCCCCACTGCCGCCGCTCGCCTCGTCCTCCGCCGCCTCCTCTCCACGGCAGTCGCCGAGGCGGAGGCGGCGGCCGTGGCTCCCGCCGCCGAGAAGGCCGCGGCGAAGGGCGCCAAGACGGCGGCGGCGGCGGGGGAGGAGAAGGACGCGCGGTCGCTGTACCGGCGGCTCTCGGCGCTCGGGGGCGCGGGGGAAGGGAGCGTGTCGCGGGTGATGAACAAGTGGGTGCGCGAGGGGCGGGAGGCGTGCGCGGCGGATCTCGCCAAGTACGTCAAGGAGCTTCGCAAGTACAAGCGCCACGCCCACGCCCTCGAGTTGATGGAATGGATGGTTAACACTAAGGGTATGAACATGTCATACACTAACCATGCCATACGTTTGGATCTCATTTATAAAGTGCGTGGCATTGAAGCAGCAGAACAATACTTTGCTGGCCTCCCTGATCCAGGCAAGAACCATAAAACTTATGGTGCACTTTTGAACTGTTATTGCTCTGCTAAAATGGAAGACAAAGCAACAGACATCTATCGCAAGATGGACGAACTAGGAATCTCATCCAGTACTCTTCCTATCAACAACCTGATGTCTCTTTACGTGAAGATAGGCCAGCATAGGAAGGTTACAAGCCTGTTTGAGGAGATGAAAGTGAAGAATGTTAAACCGGATAACCTCACATGCTGCCTGCTGATGAGTAGCTATGCAGCATTGAACAAGATAGATACTGTTGGAGAGGTTCTAAAAGAAATGGAAGAAAAAAAAGTGGCTCTAGGGTGGTCTGCATATAGCACACTCGCTTCCCTCTATGTGAATGCTAATATGGTTGAAGAAGCGGAATCTGCTTTGAAGAAACTCGAGAGTCTCATCGATGTTCAAGCTGGCAGGCAGCCTTTTGATTTCCTTATGAGCCTATATGCATCAGTAGGCAATCTGAGTGAGGTCAACAAAGTGTGGAACCTGATAAAGGCTAATTTTCAGAAGGTGACTAACACCAGCTACCTCGGCATGCTTCAAGCTCTTTATAAACTCAATGACGATGATCGCATGAAGCAGATTTATGAGGATTGGGAATCTAATTATGAAAATTATGATGCGAGGCTGACAAATATGATGACCCGAGCACATCTAAGAAATGGCTTGACCAAGGAAGCTGAATTACTATGGGAGAAGGTCAAGGAAAAAGGTGCAGAATTTGATTCCAAAACATGTGAGTTGTTTCTAGAGCATTACATGGGGAAAGGGGACATGACCTCTGCTTTGAACTGGGTTGAAAATATGACCAAACTTCCCAGGAAGAAATCGAAGCTAGATCAGGAGAAGATCAGCTGTTTCTTGAAGTATTTCGAAGAGCACAAGGATGTGGAAGGTGCCGAAAGGTTTCTCAACTGCTTGAGAACGTCAGGATGCATTGATGGCAAGGCATATGAGTCCCTCCTGCGGACCTACTTGGCGGCTGGCAAGACAAGCCGTTCGATCCGCCAAATGATCAAGGAAGATAAGATTGAGATATGCTATGGCATCGGGAAATTACTCAAGAGGATTGCCGACAAGGGACGCTGA

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Protein seq

MAPPVPTAAARLVLRRLLSTAVAEAEAAAVAPAAEKAAAKGAKTAAAAGEEKDARSLYRRLSALGGAGEGSVSRVMNKWVREGREACAADLAKYVKELRKYKRHAHALELMEWMVNTKGMNMSYTNHAIRLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASVGNLSEVNKVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGKAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLKRIADKGR

Function Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [UniProtKB/Swiss-Prot:Q93WC5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKYG_01g0013400 OsKYG_01g0013400.01 Chr01 11301611 11305503 - NAM
CDS seq

ATGGCGCCGCCCGTCCCCACTGCCGCCGCTCGCCTCGTCCTCCGCCGCCTCCTCTCCACGGCAGTCGCCGAGGCGGAGGCGGCGGCCGTGGCTCCCGCCGCCGAGAAGGCCGCGGCGAAGGGCGCCAAGACGGCGGCGGCGGCGGGGGAGGAGAAGGACGCGCGGTCGCTGTACCGGCGGCTCTCGGCGCTCGGGGGCGCGGGGGAAGGGAGCGTGTCGCGGGTGATGAACAAGTGGGTGCGCGAGGGGCGGGAGGCGTGCGCGGCGGATCTCGCCAAGTACGTCAAGGAGCTTCGCAAGTACAAGCGCCACGCCCACGCCCTCGAGTTGATGGAATGGATGGTTAACACTAAGGGTATGAACATGTCATACACTAACCATGCCATACGTTTGGATCTCATTTATAAAGTGCGTGGCATTGAAGCAGCAGAACAATACTTTGCTGGCCTCCCTGATCCAGGCAAGAACCATAAAACTTATGGTGCACTTTTGAACTGTTATTGCTCTGCTAAAATGGAAGACAAAGCAACAGACATCTATCGCAAGATGGACGAACTAGGAATCTCATCCAGTACTCTTCCTATCAACAACCTGATGTCTCTTTACGTGAAGATAGGCCAGCATAGGAAGGTTACAAGCCTGTTTGAGGAGATGAAAGTGAAGAATGTTAAACCGGATAACCTCACATGCTGCCTGCTGATGAGTAGCTATGCAGCATTGAACAAGATAGATACTGTTGGAGAGGTTCTAAAAGAAATGGAAGAAAAAAAAGTGGCTCTAGGGTGGTCTGCATATAGCACACTCGCTTCCCTCTATGTGAATGCTAATATGGTTGAAGAAGCGGAATCTGCTTTGAAGAAACTCGAGAGTCTCATCGATGTTCAAGCTGGCAGGCAGCCTTTTGATTTCCTTATGAGCCTATATGCATCAGTAGGCAATCTGAGTGAGGTCAACAAAGTGTGGAACCTGATAAAGGCTAATTTTCAGAAGGTGACTAACACCAGCTACCTCGGCATGCTTCAAGCTCTTTATAAACTCAATGACGATGATCGCATGAAGCAGATTTATGAGGATTGGGAATCTAATTATGAAAATTATGATGCGAGGCTGACAAATATGATGACCCGAGCACATCTAAGAAATGGCTTGACCAAGGAAGCTGAATTACTATGGGAGAAGGTCAAGGAAAAAGGTGCAGAATTTGATTCCAAAACATGTGAGTTGTTTCTAGAGCATTACATGGGGAAAGGGGACATGACCTCTGCTTTGAACTGGGTTGAAAATATGACCAAACTTCCCAGGAAGAAATCGAAGCTAGATCAGGAGAAGATCAGCTGTTTCTTGAAGTATTTCGAAGAGCACAAGGATGTGGAAGGTGCCGAAAGGTTTCTCAACTGCTTGAGAACGTCAGGATGCATTGATGGCAAGGCATATGAGTCCCTCCTGCGGACCTACTTGGCGGCTGGCAAGACAAGCCGTTCGATCCGCCAAATGATCAAGGAAGATAAGATTGAGATATGCTATGGCATCGGGAAATTACTCAAGAGGATTGCCGACAAGGGACGCTGA

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Protein seq

MAPPVPTAAARLVLRRLLSTAVAEAEAAAVAPAAEKAAAKGAKTAAAAGEEKDARSLYRRLSALGGAGEGSVSRVMNKWVREGREACAADLAKYVKELRKYKRHAHALELMEWMVNTKGMNMSYTNHAIRLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASVGNLSEVNKVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGKAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLKRIADKGR

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Gene Transcript Chromosome Start End Strand Source
OsKYG_01g0013400 OsKYG_01g0013400.02 Chr01 11301611 11303509 - NAM
CDS seq

ATGGAATGGATGGTTAACACTAAGGGTATGAACATGTCATACACTAACCATGCCATACGTTTGGATCTCATTTATAAAGTGCGTGGCATTGAAGCAGCAGAACAATACTTTGCTGGCCTCCCTGATCCAGGCAAGAACCATAAAACTTATGGTGCACTTTTGAACTGTTATTGCTCTGCTAAAATGGAAGACAAAGCAACAGACATCTATCGCAAGATGGACGAACTAGGAATCTCATCCAGTACTCTTCCTATCAACAACCTGATGTCTCTTTACGTGAAGATAGGCCAGCATAGGAAGGTTACAAGCCTGTTTGAGGAGATGAAAGTGAAGAATGTTAAACCGGATAACCTCACATGCTGCCTGCTGATGAGTAGCTATGCAGCATTGAACAAGATAGATACTGTTGGAGAGGTTCTAAAAGAAATGGAAGAAAAAAAAGTGGCTCTAGGGTGGTCTGCATATAGCACACTCGCTTCCCTCTATGTGAATGCTAATATGGTTGAAGAAGCGGAATCTGCTTTGAAGAAACTCGAGAGTCTCATCGATGTTCAAGCTGGCAGGCAGCCTTTTGATTTCCTTATGAGCCTATATGCATCAGTAGGCAATCTGAGTGAGGTCAACAAAGTGTGGAACCTGATAAAGGCTAATTTTCAGAAGGTGACTAACACCAGCTACCTCGGCATGCTTCAAGCTCTTTATAAACTCAATGACGATGATCGCATGAAGCAGATTTATGAGGATTGGGAATCTAATTATGAAAATTATGATGCGAGGCTGACAAATATGATGACCCGAGCACATCTAAGAAATGGCTTGACCAAGGAAGCTGAATTACTATGGGAGAAGGTCAAGGAAAAAGGTGCAGAATTTGATTCCAAAACATGTGAGTTGTTTCTAGAGCATTACATGGGGAAAGGGGACATGACCTCTGCTTTGAACTGGGTTGAAAATATGACCAAACTTCCCAGGAAGAAATCGAAGCTAGATCAGGAGAAGATCAGCTGTTTCTTGAAGTATTTCGAAGAGCACAAGGATGTGGAAGGTGCCGAAAGGTTTCTCAACTGCTTGAGAACGTCAGGATGCATTGATGGCAAGGCATATGAGTCCCTCCTGCGGACCTACTTGGCGGCTGGCAAGACAAGCCGTTCGATCCGCCAAATGATCAAGGAAGATAAGATTGAGATATGCTATGGCATCGGGAAATTACTCAAGAGGATTGCCGACAAGGGACGCTGA

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Protein seq

MEWMVNTKGMNMSYTNHAIRLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASVGNLSEVNKVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGKAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLKRIADKGR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.258784 5.707111 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0301000 RBH 1.436062 0.883966 3.013771
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g19490 RBH 0.853842 0.494534 0.645307
Nipponbare | IRGSP 1.0 | RAP-db Os01g0301000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0013790 RBH 0.789791 2.184044 1.187654
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0013560 RBH 0.0 0.842029 0.863830
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0013810 RBH 2.241087 2.348037 2.054566
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0013290 RBH 0.127184 0.210136 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0013410 RBH 1.652898 12.144207 6.544519
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0184600 RBH 4.5742 9.5193465 20.410992
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0013330 RBH 0.141541 0.433810 0.388759
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0182900 RBH 3.346031 9.885585 22.061776
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0013320 RBH 0.0 0.127904 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0002270 SBH 0.197707 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0013380 RBH 2.413392 11.582044 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0013490 RBH 0.228838 0.200532 0.967846
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0013170 RBH 0.319465 3.213094 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G013490 RBH 0.313835 2.788229 0.788800
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0013260 RBH 1.000520 12.476431 3.379411
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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