Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0013380 | OGI:01033580 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:11290695-11294615 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaccaaataaattacctcaaatttgatttaacatattcgatccctttgcacgggatgacaagacagaagcctatgcaaggtgttctcttgaaaggccttgtctctcgttctgcacgcaattacttcctgtccgaatggcttctcctgttcacaaagacttatccacaacacacttgggactagcatgcacatatcattgtcagggcatcaaactgatagcacactgactacaagagatggaaacagcaacgattctgtagtaggattcttgcttcagtactgtatgtctggagaagccatttcgttcagaaagtaagcaaaaaagaagtgttggagaaaagcctcctcagacaagactacacgttgcacttgaagaaaaaaccctttaccctagcatgcctctgcttcttgaaaaaaaaagcaagaaaaggctggaacagcatcctagccatgaggtatatcatcctctacatggagcagtaggaagaagggagaacagttcactcaaacgaatctgctttgtgccgctcgccgaagaatcacgtgtcaccgacaaagtaaaattaccgaggataaacatttcagcgtcccttgtcggcaatcctcttgagtaatttcccgatgccatagcatatctcaatcttatcttccttgatcatttggcggatcgaacggcttgtcttgccagccgccaagtaggtccgcaggagggactcatatgccttgccatcaatgcatcctgacgttctcaagcagttgagaaacctttcggcaccttccacatccttgtgctcttcgaaatacttcaagaaacagctgatcttctcctgatctagcttcgatttcttcctgggaagtttggtcatattttcaacccagttcaaagcagaggtcatgtcccctttccccatgtaatgctctagaaacaactcacatgttttggaatcaaattctgcacctttttccttgaccttctcccatagtaattcagcttccttggtcaagccatttcttagatgtgctcgggtcatcatatttgtcagcctcgcatcataattttcataattagattcccaatcctcataaatctgcttcatgcgatcatcgtcattgagtttataaagagcttgaagcatgccgaggtagctggtgttagtcaccttctgaaaattagcctttatcaggttccacactttgttgacctcactcagattgcctactgatgcatataggctcataaggaaatcaaaaggctgcctgccagcttgaacatcgatgagactctcgagtttcttcaaagcagattccgcttcttcaaccatattagcattcacatagagggaagcgagtgtgctatatgcagaccaccctagagccacttttttttcttccatttcttttagaacctctccaacagtatctatcttgttcaatgctgcatagctactcatcagcaGgcagcatgtgaggttatccggtttaacattcttcactttcatctcctcaaacaggcttgtaaccttcctatgctggcctatcttcacgtaaagagacatcaggttgttgataggaagagtactggatgagattcctagttcgtccatcttgcgatagatgtctgttgctttgtcttccattttagcagagcaataacagttcaaaagtgcaccataagttttatggttcttgcctggatcagggaggccagcaaagtattgttctgctgcttcaatgccacgcactttataaatgagatccaaacgtatggcatggttagtgtatgacatgttcatacccttagtgttaaccatccattccatcaactgccaaagaaatcaagaaaaaaaaatgttgcataagcataataaacaaaaaccaataacagaagtacatacagactggtatgaaacaagatatgttgagaagttcagtactactaatcttttcagaccttgaggataactgagaatatagttgtaacaacatgctattatttttattgcaatataggcagaaaatatgtccattcatctgcttaacatgctgaacaacatctaccatgtcaaaagcaggcaggttttcttgcaaaagagtatgctacatcatctaaatggagtcagtcagtgaattggcagggagaaaacaccgagcccaccatcctgaccttaaatggcttaaaaatccctagaccccaaaatatctggatagtgcattccaccccctctaacctccaatgctggtcttccctgcgtcgctactaaacacaagatgcaaccgctttctctctaccgcaggcacctctctgcaccaaatattcctctcgtgttgccaacctccctgcaccattccctccctcgagttccttttatcccctcacatctatgcaccattccatccccttccttccccgcatcattgccatatcggcaccacctccaccttctcaccactcttcgctgcttctctcctcagagcttcatccatcctcagccattcgaaagacaacaagtgaaggtttgttttacaactggcattgaaatccctctgtaggatctacagagcttatcagtttcatctccatggtcatgctattcgattaattgtcatctggaactgttatggtaataattttgaaacaagttttacaatattttgttctatgcttggacctctggaaaattccattctacagaaccaaaagtcacatggatgtaggcttatgaaacatatatgaataaaatttatgtccattcagggtcaatgacatatttacgctagaaacacagacattgtaaaacaaaaccagcatcctgaggtaaccacgccatcgcacagacaacttgtgagacaaaattacatctcaggggcgtaggtaaccatatttggcagctgcaacttgaaacttgaaacaaagaaagcaaaagaagataaggcaaaatttcctcaaaaaataaggatataaagtgaattgggcctagcacacaaaatccagaagtaaactacagccttctaaagttaagagcactagaataatttgcttcattttctaaaaagactagaataatttgcatattttggataacaagtccccaatacaatgaacccaatcaatctagcaggtgtaattaccaaggttaaaactaagataattaaagtccccaatacaatggaagcaatcaatctagcaggtggaactaaatccatattaaaataaacgaacctagactaaaaaactgaactaaccagaggaaaaaaatccattggaacccctgaactactcaaaaggtctagttctcaagacgatccttgaactctaacaaccctgaactatcaaaacagttcaatttgctgagtccccgttctcgttgctgccaaacgtaagtgtattcgcatacaaatcaggccattgccaactcctatccccccaactGatatcaaaattgggtaacacctcattttcgatcgccaatcgctcctgcaaaatggcatctctcctagcaaaagtgatatgatgcacaatcgcacatacctcgagggcgtgggcgtggcgcttgtacttgcgaagctccttgacgtacttggcgagatccgccgcgcgcgcctcccgcccctcgcgcacccacttgttcatcacccgcgacacgctcccttcccccgcgcccccgagcgccgagagccgccggtacagcgaccgcgcgtccttctcctcccccgccgccgccgccgtcttggcgcccttcgccgcggccttctcggcggcgggagccacggccgccgcctccgcctcggcgaccgccgtggagaggaggcggcggaggacgaggcgagcggcggcagtggggacgggcggcgccatggggggtttagggttttgggagggtttcgactttggagtgcgggagagaagaagaagatggggga
More
|
||||||||||
| CDS seq | atggcgccgcccgtccccactgccgccgctcgcctcgtcctccgccgcctcctctccacggcggtcgccgaggcggaggcggcggccgtggctcccgccgccgagaaggccgcggcgaagggcgccaagacggcggcggcggcgggggaggagaaggacgcgcggtcgctgtaccggcggctctcggcgctcgggggcgcgggggaagggagcgtgtcgcgggtgatgaacaagtgggtgcgcgaggggcgggaggcgcgcgcggcggatctcgccaagtacgtcaaggagcttcgcaagtacaagcgccacgcccacgccctcgagttgatggaatggatggttaacactaagggtatgaacatgtcatacactaaccatgccatacgtttggatctcatttataaagtgcgtggcattgaagcagcagaacaatactttgctggcctccctgatccaggcaagaaccataaaacttatggtgcacttttgaactgttattgctctgctaaaatggaagacaaagcaacagacatctatcgcaagatggacgaactaggaatctcatccagtactcttcctatcaacaacctgatgtctctttacgtgaagataggccagcataggaaggttacaagcctgtttgaggagatgaaagtgaagaatgttaaaccggataacctcacatgctgcCtgctgatgagtagctatgcagcattgaacaagatagatactgttggagaggttctaaaagaaatggaagaaaaaaaagtggctctagggtggtctgcatatagcacactcgcttccctctatgtgaatgctaatatggttgaagaagcggaatctgctttgaagaaactcgagagtctcatcgatgttcaagctggcaggcagccttttgatttccttatgagcctatatgcatcagtaggcaatctgagtgaggtcaacaaagtgtggaacctgataaaggctaattttcagaaggtgactaacaccagctacctcggcatgcttcaagctctttataaactcaatgacgatgatcgcatgaagcagatttatgaggattgggaatctaattatgaaaattatgatgcgaggctgacaaatatgatgacccgagcacatctaagaaatggcttgaccaaggaagctgaattactatgggagaaggtcaaggaaaaaggtgcagaatttgattccaaaacatgtgagttgtttctagagcattacatggggaaaggggacatgacctctgctttgaactgggttgaaaatatgaccaaacttcccaggaagaaatcgaagctagatcaggagaagatcagctgtttcttgaagtatttcgaagagcacaaggatgtggaaggtgccgaaaggtttctcaactgcttgagaacgtcaggatgcattgatggcaaggcatatgagtccctcctgcggacctacttggcggctggcaagacaagccgttcgatccgccaaatgatcaaggaagataagattgagatatgctatggcatcgggaaattactcaagaggattgccgacaagggacgctga
More
|
||||||||||
| Protein seq | MAPPVPTAAARLVLRRLLSTAVAEAEAAAVAPAAEKAAAKGAKTAAAAGEEKDARSLYRRLSALGGAGEGSVSRVMNKWVREGREARAADLAKYVKELRKYKRHAHALELMEWMVNTKGMNMSYTNHAIRLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASVGNLSEVNKVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGKAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLKRIADKGR |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [UniProtKB/Swiss-Prot:Q93WC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0013380 | OsGoSa_01g0013380.01 | Chr01 | 11290695 | 11294615 | - | NAM | ||
| CDS seq | atggcgccgcccgtccccactgccgccgctcgcctcgtcctccgccgcctcctctccacggcggtcgccgaggcggaggcggcggccgtggctcccgccgccgagaaggccgcggcgaagggcgccaagacggcggcggcggcgggggaggagaaggacgcgcggtcgctgtaccggcggctctcggcgctcgggggcgcgggggaagggagcgtgtcgcgggtgatgaacaagtgggtgcgcgaggggcgggaggcgcgcgcggcggatctcgccaagtacgtcaaggagcttcgcaagtacaagcgccacgcccacgccctcgagttgatggaatggatggttaacactaagggtatgaacatgtcatacactaaccatgccatacgtttggatctcatttataaagtgcgtggcattgaagcagcagaacaatactttgctggcctccctgatccaggcaagaaccataaaacttatggtgcacttttgaactgttattgctctgctaaaatggaagacaaagcaacagacatctatcgcaagatggacgaactaggaatctcatccagtactcttcctatcaacaacctgatgtctctttacgtgaagataggccagcataggaaggttacaagcctgtttgaggagatgaaagtgaagaatgttaaaccggataacctcacatgctgcCtgctgatgagtagctatgcagcattgaacaagatagatactgttggagaggttctaaaagaaatggaagaaaaaaaagtggctctagggtggtctgcatatagcacactcgcttccctctatgtgaatgctaatatggttgaagaagcggaatctgctttgaagaaactcgagagtctcatcgatgttcaagctggcaggcagccttttgatttccttatgagcctatatgcatcagtaggcaatctgagtgaggtcaacaaagtgtggaacctgataaaggctaattttcagaaggtgactaacaccagctacctcggcatgcttcaagctctttataaactcaatgacgatgatcgcatgaagcagatttatgaggattgggaatctaattatgaaaattatgatgcgaggctgacaaatatgatgacccgagcacatctaagaaatggcttgaccaaggaagctgaattactatgggagaaggtcaaggaaaaaggtgcagaatttgattccaaaacatgtgagttgtttctagagcattacatggggaaaggggacatgacctctgctttgaactgggttgaaaatatgaccaaacttcccaggaagaaatcgaagctagatcaggagaagatcagctgtttcttgaagtatttcgaagagcacaaggatgtggaaggtgccgaaaggtttctcaactgcttgagaacgtcaggatgcattgatggcaaggcatatgagtccctcctgcggacctacttggcggctggcaagacaagccgttcgatccgccaaatgatcaaggaagataagattgagatatgctatggcatcgggaaattactcaagaggattgccgacaagggacgctga
More
|
|||||||
| Protein seq | MAPPVPTAAARLVLRRLLSTAVAEAEAAAVAPAAEKAAAKGAKTAAAAGEEKDARSLYRRLSALGGAGEGSVSRVMNKWVREGREARAADLAKYVKELRKYKRHAHALELMEWMVNTKGMNMSYTNHAIRLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASVGNLSEVNKVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGKAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLKRIADKGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.413392 | 11.582044 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0301000 | RBH | 1.436062 | 0.883966 | 3.013771 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19490 | RBH | 0.853842 | 0.494534 | 0.645307 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0301000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013790 | RBH | 0.789791 | 2.184044 | 1.187654 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013560 | RBH | 0.0 | 0.842029 | 0.863830 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013810 | RBH | 2.241087 | 2.348037 | 2.054566 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013290 | RBH | 0.127184 | 0.210136 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013410 | RBH | 1.652898 | 12.144207 | 6.544519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0184600 | RBH | 4.5742 | 9.5193465 | 20.410992 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013330 | RBH | 0.141541 | 0.433810 | 0.388759 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0182900 | RBH | 3.346031 | 9.885585 | 22.061776 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013320 | RBH | 0.0 | 0.127904 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013400 | RBH | 0.258784 | 5.707111 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002370 | SBH | 1.278826 | 3.439132 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013490 | RBH | 0.228838 | 0.200532 | 0.967846 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013170 | RBH | 0.319465 | 3.213094 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013490 | RBH | 0.313835 | 2.788229 | 0.788800 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013260 | RBH | 1.000520 | 12.476431 | 3.379411 |
