Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0003160 | OGI:11007120 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:2097981-2099108 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTGAGCATTGAATTTTTGCTACTGACAGGAAAGAACTCAGGTTAAATGTTTGATTTCACATAACCAAAAAAAAAAGCAATGGAGAGGCAGATGATCTGGTAAGAACAACTGATGGGTGCAGCACTGCACAAGATAGTAATCTTTTTATGACTTCATCCATTCAGGTATATACGCATATATCCGTTCAGGTATATATGCGTAAGAACAACTGATGAGGCAGATTTCTCTACTATTATTGATAGCGTACACTATGCACACATTAATTTAATGGTGGAATAGTCATTGTCGTTAAAACAATTAACAACGGCGCAATATCACCATCGTTAAATAAATAACAAGGACACTATCGTGGATTCTATATTTTGAAGAAAGTTTCACTCAAAAGTGAATCAGATATGAATCAGTACTGCAAGAAATAAGTATGTCTTGTCATATCAATTTTTTTACCACGCAAAGAAATATTTTATTTACCGCTCTAATGGATCGTTGGATGTATTTTGACTGCCTTGGCCATCTGGTGGTGTTGGTACGGCACCCATCCAAGCTCCATATGGGGAAACAAATGAATTACTCTGCAGTGGAGGTGCTGTCCACCAACCTACGTCAGAAGCACACCATCCATTAGTTTTCTGTTGATGACCTATTCACTAGAGGCTGGACCAACGGAGACGACGGCGGAAAGTGCGATTTTACTTGGAACAGCCATGGCTTCACCAGACAGAGGGAAGGCGACGCCGGGCTTCACTACACCACCCCACCAAGGAACGCCGGGAGGCAAAGCTTGAGGCGTTGGAGGAGCAATCTCCCGCTTGGATCTATGGCTCATCACTTGAGGTTTGAGGAGATATGAGGATTAGGGATGAGTTTCAGGAAGACTGAGCGACAAGCGGTGGATTTATGGATTAGGGGCAAACTTGGCTTGGGTCTACCGCGGGAATAAGAGGGTGATTTGGCGCATAAACTACGCGGGAAGATTAGCAGCCATGGGGATTTGGCGCCCTGGAGAAGAGGAGAGCGCGCGAGGAGGAAGACGCAGGGGCGTGCAGGGAACACCCGATCCCCTTTGGCGAGAAAATGCATTGAATAGCGGCAGCTTGTGTCGATACGGTGTCGTTGCGAGTCTCGAT
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| CDS seq | ATGAGCCATAGATCCAAGCGGGAGATTGCTCCTCCAACGCCTCAAGCTTTGCCTCCCGGCGTTCCTTGGTGGGGTGGTGTAGTGAAGCCCGGCGTCGCCTTCCCTCTGTCTGGTGAAGCCATGGCTGTTCCAAGTTGGTGGACAGCACCTCCACTGCAGAGTAATTCATTTGTTTCCCCATATGGAGCTTGGATGGGTGCCGTACCAACACCACCAGATGGCCAAGGCAGTCAAAATACATCCAACGATCCATTAGAGCGGTAA |
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| Protein seq | MSHRSKREIAPPTPQALPPGVPWWGGVVKPGVAFPLSGEAMAVPSWWTAPPLQSNSFVSPYGAWMGAVPTPPDGQGSQNTSNDPLER |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0003160 | OsIR64_11g0003160.01 | Chr11 | 2097981 | 2099108 | - | NAM | ||
| CDS seq | ATGAGCCATAGATCCAAGCGGGAGATTGCTCCTCCAACGCCTCAAGCTTTGCCTCCCGGCGTTCCTTGGTGGGGTGGTGTAGTGAAGCCCGGCGTCGCCTTCCCTCTGTCTGGTGAAGCCATGGCTGTTCCAAGTTGGTGGACAGCACCTCCACTGCAGAGTAATTCATTTGTTTCCCCATATGGAGCTTGGATGGGTGCCGTACCAACACCACCAGATGGCCAAGGCAGTCAAAATACATCCAACGATCCATTAGAGCGGTAA
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| Protein seq | MSHRSKREIAPPTPQALPPGVPWWGGVVKPGVAFPLSGEAMAVPSWWTAPPLQSNSFVSPYGAWMGAVPTPPDGQGSQNTSNDPLER |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0146950 | RBH | 3.086252 | 2.911127 | 4.315090 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0146950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003160 | RBH | 0.555163 | 0.000000 | 5.482026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003220 | RBH | 0.318147 | 0.000000 | 0.355747 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003160 | RBH | 1.298186 | 5.049746 | 7.830981 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003090 | RBH | 0.186650 | 0.096413 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003090 | RBH | 3.340966 | 11.312457 | 8.070008 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0040400 | RBH | 1.9824265 | 4.885026 | 4.777076 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016880 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0038600 | RBH | 4.1505725 | 5.885265 | 6.6665065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003040 | RBH | 0.153624 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003170 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003150 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003080 | RBH | 0.000000 | 0.0 | 0.751871 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003170 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003150 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003160 | RBH | 0.000000 | 0.000000 | 0.000000 |
