Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_10g0008371 | OGI:10039040 | 14/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr10:13342868-13345509 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCCAATCCCCCAAAATTTCTCGCACCCACGGCGATTTCCATTCCAAACCACCACGGCCAATCAACAGAACCTGCGGCCAGCCGGCCAAGAACCCAGGATCATCCAAGAATCGCTTTGCTAGGCACGCAATGCGCGAGCAAGGGGTGGAGGAGAGAGAGGAGGGGAGGCTCACATTCGTGGTTGAAGAGGTAGGCGCAGCCGAAGCAGCCATGGATGTCCCTGGAGAGGATGGCGTCCACGCGGCACAGATCAGAAATCCTTTACACTGATCGGAAATTCCGAAAGTTCATATCAGAAATTTCCGAAAGTGCAATGTCTCTCTCTCTGCCCTTTTCCTGAACTGAACATACATACCCTTTCACTTCTATTCTTGCACTCTTTCAGTTTTCACCGCCACCTCTCACTCTCCTCTAACTCCTCTCAGGCAGGCAACCTCGGTGGTGCATCCTCATTGGGAAACTCTCAGCTGAGCCGGCAAGCCTTTGCCGGAGTTCGTTGGCATCCTCGGCATCCACTTCCCAGCATCTTCACCAAGGCGTGTTTCTCTCTTTTTTGAGGTATTCTTGCCCCTTCTTTGCCCTGGTTCTTGTCCAAATCTTGATCTATGATTCTAGGGATTATCTTTCAAATCCTTTTGGTGAAGATGTTGCTATAGTCGTATAGAAACCTTGCCTAGAGTATCATTTGATTTCGTTGGCTATAAATCTAGATGTCGAGATTGTTTGGGCTATGTCTGAAAATAATGTATATTCCGATCGGGTCGATCTGAAATTCCGATGCTTTTTGGAAAATCCGAAGCGATCAGAAATTCTGATCACTTATTGGAATGTCCAATGTTTATAGACCAGTTCAAGCAGCCTTTATTTTTTTATTTCAATTCTCTTGTCAATCATCTACTCAGTCATCACTCTCACTCAGTGTTCTTTCATGCTCAAGGGGGCCTTCAAGGATCAAAATTTCTGCTATTCCACTCGTTCCAAGGAGAGCTTCATGGCCCACACCAAGCACAAGACTTAGAATGGCAAGCGGCGACGGGTTCGATCTTCCTCCTCGGAGTCAAATGGTGATGATTTTGATTGTAAAGGGAAGGAGGAAACTCAAGTCGCAAATGTGGAAAGGGGTGGTGATTTACTGCAAAGGAGGGCACCTAGGAAGCCGAAAGCTACCACCGTTGAAACAAGTCTTGCAGGTGCTAGTTCTAGTACCCAACCTGAGGTACAAGAGGAGATACCGACAATGGGTGGGGAATGTAGGGAGAAGGGTGCTCTCATCAGTCCTTTGTTCGTGCACCTCCCCGCTCGAAGTGCTAAACATGTTCGCAACCCCATAGATTGGAGTGCCAAGACTAAGAAGGTGCAGATGATAAGAGTGGAGATCCCAAAGAATGGATGCCGCTCAGCCACCGATCCTCGTTTTTGGACTCTTTTCCAACAAGATTTCTATGAGGCGGTTATCATGAATAAGTCCAACATGCAGTGGATTAATTGGAGAGCTGCTGCCTCTTATGGCGACCCCGTGATGAATGAGGTGATTGAGGCTTGTGAGGCCATGGGGATCAAGGATTTCATGAGCATGAGATATGATTGGAGTGAGGAAATCATCTGTCAATTCTATGCCACAGTTTGGTACCAAAGGAAATAAGAAAAAGACCATGCACTGGATGACACAGGGGGAATGGCATTGCATCAACTACAGTCAATTCGCTGCTCTTTTGGATCTCACCTTTGATGATGATGAAGACAGGGATTGGTTGCATGATGACAAGGTCTTGGAGCCTCATGAGGTTGACTTCATGTACAATCATAAGGTGGAGTACGACCCTGGGACAACAAAGGGTATGCTTCCTTTCTTTGCCTATCTCAACAAGATGATTCGCAAAACACTCACTCCCAAGGATGACGATGACAACAATGTCCAATCTTACACTCACAACATTCTTGCAAGGATGAGGGCTTCTCCGAAGAAATTTGATGTGTTTGAGTTCATTTGGGAGGAGATTCGCCTCACATCTTTCACTCCTGAGTGTAGTCTTGGCTATGCTCCCATATTGATGAAAATGATTGAGCAAGTCACCAAACTTCGATTCTACAAGGAGGTGCACCACACTGGACTCAAAGTGAGGCTAGAGAAACCCATGACCACTCCTAGGAGGCCAAGGTCTACCACTAAAGCTGCACGTACTCAAGCTCCCTCCACTCCGACTCTCTCTTCTTCACTGTTGTGGAAAATTCTCAAGTCTATCTATAATGTGTGCAAGTCCAACGCCATCGAAGCCAGGAAGGGGCGAGCGGAATTGAAGAAGCAGATTACAACTTTCCTTGCTCCCCCGATGGCTCCGAGGTCAATGAAAGTGATAAAGTGTTCGATGATCCCTTTGCCGACGAAGCTAGTAGTGGTGTTGTTCAGGAGAAGGAAGGTGTGGGACATGGTGATAGTGGTGATGATGGGCATGATGATTGACTCCATATGGCATTAGGTTCTCTCTCCAATTTTAATTTATCTCTTTTTGGTCCTCGATGCCAAAGGGGGGAGAGCCACATCTCTTTTCCATCTATCATTGTTGTTGGTCGGACAAATTTGGGCTTGCTTGTATGAGACAATGTGTGTTTTTATTTCCTTAAGATTTGTTCAACTTAATGC
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| CDS seq | ATGGCAAGCGGCGACGGGTTCGATCTTCCTCCTCGGAGTCAAATGGTGATGATTTTGATTGTAAAGGGAAGGAGGAAACTCAAGTCGCAAATGTGGAAAGGGGTGGTGATTTACTGCAAAGGAGGGCACCTAGGAAGCCGAAAGCTACCACCGTTGAAACAAGTCTTGCAGGTGCTAGTTCTAGTACCCAACCTGAGGTACAAGAGGAGATACCGACAATGGGTGGGGAATGTAGGGAGAAGGGTGCTCTCATCAGTCCTTTGTTCGTGCACCTCCCCGCTCGAAGTGCTAAACATGTTCGCAACC |
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| Protein seq | MASGDGFDLPPRSQMVMILIVKGRRKLKSQMWKGVVIYCKGGHLGSRKLPPLKQVLQVLVLVPNLRYKRRYRQWVGNVGRRVLSSVLCSCTSPLEVLNMFAT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_10g0008371 | OsIR64_10g0008371.01 | Chr10 | 13342868 | 13345509 | + | IsoSeq | ||
| CDS seq | ATGGCAAGCGGCGACGGGTTCGATCTTCCTCCTCGGAGTCAAATGGTGATGATTTTGATTGTAAAGGGAAGGAGGAAACTCAAGTCGCAAATGTGGAAAGGGGTGGTGATTTACTGCAAAGGAGGGCACCTAGGAAGCCGAAAGCTACCACCGTTGAAACAAGTCTTGCAGGTGCTAGTTCTAGTACCCAACCTGAGGTACAAGAGGAGATACCGACAATGGGTGGGGAATGTAGGGAGAAGGGTGCTCTCATCAGTCCTTTGTTCGTGCACCTCCCCGCTCGAAGTGCTAAACATGTTCGCAACC
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| Protein seq | MASGDGFDLPPRSQMVMILIVKGRRKLKSQMWKGVVIYCKGGHLGSRKLPPLKQVLQVLVLVPNLRYKRRYRQWVGNVGRRVLSSVLCSCTSPLEVLNMFAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.302240 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008390 | RBH | 0.000000 | 3.596972 | 1.654111 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008580 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
