Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_10g0008580 | OGI:10039040 | 14/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr10:13402364-13407304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagattggcacaaccaaaccttctttccccgaattccagacaatccaatcccccaaaatttctcgcacccacggcgatttccattccaaaccaccacggccaatcaacagaacctgcggccagccggccaagaacccaggatcatccaagaatcgctttgctaggcacgcaatgcgcgagcaaggggtggaggagagagaggaggggaGgctcacattcgtggttgaagaggtaggcgcagccgaagcagccatggatgtccctggagaggatggcgtccacgcggcacagatcagaaatcctttacactgatcggaaattccgaaagttcatatcagaaatttccgaaagtgcaatgtctctctctctgcccttttcctgaactgaacatacataccctttcacttctattcttgcactctttcagttttcaccgccacctctcactctcctctaactcctctcaggcaggcaacctcggtggtgcatcctcattgggaaactctcagctgagccggcaagcctttgccggagttcgttggcatcctcggcatccacttcccagcatcttcaccaaggcgtgtttctctcttttttgaggtattcttgccccttctttgccctggttcttgtccaaatcttgatctatgattctagggattatctttcaaatccttttggtgaagatgttgctatagtcgtatagaaaccttgcctagagtatcatttgatttcgttggctataaatctagatgtcgagattgtttgggctatgtctgaaaataatgtatattccgatcgggtcgatctgaaattccgatgctttttggaaaatccgaagcgatcagaaattctgatcacttattggaatgtccaatgtttatagaccagttcaagcagcctttatttttttatttcaattctcttgtcaatcatctactcagtcatcactctcactcagtgttctttcatgctcaagggggccttcaaggatcaaaatttctgctattccactcgttccaaggagagcttcatggcccacaccaagcacaagacttagaatggcaagcggcgacgggttcgatcttcctcctcggagtcaaatggtgatgattttgattgtaaagggaaggaggaaactcaagtcgcaaatgtggaaaggggtggtgatttactgcaaaggagggcacctaggaagccgaaagctaccaccgttgaaacaagtcttgcaggtgctagttctagtacccaacctgaggtacaagaggagataccgacaatgggtggggaatgtagggagaagggtgctctcatcagtcctttgttcgtgcacctccccgctcgaagtgctaaacatgttcgcaaccccatagattggagtgccaagactaagaaggtgcagatgataagagtggagatcccaaagaatggatgccgctcagccaccgatcctcgtttttggactcttttccaacaagatttctatgaggcggttatcatgaataagtccaacatgcagtggattaattggagagctgctgcctcttatggcgaccccgtgatgaatgaggtgattgaggcttgtgaggccatggggatcaaggatttcatgagcatgagatatgattggagtgaggaaatcatctgtcaattctatgccacagtttggtaccaaaggaaataagaaaaagaccatgcactggatgacacagggggaatggcattgcatcaactacagtcaattcgctgctcttttggatctcacctttgatgatgatgaagacagggattggttgcatgatgacaaggtcttggagcctcatgaggttgacttcatgtacaatcataaggtggagtacgaccctgggacaacaaagggtatgcttcctttctttgcctatctcaacaagatgattcgcaaaacactcactcccaaggatgacgatgacaacaatgtccaatcttacactcacaacattcttgcaaggatgagggcttctccgaagaaatttgatgtgtttgagttcatttgggaggagattcgcctcacatctttcactcctgagtgtagtcttggctatgctcccatattgatgaaaatgattgagcaagtcaccaaacttcgattctacaaggaggtgcaccacactggactcaaagtgaggctagagaaacccatgaccactcctaggaggccaaggtctaccactaaagctgcacgtactcaagctccctccactccgactctctcttcttcactgttgtggaaaaTtctcaagtctatctataatgtgtgcaagtccaacgccatcgaagccaggaaggggcgagcggaattgaagaagcagattacaactttccttgctcccccgatggctccgaggtcaatgaaagtgataaagtgttcgatgatccctttgccgacgaagctagtagtggtgttgttcaggagaaggaaggtgtgggacatggtgatagtggtgatgatgggcatgatgattgactccatatggcattaggttctctctccaattttaatttatctctttttggtcctcgatgccaaaggggggagagccacatctcttttccatctatcattgttgttggtcggacaaatttgggcttgcttgtatgagacaatgtgtgtttttatttccttaagatttgttcaacttaatgcatatgtggtgtatgaaactatgtgatgtaatgttatttatcgtttctagcccatatgtgtgaatgctgctatgtcatgtatatatactttcaagcaatcttatgtgaagatttaggggagctctctacatgcctattatgcacaattctaggggagctaaacttctatcattggacccaaaaccctttttacatatatctttttattacattctaatcgaattgtgatcgacAaaaaaaaagggagattgaaagtgcgtctagacccctaattattttggtagttaatggcaatcgaatagggaggactaacaagtttgttgagaatgtgcacagtgaatttagccctttgatggtatggaaagattggtttcagcaaatccaattggaaatgaaaagtgtatgggaaaaactcctatggtaaattttttctcttatttgtgtcataggaaaagctctactataaagagtgatatcacttcgaaatctagcgttgaaaaTttggtgctcaaatatgttgcagagttcctttcaaaactttcaagttgctggaattttcaatagatcagaatttccaatgttatgtcggaatatctaaaatgacgttctgtagctctgttgaagaaaatatcggaatttgtgatatggtcacacaagtggtttagttggacaaaaagaaaaaatcggaattcctgatatacacttcggaatttccaatatggccacacggggctctgttgaggaatttatcggattctccaatgtgcttggagtatgttgtttgggagttatttagcaatggatatagtcaacaattagatctatagctctcaagtatgtgttttgtgcatatttgcatgtaggtatgtcgtatacagctcggccaatcttcaggttgcaatccaaactccgacagaagaatggtaaagccaggtgagcaagaaagtgaaattaattactccctccggttctataataattggcgttttgaacaaggttgaggtcaaactttaataactttgaccatcaataacttcaaaaatacttagtttaaaaaaactagataaacatatatagatttgtctttcaaaacactattataaaagtaaacatgcatttatttattgtgtatattataatagaaaaataagatcaaaggtacattttgtaaactgtgccattgtccaaaacgtcaattaaaatgaaaccggagggagcactactaatccacaacaaagtgtgaaatgaactgcgccatgagtggccaaaagcactaatcaaatgttaatctctggcacttcatcatttttcggttaaaaccgttaccaccAAagtgccagaatttgcatcaaaaagacagtgatgctctacttctgttgtcaatcttcgtcccccccaaatcagacgcagctgttttcatctcttcttttgaGggggtctagtactgcatgagcaactacagcatgcatacaaactttgatcgccgccaaagttgttgttacaatctttgaattgttttggatctacacaaaatacatacatacaggttgatgagttccatggcgccagtctttttcaccgggcttctttccacatcctggccttctccaggatgaacttgccttccttgtacttctcgctctcttcgtatgctttctcctgtagagcattataggtgcaaattaacaatccaaaaagagAaaataaaacaatgaggtgacaaatgaagcagtgttaagagctgaagactgtcacatcgagataatatggtaaatgagctgtattgatgccagaacaaagttattgcattgctaatacgtacgatgaatgggtgagtacatgtcacaaacacataaattctcccagttatgaaaaattgaaagagaagctatgAaaaaaaaaacagaagttagcagttacccacacgcaactgaaagagaaccttagatgcgcaacttagcatataggtgaagataagccacattcagggtttattaaacaaagtgaatttcagtagaggtcggttcaagcaactttaattaagggaaagatgccactgtaactgcaataaaaaaaatacagttgatgtactcccttaaatgccaggatggaaccaatgggtacaagaacaatgcaaaatttctaaacgacttgcaggatctgtgccttgaatcttcatgggacatagggcttagaatagtagcatacaaaattgactggaagtcacaaaacacagaacttcagatgagaaaatag
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| CDS seq | atgcagattggcacaaccaaaccttctttccccgaattccagacaatccaatcccccaaaatttctcgcacccacggcgatttccattccaaaccaccacggccaatcaacagaacctgcggccagccggccaagaacccaggatcatccaagaatcgctttgctaggcacgcaatgcgcgagcaaggggtggaggagagagaggaggggaGgctcacattcgtggttgaagagtcatcactctcactcagtgttctttcatgctcaagggggccttcaaggatcaaaatttctgctattccactcgttccaaggagagcttcatggcccacaccaagcacaagacttagaatggcaagcggcgacgggttcgatcttcctcctcggagtcaaatggtgatgattttgattgtaaagggaaggaggaaactcaagtcgcaaatgtggaaaggggtggtgatttactgcaaaggagggcacctaggaagccgaaagctaccaccgttgaaacaagtcttgcaggtcttggagcctcatgaggttgacttcatgtacaatcataaggtggagtacgaccctgggacaacaaagggtatgcttcctttctttgcctatctcaacaagatgattcgcaaaacactcactcccaaggatgacgatgacaacaatgtccaatcttacactcacaacattcttgcaaggatgagggcttctccgaagaaatttgatgtgtttgagttcatttgggaggagattcgcctcacatctttcactcctgagtgtagtcttggctatgctcccatattgatgaaaatgattgagcaagtcaccaaacttcgattctacaaggaggtgcaccacactggactcaaagtgaggctagagaaacccatgaccactcctaggaggccaaggtctaccactaaagctgcacgtactcaagctccctccactccgactctctcttcttcactgttgtggaaaaTtctcaagtctatctataatgtgtgcaagtccaacgccatcgaagccaggaaggggcgagcggaattgaagaagcagattacaactttccttgctcccccgatggctccgaggtcaatgaaagtgataaagtgttcgatgatccctttgccgacgaagctagtagtggtgttgttcaggagaaggaaggatggaaccaatgggtacaagaacaatgcaaaatttctaaacgacttgcaggatctgtgccttgaatcttcatgggacatagggcttagaatagtagcatacaaaattgactggaagtcacaaaacacagaacttcagatgagaaaatag
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| Protein seq | MQIGTTKPSFPEFQTIQSPKISRTHGDFHSKPPRPINRTCGQPAKNPGSSKNRFARHAMREQGVEEREEGRLTFVVEESSLSLSVLSCSRGPSRIKISAIPLVPRRASWPTPSTRLRMASGDGFDLPPRSQMVMILIVKGRRKLKSQMWKGVVIYCKGGHLGSRKLPPLKQVLQVLEPHEVDFMYNHKVEYDPGTTKGMLPFFAYLNKMIRKTLTPKDDDDNNVQSYTHNILARMRASPKKFDVFEFIWEEIRLTSFTPECSLGYAPILMKMIEQVTKLRFYKEVHHTGLKVRLEKPMTTPRRPRSTTKAARTQAPSTPTLSSSLLWKILKSIYNVCKSNAIEARKGRAELKKQITTFLAPPMAPRSMKVIKCSMIPLPTKLVVVLFRRRKDGTNGYKNNAKFLNDLQDLCLESSWDIGLRIVAYKIDWKSQNTELQMRK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0008580 | OsGoSa_10g0008580.01 | Chr10 | 13402364 | 13407304 | + | NAM | ||
| CDS seq | atgcagattggcacaaccaaaccttctttccccgaattccagacaatccaatcccccaaaatttctcgcacccacggcgatttccattccaaaccaccacggccaatcaacagaacctgcggccagccggccaagaacccaggatcatccaagaatcgctttgctaggcacgcaatgcgcgagcaaggggtggaggagagagaggaggggaGgctcacattcgtggttgaagagtcatcactctcactcagtgttctttcatgctcaagggggccttcaaggatcaaaatttctgctattccactcgttccaaggagagcttcatggcccacaccaagcacaagacttagaatggcaagcggcgacgggttcgatcttcctcctcggagtcaaatggtgatgattttgattgtaaagggaaggaggaaactcaagtcgcaaatgtggaaaggggtggtgatttactgcaaaggagggcacctaggaagccgaaagctaccaccgttgaaacaagtcttgcaggtcttggagcctcatgaggttgacttcatgtacaatcataaggtggagtacgaccctgggacaacaaagggtatgcttcctttctttgcctatctcaacaagatgattcgcaaaacactcactcccaaggatgacgatgacaacaatgtccaatcttacactcacaacattcttgcaaggatgagggcttctccgaagaaatttgatgtgtttgagttcatttgggaggagattcgcctcacatctttcactcctgagtgtagtcttggctatgctcccatattgatgaaaatgattgagcaagtcaccaaacttcgattctacaaggaggtgcaccacactggactcaaagtgaggctagagaaacccatgaccactcctaggaggccaaggtctaccactaaagctgcacgtactcaagctccctccactccgactctctcttcttcactgttgtggaaaaTtctcaagtctatctataatgtgtgcaagtccaacgccatcgaagccaggaaggggcgagcggaattgaagaagcagattacaactttccttgctcccccgatggctccgaggtcaatgaaagtgataaagtgttcgatgatccctttgccgacgaagctagtagtggtgttgttcaggagaaggaaggatggaaccaatgggtacaagaacaatgcaaaatttctaaacgacttgcaggatctgtgccttgaatcttcatgggacatagggcttagaatagtagcatacaaaattgactggaagtcacaaaacacagaacttcagatgagaaaatag
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| Protein seq | MQIGTTKPSFPEFQTIQSPKISRTHGDFHSKPPRPINRTCGQPAKNPGSSKNRFARHAMREQGVEEREEGRLTFVVEESSLSLSVLSCSRGPSRIKISAIPLVPRRASWPTPSTRLRMASGDGFDLPPRSQMVMILIVKGRRKLKSQMWKGVVIYCKGGHLGSRKLPPLKQVLQVLEPHEVDFMYNHKVEYDPGTTKGMLPFFAYLNKMIRKTLTPKDDDDNNVQSYTHNILARMRASPKKFDVFEFIWEEIRLTSFTPECSLGYAPILMKMIEQVTKLRFYKEVHHTGLKVRLEKPMTTPRRPRSTTKAARTQAPSTPTLSSSLLWKILKSIYNVCKSNAIEARKGRAELKKQITTFLAPPMAPRSMKVIKCSMIPLPTKLVVVLFRRRKDGTNGYKNNAKFLNDLQDLCLESSWDIGLRIVAYKIDWKSQNTELQMRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22394 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008320 | RBH | 0.0 | 0.0 | 0.784756 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008370 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008240 | RBH | 0.0 | 0.0 | 3.757959 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008390 | RBH | 0.000000 | 3.596972 | 1.654111 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0200300 | RBH | 0.3596195 | 0.8469365 | 5.284324 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008371 | RBH | 0.0 | 0.0 | 0.302240 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0214700 | RBH | 0.625565 | 0.8473445 | 10.789392 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
