Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_09g0007680 | OGI:04046690 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr09:12957893-12958577 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATAGAAATTCAAAAAGAAATCGATACAATCCATGTCATAATACATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGCAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCAAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGATAGACTTCCCCTCCAAACAATTCACGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAG
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| CDS seq | ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAAATGGACTCAGGCTCAAGTTCCGAAGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGATAGACTTCCCCTCCAAACAATTCACGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAG
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| Protein seq | MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKNGLRLKFRRAIEELEKDLQKEVNSVNQRLNIGIEKAVSREKKLRVPNASKKIDFPSKQFTLKLIIAAIQFELSMEY |
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| Function | 30S ribosomal protein S3, chloroplastic [UniProtKB/Swiss-Prot:P0C485] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0007680 | OsIR64_09g0007680.01 | Chr09 | 12957893 | 12958577 | + | NAM | ||
| CDS seq | ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAAATGGACTCAGGCTCAAGTTCCGAAGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGATAGACTTCCCCTCCAAACAATTCACGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAG
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| Protein seq | MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKNGLRLKFRRAIEELEKDLQKEVNSVNQRLNIGIEKAVSREKKLRVPNASKKIDFPSKQFTLKLIIAAIQFELSMEY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.436884 | 0.387934 | 1.718396 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007530 | RBH | 0.000000 | 0.000000 | 5.137144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007520 | RBH | 9.556573 | 16.439474 | 23.443087 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007740 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007580 | RBH | 0.167405 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007710 | RBH | 0.000000 | 0.0 | 8.603741 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205600 | SBH | 11.7140845 | 7.2092875 | 6.559548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007630 | RBH | 17.575420 | 1.935400 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007430 | RBH | 29.495934 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007350 | SBH | 276.074738 | 184.596802 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007350 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007420 | SBH | 31.952805 | 54.269058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007970 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007780 | RBH | 46.615162 | 81.337204 | 183.162888 |
