Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsIR64_08g0021950 | OGI:08073710 | 10/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr08:27310905-27317752 | ||||||||
Gene Symbol | Os_F0488 | ||||||||||
DNA seq | TTATCTGAGACACTCATCTGAGATCCCCTCTTCGGTGGGGATCGACCGGATGTTGGCGCGTCGGCGCCTGCTCTCCACCGCGCGTCGGCTCAAAGGTCTGGAGCTTCGGGAGTTCGTGTGGAGCTTGTCGATCCGGAGGGAGCTCTTGTTGGGGGTGTGGGTTTTGGTTGGAGTCGACTGAATTACACGCCAAATATGCCCTAAAATCTACTACTCCCAAATATGCAGCAAATGTACTTGTGCCTTGTTTGGCTCAATAATGTAATGTGATGAGAAAGAACAAAAACAATACGGGGACTTGGCGCAAGATAATCATGAATTAACAGTAGTGTTTCATATGGCTGTATACACCTCCGTTGGTATATAGAACCCGGGTTTTATAAATTTCCATTATCTAAAAAACAGTAGTGTTTCCACCAACTCAGATTACAAGACTTCCACGCGAGAAATTGGAAAACAACCTTAAGGTGCACCCATGCACATACTAATTCTTAATCGATCGCACACAATGCGATCGCTCATTATTATCATGGCCTAATACGGACGATCGATTCCACACAGGGCAGCATGTAGTGGGCAACAGGGAGCTCACCAATGCGGAATTTTATCCCATTCCGGTGATCATACGTCAAGTCACGCGCCATGTCGATCACTTCTTCGAGCGACCCATCACGCAGGTCGCACTTGTAAACGTACCAGCCATCAATGGATAGGAAAACCTGTTCTCGATCGGCCAGAGAAACGCAGGCGGATACATTGAGCTGTGTTATAAAAATAGATACACAACGGAGACACGAATTTTACATGGAAAATCTTTGTGGGAAAAAACCACGGGCGCCGACCGGCAATGATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCGTAATGGGAACGTCACCCCTTCCCGTACGGCTTATAAGAGTATATATAGGGGAAATAGAAAGACACCTAATAGGAATTCCTACTAGGAAACTAATCCGAATATATTATGGGCCCAAAATTTGGATCACATATTTAACAATCTCCACCTTGAGACGAATTTCCTCTTGTAGCATAAAAACATCAATCACCAAAAAAACCTCATGTAGGTAAAATCACCGCGCGCCAAATAGTCTCTAGGACTATACTGTAACACCAACCAAGCTTGAGCAAAGCTCAAATTTAGTAGCAGAAACTGGCTTTGTCATCATATCAGCTGGGTTATCATGAGTACTTATCTTGCATACCTTGACATCACCTTCAGCAATCACACCTCGAATAAAGTGATATCTCACATCAATGTGCTTTGTTCTCTCATGGAACATTTGATCCTTTGTAAGGCATATTGCACTTTGACTATCACAAAATATATTAATGCAAGACGTAACTCCACAAAGCTCAGTGTACAAACCTCTAAGCCAAATAGCTTCTTTACAAGCTTCAGAAATAGCCATATACTCTGCTTCAGTAGTAGATAAGGCAACAGTTGCTTGCAAACTTGCCTTCTAACTAACAGCACATCCTCCAATAGTGAAAACATAACCTGTGAGCGATCTTCTCCTATCCAAATCTCCAGCAAAATCTGAATCCACATAACCAACAAGTCCATCTCTAGATCTCCCAAACAGCAAACAAGCACTAGATGTACCACGTAGGTATCTGAAAATCCATTGAACAGCTTTCCAATGCTCTTTGCCAGGATTAGCCATGTATCTACTGACAACACTCAATGCATGTGATAAGTCAGGACGAGAACATACCATGGCATACATAAGTGAACCAACTGCACTTGAATAAGGAACTCTAGACATGTACTCAACATCATAATCTAACTGTGGACATAAATCTGAAGATAATCTGAAATGTACAGCTAACGGAGTACTCACTGGTTTTGCATCATGCATATTGAAACGACGAAGAACTTTTTCACTATAACCTTTCTGACTAAGATATAACTTGCCAGAATGTCTTTCTCTAGTAATTTCCATACCGAGAATTTTCTTCGCTGCACCCAAATCCTTCATCTCAAATTCACTACTCAATTGTGCCTTCAACTTTTCTATCTCTGATTTATCTTTTGCAGCAATCAACATATCATCGACATAAAGAAGCAAATATATAGCTGAACCATCAACAACTTTAAGATAAACACAGCTATCATAATTGGATCTTCTAAACTTCTGAGAAAGCATGAAAGAGTCAAATCTCTTATACCACTGTCTAGGTGACTACTTCAACCCATAAAGAGATTTCTTCAACCTACAGATTAGGTTCTCTTTTCCAGGAACAACAAAACCTTCAGGTTGCTCCATATAAATGTCCTCTTCTAACTCCCCATGTAAAAATGCAGTCTTACCATCCATTTGCTCTAGTTCATAATCATGCATTGCAACAATACTGAGTAAAGTACGAATTGAATTATGCTTCACAACAGGGGAAAAGATATCATTGAAATCAATATCTGGAATCTGGCTATAACCTTTAGCAACTAACCTTGCTTTGTACCTTGCCTCATCACTTGGAGACATACCTTCCTTTCTTTTGAAGATCCACTTGCAACGGATAGGTTTCTTCTCCTTTGGCAACTTCACCAATTCCCAAGTATGATTCTTTTCAAGTGACTCCATCTCATCATGCATAGCAGTTATCCATCTATTGCAAACATCAGAAACAATAGCCTCAGAATATGTAGAAGGTTCGGCATTACCTTCAATTTCTTCTGCTACACTCAAAGCATAAGCAACTATGTTCGCTTCTTCAATATATCTTCGAGGAGGTTTAATATTTCTTTTAGGCTTATCTTTTGCAATAGAACGTTTTGGAGACTGCTGAACAATAGAAGAATCTGAATCTTCAATAACAGGTGCATCTTGGTTAATAGCAACATCTTCTTTTTCTGGTGCATGCCCTGAACTGATCAAGTGCTCCACCTGCACACTTGCTTTCTCCTGACTCTCAACAGGAACATTAGTAGAAGGTTTGTCATGTAACATAACTGATTCATGGAAGACAATATTTCTACTAATCACAACCTTTTTGGTTTCAGGACACCATAACTTATAGCCTTTCACACCAGACGAATAACCAAGAAAAATGCACTTAATAACTCTAGGCTCTAATTTACCATTATCAACATGAGCATAAGCAGTACAACCAAATACTCTTAAGTCTGAATAATTTGCTGGGGAACCAGACCATACCTCAATTGGAGTCTTCTTATCAATGGCATAACTAGGTGATTGATTGATAAGATAACAAGCAGTGGAAACAGCTTCCGCCCAAAACTGTTTAGGCAAACCTGCATTAGACAACATACAACGGGCCTTTGATATAATTGTCCTGTTCATACGCTCAGCTACGCCATTTTGTTGAGGTGTGTGAGGAACGGTGTAGTGACGCACAATGCCTTCAGACTTGCAATATGATTTAAATATCTTAGAACAGAACTCCATCCCATTGTCAGTACGAAGGATTTTCACCTTCCTTTCAGTTTGTCTTTCAACCATAGTTTTCCACTCTTTAAACACATCAAAAGCTTGATATTTGTGCTTCAAGAAATAAGGCCAAACTTTTCGCGAATAATCATCAACGATAGTCATCATGTAACGAGCACCTCCAAAAGATGTCTTACGAGCAGGCCCCCATAAATCAGAATGCACATAATCAAGAATACCTTCAGTAGTATGTGTAGATGTGTTGAACTTCACCCTCTTATGCTTGCCAAAGATGCAATGCTCACAAAATTTGAGCTTCCCGATGCTTTGTCCATCTAGCAATCATCGCTTGTTCAATTCTGCCAAACCAATTTCACTCATATGCCCAAGACGCATATGCCAAAGATTAGTAGCATCGGAATTAGATAATGAATCAGAAACTGCTGCAACATTACCTAATATAGTTGTACCTCGCAGATGGTATAGGTTGGCAGATTTAATATCAGCTTTCATCACAACAAGAGAGCCTTTAGTTACCTTCAAAATTCCGTCTCCACCGGAATATTTATACCCTTTGCGATCAAGAGTACATAAAGAGATGAGACTTCTCTTCAAATTTGGAATATGCCGCACATCTGACAATGTTCTAATACAGCCATCAAACATCTCGATCTGAACTGTTCCAATACCTGCAACCTCGCATGGTGTATCATCACCCATCAAAATAGTACCACCTTGAATAACTTCATAAGTGGCAAACCAATCCCTATTCGGGCACATGTGATAGGTGCATGCAGTATCAAGAATCCACTGGTCACTAGTTTGTGCACAACCAACATAAGCAACAAGCAATTTTGCATCAGACTTCTCATCAGTAACAACTGCGGCTTTACCTTCCTCTTCTTTCTTACCTTTTGGTACATATTTTCCGGTTCTCTTGTCTTTATCCTGTAGCTTCCAACACTCAGAGATATCATGTCCATCTCTCTTGCAGTATTTGCATGACTTATACCTGCCTCTGGACTTTGATCTCCCATGATAGCTACTTGAGCTTTTATCTCTTGATTTGTTGTTTGTGTTCTTCTCCTGTTGCCTGCCTCGAACAACCAAGCCTTCTGCTTGTGAATTTGAACCTTCAGAGGGTACCATCTTCTTCATCTTTTCTTTGGCATGCAAAGCATCATAAATAAACTTCTTTCAAAGTTAGAGTATCACGGCTATAAAGTATAGTATCCCTGAAGTTTGCATATGAGCTAGGCAATGAACACAATAGAATAAGGCCTAAATCCTCTTCATCATACTTTATCTCCATAGACTCAAGGTCAGCAACAATTTCCTTGAAAGCGGAGAGATGGTCCATAACGAACTCATCATCTTGCAACTTGTGCAAAAATAACTTTTGCTTCAGGTGCATCTTACTGGTAAGATCCTTAGTCATGCATATCTGTTCCAGCTTCAACCACAGCCCAGCGGCTGTCTCCTCCTTAAGCACCTCCTGCAAAATATTGTTAGATAGATGAAGATGAATATATGACATAGCCTTACGATCCCTTTTCTTCTCATCAACAGACCAATCCTGTGTCCTCTTATCAAATCTAGAAAGCGCATCATCGAGGTCTTGTTGTGCAAGAACGGCTCGCATCTTCACTTGCTAAAGTGAGAATCTTGTGTCTCGGTCCAGGAGCGGTAGATCATACTTCAAACTCGCCATGGGAATTAATCCTGAATTTGCTACTAAGAAATTAGGGTAAACCTAGCAAAAACGCGAAACCTGGTACACTTCTCGTGTGTCTGTAGCGTAGATTAGTAAACTTCCTGGTACACAAGCTTTGGTGCGCGTAGCAATTTTGCCTCTGAAAAAACAACCTACAGAAGCTCTCGGTGGATTGGTTTTTCGCCTCGGGAACCGTGCGCTGCAGATGGATTGGCTTCGGCTGATTTTCTTCTCCCGCACTGCTGTACTGCTGCTTTTCTGACACGCGCGCGGCACGAAGGACGACGTCGACTCGGAGTTGACGGCGACTATGCTTTGGATTGGATTTCGCCGAACAGAATTTCGACGGAATGACGAAAACGACGACGCGTACCGCCGATTAGATCGATTTCTTCGATCCGAAAAACCACGCCGGTGGTCGGGACTGCAGTAGATCTATCTTCAATGCTCTGATACCACTTGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGAGAAAAAAACAAGGGCGCCAATCGGCAATGATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCATAATGGGAACGTCACACCTTTCCGTACGGCTTACAAGAGTATATATAGGGGAAATAGAAAGACACCTAATAAAAATTTCTACTAGAAAACTAATCCGAATATATTATGGATCCAAAATTCGGATCACATATTTAACAAGCTGTCTAGGAATCGGCAAGCGGATGCGGCAGCGCAGCGACCAAGCAAGGCTTGGTCCATCTGCTGCCAACCAAATGGCTAACTCACATGGCGAGGCGGAGTGGACATAGCACAACTTGCCACCAAGCTGGCATAGCATGTCGTTGTTGCTCAGAAAGCCCCTGCATGGAGGGTTGGGATGGACGGTGAATGTTTCATCGCGCAAGCTAAATCGAAGGATAACATGTGAGCTCACCTTGCTAAGGCCATGGCCGGTCGTGGAGTGGAGAGCGCTCCAGTAGAAGAACCCTGGGAGACAGATCGGAGTCCTAGCATTGATAGGATATGGCGGATCTATGGTCGCCTTCCATTTCCAACAATCTTCTCCATCACCAAGAGTCAAGATCTCATGTCCAGCCCGGGATTCTCCTCCGCTGTGTGATGAGCGGAGGAAGTGCCTAGCCACCTTGTACTTGCCACTCCAAGGGTCGAACCCGAAGGCGACCCTGTGCTCCAGTGCAACACTGTGGCTTCCTCACTGTGTGCTTCCTCAGGTTGCACACGAAGATCTCTCCCGAGACGCAAGGGATCAGGATGAGGCCGTCGCAGTGCAGAGGCATGCTGAACATTGGGATCCCACGGGGAAATCTCTTCTCTAGGATGAGCTCGGCAACCTTGCTCTGCCCTGGCTGGAACCTGTAGAAAGTGACACCCTGAAGTTTAAACTTCTTGGGGTTACTCAGAAACATCCGTGGCATGACGACCATGGATGGCCTGGGCCTGGAATGCTCCAGGTGGCGGCGCGCGAAGCTGGTGCTGATTATGGTGGCGCGCCACAGCTTGCACACGGATTGGAATCGCACAAGGCACTTCGCGGGAAGTCGGACGAGGATTTCGGAGAAAAGTATATCATCAGGGATAAAGCCACCGCCGGCGGCGGCGGCGGCGGCGGAAGCTGACCGCGGCGGCGGCGCCATCAGACGGCGTCGTTTTGGGAATGGGTGGTTCTCCAT
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CDS seq | ATGGAGAACCACCCATTCCCAAAACGACGCCGTCTGATGGCGCCGCCGCCGCGGTCAGCTTCCGCCGCCGCCGCCGCCGCCGGCGGTGGCTTTATCCCTGATGATATACTTTTCTCCGAAATCCTCGTCCGACTTCCCGCGAAGTGCCTTGTGCGATTCCAATCCGTGTGCAAGCTGTGGCGCGCCACCATAATCAGCACCAGCTTCGCGCGCCGCCACCTGGAGCATTCCAGGCCCAGGCCATCCATGGTCGTCATGCCACGGATGTTTCTGAGTAACCCCAAGAAGTTTAAACTTCAGGGTGTCACTTTCTACAGGTTCCAGCCAGGGCAGAGCAAGGTTGCCGAGCTCATCCTAGAGAAGAGATTTCCCCGTGGGATCCCAATGTTCAGCATGCCTCTGCACTGCGACGGCCTCATCCTGATCCCTTGCGTCTCGGGAGAGATCTTCGTTGTTGCACTGGAGCACAGGGTCGCCTTCGGGTTCGACCCTTGGAGTGGCAAGTACAAGGTGGCTAGGCACTTCCTCCGCTCATCACACAGCGGAGGAGAATCCCGGGCTGGACATGAGATCTTGACTCTTGGTGATGGAGAAGATTGTTGGAAATGGAAGGCGACCATAGATCCGCCATATCCTATCAATGCTAGGACTCCGATCTGTCTCCCAGGGTTCTTCTACTGGAGCGCTCTCCACTCCACGACCGGCCATGGCCTTAGCAAGGTGAGCTCACATGTTATCCTTCGATTTAGCTTGCGCGATGAAACATTCACCGTCCATCCCAACCCTCCATGCAGGGGCTTTCTGAGCAACAACGACATGCTATGCCAGCTTGGTGGCAAGTTGTGCTATGTCCACTCCGCCTCGCCATGGCATATTTGGCGTGTAATTCAGTCGACTCCAACCAAAACCCACACCCCCAACAAGAGCTCCCTCCGGATCGACAAGCTCCACACGAACTCCCGAAGCTCCAGACCTTTGAGCCGACGCGCGGTGGAGAGCAGGCGCCGACGCGCCAACATCCGGTCGATCCCCACCGAAGAGGGGATCTCAGATGAGTGTCTCAGATAA
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Protein seq | MENHPFPKRRRLMAPPPRSASAAAAAAGGGFIPDDILFSEILVRLPAKCLVRFQSVCKLWRATIISTSFARRHLEHSRPRPSMVVMPRMFLSNPKKFKLQGVTFYRFQPGQSKVAELILEKRFPRGIPMFSMPLHCDGLILIPCVSGEIFVVALEHRVAFGFDPWSGKYKVARHFLRSSHSGGESRAGHEILTLGDGEDCWKWKATIDPPYPINARTPICLPGFFYWSALHSTTGHGLSKVSSHVILRFSLRDETFTVHPNPPCRGFLSNNDMLCQLGGKLCYVHSASPWHIWRVIQSTPTKTHTPNKSSLRIDKLHTNSRSSRPLSRRAVESRRRRANIRSIPTEEGISDECLR |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsIR64_08g0021950 | OsIR64_08g0021950.01 | Chr08 | 27310905 | 27317752 | - | NAM | ||
CDS seq | ATGGAGAACCACCCATTCCCAAAACGACGCCGTCTGATGGCGCCGCCGCCGCGGTCAGCTTCCGCCGCCGCCGCCGCCGCCGGCGGTGGCTTTATCCCTGATGATATACTTTTCTCCGAAATCCTCGTCCGACTTCCCGCGAAGTGCCTTGTGCGATTCCAATCCGTGTGCAAGCTGTGGCGCGCCACCATAATCAGCACCAGCTTCGCGCGCCGCCACCTGGAGCATTCCAGGCCCAGGCCATCCATGGTCGTCATGCCACGGATGTTTCTGAGTAACCCCAAGAAGTTTAAACTTCAGGGTGTCACTTTCTACAGGTTCCAGCCAGGGCAGAGCAAGGTTGCCGAGCTCATCCTAGAGAAGAGATTTCCCCGTGGGATCCCAATGTTCAGCATGCCTCTGCACTGCGACGGCCTCATCCTGATCCCTTGCGTCTCGGGAGAGATCTTCGTTGTTGCACTGGAGCACAGGGTCGCCTTCGGGTTCGACCCTTGGAGTGGCAAGTACAAGGTGGCTAGGCACTTCCTCCGCTCATCACACAGCGGAGGAGAATCCCGGGCTGGACATGAGATCTTGACTCTTGGTGATGGAGAAGATTGTTGGAAATGGAAGGCGACCATAGATCCGCCATATCCTATCAATGCTAGGACTCCGATCTGTCTCCCAGGGTTCTTCTACTGGAGCGCTCTCCACTCCACGACCGGCCATGGCCTTAGCAAGGTGAGCTCACATGTTATCCTTCGATTTAGCTTGCGCGATGAAACATTCACCGTCCATCCCAACCCTCCATGCAGGGGCTTTCTGAGCAACAACGACATGCTATGCCAGCTTGGTGGCAAGTTGTGCTATGTCCACTCCGCCTCGCCATGGCATATTTGGCGTGTAATTCAGTCGACTCCAACCAAAACCCACACCCCCAACAAGAGCTCCCTCCGGATCGACAAGCTCCACACGAACTCCCGAAGCTCCAGACCTTTGAGCCGACGCGCGGTGGAGAGCAGGCGCCGACGCGCCAACATCCGGTCGATCCCCACCGAAGAGGGGATCTCAGATGAGTGTCTCAGATAA
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Protein seq | MENHPFPKRRRLMAPPPRSASAAAAAAGGGFIPDDILFSEILVRLPAKCLVRFQSVCKLWRATIISTSFARRHLEHSRPRPSMVVMPRMFLSNPKKFKLQGVTFYRFQPGQSKVAELILEKRFPRGIPMFSMPLHCDGLILIPCVSGEIFVVALEHRVAFGFDPWSGKYKVARHFLRSSHSGGESRAGHEILTLGDGEDCWKWKATIDPPYPINARTPICLPGFFYWSALHSTTGHGLSKVSSHVILRFSLRDETFTVHPNPPCRGFLSNNDMLCQLGGKLCYVHSASPWHIWRVIQSTPTKTHTPNKSSLRIDKLHTNSRSSRPLSRRAVESRRRRANIRSIPTEEGISDECLR
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0518300 | RBH | 0.0 | 0.0 | 0.457255 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40640 | SBH | 0.0 | 0.0 | 0.029648 |
Nipponbare | IRGSP 1.0 | RAP-db | Os08g0518300 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022290 | SBH | 0.153640 | 1.057604 | 0.636885 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022180 | SBH | 0.0 | 0.714792 | 0.212058 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022070 | SBH | 0.610888 | 0.646780 | 0.946151 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014540 | SBH | 0.041680 | 0.121261 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022060 | SBH | 1.565557 | 3.180198 | 3.188009 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0410000 | RBH | 0.0029625 | 0.0048445 | 0.008262 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0431100 | SBH | 0 | 0 | 0.099567 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021300 | SBH | 0.080144 | 0.098504 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021610 | SBH | 0.111084 | 0.000000 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021420 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022270 | SBH | 0.061258 | 0.119006 | 0.222317 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021620 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021790 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021960 | SBH | 0.0 | 0.0 | 0.000000 |