Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_08g0021950 OGI:08073710 | 10/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr08:27310905-27317752
Gene Symbol Os_F0488
DNA seq

TTATCTGAGACACTCATCTGAGATCCCCTCTTCGGTGGGGATCGACCGGATGTTGGCGCGTCGGCGCCTGCTCTCCACCGCGCGTCGGCTCAAAGGTCTGGAGCTTCGGGAGTTCGTGTGGAGCTTGTCGATCCGGAGGGAGCTCTTGTTGGGGGTGTGGGTTTTGGTTGGAGTCGACTGAATTACACGCCAAATATGCCCTAAAATCTACTACTCCCAAATATGCAGCAAATGTACTTGTGCCTTGTTTGGCTCAATAATGTAATGTGATGAGAAAGAACAAAAACAATACGGGGACTTGGCGCAAGATAATCATGAATTAACAGTAGTGTTTCATATGGCTGTATACACCTCCGTTGGTATATAGAACCCGGGTTTTATAAATTTCCATTATCTAAAAAACAGTAGTGTTTCCACCAACTCAGATTACAAGACTTCCACGCGAGAAATTGGAAAACAACCTTAAGGTGCACCCATGCACATACTAATTCTTAATCGATCGCACACAATGCGATCGCTCATTATTATCATGGCCTAATACGGACGATCGATTCCACACAGGGCAGCATGTAGTGGGCAACAGGGAGCTCACCAATGCGGAATTTTATCCCATTCCGGTGATCATACGTCAAGTCACGCGCCATGTCGATCACTTCTTCGAGCGACCCATCACGCAGGTCGCACTTGTAAACGTACCAGCCATCAATGGATAGGAAAACCTGTTCTCGATCGGCCAGAGAAACGCAGGCGGATACATTGAGCTGTGTTATAAAAATAGATACACAACGGAGACACGAATTTTACATGGAAAATCTTTGTGGGAAAAAACCACGGGCGCCGACCGGCAATGATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCGTAATGGGAACGTCACCCCTTCCCGTACGGCTTATAAGAGTATATATAGGGGAAATAGAAAGACACCTAATAGGAATTCCTACTAGGAAACTAATCCGAATATATTATGGGCCCAAAATTTGGATCACATATTTAACAATCTCCACCTTGAGACGAATTTCCTCTTGTAGCATAAAAACATCAATCACCAAAAAAACCTCATGTAGGTAAAATCACCGCGCGCCAAATAGTCTCTAGGACTATACTGTAACACCAACCAAGCTTGAGCAAAGCTCAAATTTAGTAGCAGAAACTGGCTTTGTCATCATATCAGCTGGGTTATCATGAGTACTTATCTTGCATACCTTGACATCACCTTCAGCAATCACACCTCGAATAAAGTGATATCTCACATCAATGTGCTTTGTTCTCTCATGGAACATTTGATCCTTTGTAAGGCATATTGCACTTTGACTATCACAAAATATATTAATGCAAGACGTAACTCCACAAAGCTCAGTGTACAAACCTCTAAGCCAAATAGCTTCTTTACAAGCTTCAGAAATAGCCATATACTCTGCTTCAGTAGTAGATAAGGCAACAGTTGCTTGCAAACTTGCCTTCTAACTAACAGCACATCCTCCAATAGTGAAAACATAACCTGTGAGCGATCTTCTCCTATCCAAATCTCCAGCAAAATCTGAATCCACATAACCAACAAGTCCATCTCTAGATCTCCCAAACAGCAAACAAGCACTAGATGTACCACGTAGGTATCTGAAAATCCATTGAACAGCTTTCCAATGCTCTTTGCCAGGATTAGCCATGTATCTACTGACAACACTCAATGCATGTGATAAGTCAGGACGAGAACATACCATGGCATACATAAGTGAACCAACTGCACTTGAATAAGGAACTCTAGACATGTACTCAACATCATAATCTAACTGTGGACATAAATCTGAAGATAATCTGAAATGTACAGCTAACGGAGTACTCACTGGTTTTGCATCATGCATATTGAAACGACGAAGAACTTTTTCACTATAACCTTTCTGACTAAGATATAACTTGCCAGAATGTCTTTCTCTAGTAATTTCCATACCGAGAATTTTCTTCGCTGCACCCAAATCCTTCATCTCAAATTCACTACTCAATTGTGCCTTCAACTTTTCTATCTCTGATTTATCTTTTGCAGCAATCAACATATCATCGACATAAAGAAGCAAATATATAGCTGAACCATCAACAACTTTAAGATAAACACAGCTATCATAATTGGATCTTCTAAACTTCTGAGAAAGCATGAAAGAGTCAAATCTCTTATACCACTGTCTAGGTGACTACTTCAACCCATAAAGAGATTTCTTCAACCTACAGATTAGGTTCTCTTTTCCAGGAACAACAAAACCTTCAGGTTGCTCCATATAAATGTCCTCTTCTAACTCCCCATGTAAAAATGCAGTCTTACCATCCATTTGCTCTAGTTCATAATCATGCATTGCAACAATACTGAGTAAAGTACGAATTGAATTATGCTTCACAACAGGGGAAAAGATATCATTGAAATCAATATCTGGAATCTGGCTATAACCTTTAGCAACTAACCTTGCTTTGTACCTTGCCTCATCACTTGGAGACATACCTTCCTTTCTTTTGAAGATCCACTTGCAACGGATAGGTTTCTTCTCCTTTGGCAACTTCACCAATTCCCAAGTATGATTCTTTTCAAGTGACTCCATCTCATCATGCATAGCAGTTATCCATCTATTGCAAACATCAGAAACAATAGCCTCAGAATATGTAGAAGGTTCGGCATTACCTTCAATTTCTTCTGCTACACTCAAAGCATAAGCAACTATGTTCGCTTCTTCAATATATCTTCGAGGAGGTTTAATATTTCTTTTAGGCTTATCTTTTGCAATAGAACGTTTTGGAGACTGCTGAACAATAGAAGAATCTGAATCTTCAATAACAGGTGCATCTTGGTTAATAGCAACATCTTCTTTTTCTGGTGCATGCCCTGAACTGATCAAGTGCTCCACCTGCACACTTGCTTTCTCCTGACTCTCAACAGGAACATTAGTAGAAGGTTTGTCATGTAACATAACTGATTCATGGAAGACAATATTTCTACTAATCACAACCTTTTTGGTTTCAGGACACCATAACTTATAGCCTTTCACACCAGACGAATAACCAAGAAAAATGCACTTAATAACTCTAGGCTCTAATTTACCATTATCAACATGAGCATAAGCAGTACAACCAAATACTCTTAAGTCTGAATAATTTGCTGGGGAACCAGACCATACCTCAATTGGAGTCTTCTTATCAATGGCATAACTAGGTGATTGATTGATAAGATAACAAGCAGTGGAAACAGCTTCCGCCCAAAACTGTTTAGGCAAACCTGCATTAGACAACATACAACGGGCCTTTGATATAATTGTCCTGTTCATACGCTCAGCTACGCCATTTTGTTGAGGTGTGTGAGGAACGGTGTAGTGACGCACAATGCCTTCAGACTTGCAATATGATTTAAATATCTTAGAACAGAACTCCATCCCATTGTCAGTACGAAGGATTTTCACCTTCCTTTCAGTTTGTCTTTCAACCATAGTTTTCCACTCTTTAAACACATCAAAAGCTTGATATTTGTGCTTCAAGAAATAAGGCCAAACTTTTCGCGAATAATCATCAACGATAGTCATCATGTAACGAGCACCTCCAAAAGATGTCTTACGAGCAGGCCCCCATAAATCAGAATGCACATAATCAAGAATACCTTCAGTAGTATGTGTAGATGTGTTGAACTTCACCCTCTTATGCTTGCCAAAGATGCAATGCTCACAAAATTTGAGCTTCCCGATGCTTTGTCCATCTAGCAATCATCGCTTGTTCAATTCTGCCAAACCAATTTCACTCATATGCCCAAGACGCATATGCCAAAGATTAGTAGCATCGGAATTAGATAATGAATCAGAAACTGCTGCAACATTACCTAATATAGTTGTACCTCGCAGATGGTATAGGTTGGCAGATTTAATATCAGCTTTCATCACAACAAGAGAGCCTTTAGTTACCTTCAAAATTCCGTCTCCACCGGAATATTTATACCCTTTGCGATCAAGAGTACATAAAGAGATGAGACTTCTCTTCAAATTTGGAATATGCCGCACATCTGACAATGTTCTAATACAGCCATCAAACATCTCGATCTGAACTGTTCCAATACCTGCAACCTCGCATGGTGTATCATCACCCATCAAAATAGTACCACCTTGAATAACTTCATAAGTGGCAAACCAATCCCTATTCGGGCACATGTGATAGGTGCATGCAGTATCAAGAATCCACTGGTCACTAGTTTGTGCACAACCAACATAAGCAACAAGCAATTTTGCATCAGACTTCTCATCAGTAACAACTGCGGCTTTACCTTCCTCTTCTTTCTTACCTTTTGGTACATATTTTCCGGTTCTCTTGTCTTTATCCTGTAGCTTCCAACACTCAGAGATATCATGTCCATCTCTCTTGCAGTATTTGCATGACTTATACCTGCCTCTGGACTTTGATCTCCCATGATAGCTACTTGAGCTTTTATCTCTTGATTTGTTGTTTGTGTTCTTCTCCTGTTGCCTGCCTCGAACAACCAAGCCTTCTGCTTGTGAATTTGAACCTTCAGAGGGTACCATCTTCTTCATCTTTTCTTTGGCATGCAAAGCATCATAAATAAACTTCTTTCAAAGTTAGAGTATCACGGCTATAAAGTATAGTATCCCTGAAGTTTGCATATGAGCTAGGCAATGAACACAATAGAATAAGGCCTAAATCCTCTTCATCATACTTTATCTCCATAGACTCAAGGTCAGCAACAATTTCCTTGAAAGCGGAGAGATGGTCCATAACGAACTCATCATCTTGCAACTTGTGCAAAAATAACTTTTGCTTCAGGTGCATCTTACTGGTAAGATCCTTAGTCATGCATATCTGTTCCAGCTTCAACCACAGCCCAGCGGCTGTCTCCTCCTTAAGCACCTCCTGCAAAATATTGTTAGATAGATGAAGATGAATATATGACATAGCCTTACGATCCCTTTTCTTCTCATCAACAGACCAATCCTGTGTCCTCTTATCAAATCTAGAAAGCGCATCATCGAGGTCTTGTTGTGCAAGAACGGCTCGCATCTTCACTTGCTAAAGTGAGAATCTTGTGTCTCGGTCCAGGAGCGGTAGATCATACTTCAAACTCGCCATGGGAATTAATCCTGAATTTGCTACTAAGAAATTAGGGTAAACCTAGCAAAAACGCGAAACCTGGTACACTTCTCGTGTGTCTGTAGCGTAGATTAGTAAACTTCCTGGTACACAAGCTTTGGTGCGCGTAGCAATTTTGCCTCTGAAAAAACAACCTACAGAAGCTCTCGGTGGATTGGTTTTTCGCCTCGGGAACCGTGCGCTGCAGATGGATTGGCTTCGGCTGATTTTCTTCTCCCGCACTGCTGTACTGCTGCTTTTCTGACACGCGCGCGGCACGAAGGACGACGTCGACTCGGAGTTGACGGCGACTATGCTTTGGATTGGATTTCGCCGAACAGAATTTCGACGGAATGACGAAAACGACGACGCGTACCGCCGATTAGATCGATTTCTTCGATCCGAAAAACCACGCCGGTGGTCGGGACTGCAGTAGATCTATCTTCAATGCTCTGATACCACTTGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGAGAAAAAAACAAGGGCGCCAATCGGCAATGATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCATAATGGGAACGTCACACCTTTCCGTACGGCTTACAAGAGTATATATAGGGGAAATAGAAAGACACCTAATAAAAATTTCTACTAGAAAACTAATCCGAATATATTATGGATCCAAAATTCGGATCACATATTTAACAAGCTGTCTAGGAATCGGCAAGCGGATGCGGCAGCGCAGCGACCAAGCAAGGCTTGGTCCATCTGCTGCCAACCAAATGGCTAACTCACATGGCGAGGCGGAGTGGACATAGCACAACTTGCCACCAAGCTGGCATAGCATGTCGTTGTTGCTCAGAAAGCCCCTGCATGGAGGGTTGGGATGGACGGTGAATGTTTCATCGCGCAAGCTAAATCGAAGGATAACATGTGAGCTCACCTTGCTAAGGCCATGGCCGGTCGTGGAGTGGAGAGCGCTCCAGTAGAAGAACCCTGGGAGACAGATCGGAGTCCTAGCATTGATAGGATATGGCGGATCTATGGTCGCCTTCCATTTCCAACAATCTTCTCCATCACCAAGAGTCAAGATCTCATGTCCAGCCCGGGATTCTCCTCCGCTGTGTGATGAGCGGAGGAAGTGCCTAGCCACCTTGTACTTGCCACTCCAAGGGTCGAACCCGAAGGCGACCCTGTGCTCCAGTGCAACACTGTGGCTTCCTCACTGTGTGCTTCCTCAGGTTGCACACGAAGATCTCTCCCGAGACGCAAGGGATCAGGATGAGGCCGTCGCAGTGCAGAGGCATGCTGAACATTGGGATCCCACGGGGAAATCTCTTCTCTAGGATGAGCTCGGCAACCTTGCTCTGCCCTGGCTGGAACCTGTAGAAAGTGACACCCTGAAGTTTAAACTTCTTGGGGTTACTCAGAAACATCCGTGGCATGACGACCATGGATGGCCTGGGCCTGGAATGCTCCAGGTGGCGGCGCGCGAAGCTGGTGCTGATTATGGTGGCGCGCCACAGCTTGCACACGGATTGGAATCGCACAAGGCACTTCGCGGGAAGTCGGACGAGGATTTCGGAGAAAAGTATATCATCAGGGATAAAGCCACCGCCGGCGGCGGCGGCGGCGGCGGAAGCTGACCGCGGCGGCGGCGCCATCAGACGGCGTCGTTTTGGGAATGGGTGGTTCTCCAT

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CDS seq

ATGGAGAACCACCCATTCCCAAAACGACGCCGTCTGATGGCGCCGCCGCCGCGGTCAGCTTCCGCCGCCGCCGCCGCCGCCGGCGGTGGCTTTATCCCTGATGATATACTTTTCTCCGAAATCCTCGTCCGACTTCCCGCGAAGTGCCTTGTGCGATTCCAATCCGTGTGCAAGCTGTGGCGCGCCACCATAATCAGCACCAGCTTCGCGCGCCGCCACCTGGAGCATTCCAGGCCCAGGCCATCCATGGTCGTCATGCCACGGATGTTTCTGAGTAACCCCAAGAAGTTTAAACTTCAGGGTGTCACTTTCTACAGGTTCCAGCCAGGGCAGAGCAAGGTTGCCGAGCTCATCCTAGAGAAGAGATTTCCCCGTGGGATCCCAATGTTCAGCATGCCTCTGCACTGCGACGGCCTCATCCTGATCCCTTGCGTCTCGGGAGAGATCTTCGTTGTTGCACTGGAGCACAGGGTCGCCTTCGGGTTCGACCCTTGGAGTGGCAAGTACAAGGTGGCTAGGCACTTCCTCCGCTCATCACACAGCGGAGGAGAATCCCGGGCTGGACATGAGATCTTGACTCTTGGTGATGGAGAAGATTGTTGGAAATGGAAGGCGACCATAGATCCGCCATATCCTATCAATGCTAGGACTCCGATCTGTCTCCCAGGGTTCTTCTACTGGAGCGCTCTCCACTCCACGACCGGCCATGGCCTTAGCAAGGTGAGCTCACATGTTATCCTTCGATTTAGCTTGCGCGATGAAACATTCACCGTCCATCCCAACCCTCCATGCAGGGGCTTTCTGAGCAACAACGACATGCTATGCCAGCTTGGTGGCAAGTTGTGCTATGTCCACTCCGCCTCGCCATGGCATATTTGGCGTGTAATTCAGTCGACTCCAACCAAAACCCACACCCCCAACAAGAGCTCCCTCCGGATCGACAAGCTCCACACGAACTCCCGAAGCTCCAGACCTTTGAGCCGACGCGCGGTGGAGAGCAGGCGCCGACGCGCCAACATCCGGTCGATCCCCACCGAAGAGGGGATCTCAGATGAGTGTCTCAGATAA

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Protein seq

MENHPFPKRRRLMAPPPRSASAAAAAAGGGFIPDDILFSEILVRLPAKCLVRFQSVCKLWRATIISTSFARRHLEHSRPRPSMVVMPRMFLSNPKKFKLQGVTFYRFQPGQSKVAELILEKRFPRGIPMFSMPLHCDGLILIPCVSGEIFVVALEHRVAFGFDPWSGKYKVARHFLRSSHSGGESRAGHEILTLGDGEDCWKWKATIDPPYPINARTPICLPGFFYWSALHSTTGHGLSKVSSHVILRFSLRDETFTVHPNPPCRGFLSNNDMLCQLGGKLCYVHSASPWHIWRVIQSTPTKTHTPNKSSLRIDKLHTNSRSSRPLSRRAVESRRRRANIRSIPTEEGISDECLR

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_08g0021950 OsIR64_08g0021950.01 Chr08 27310905 27317752 - NAM
CDS seq

ATGGAGAACCACCCATTCCCAAAACGACGCCGTCTGATGGCGCCGCCGCCGCGGTCAGCTTCCGCCGCCGCCGCCGCCGCCGGCGGTGGCTTTATCCCTGATGATATACTTTTCTCCGAAATCCTCGTCCGACTTCCCGCGAAGTGCCTTGTGCGATTCCAATCCGTGTGCAAGCTGTGGCGCGCCACCATAATCAGCACCAGCTTCGCGCGCCGCCACCTGGAGCATTCCAGGCCCAGGCCATCCATGGTCGTCATGCCACGGATGTTTCTGAGTAACCCCAAGAAGTTTAAACTTCAGGGTGTCACTTTCTACAGGTTCCAGCCAGGGCAGAGCAAGGTTGCCGAGCTCATCCTAGAGAAGAGATTTCCCCGTGGGATCCCAATGTTCAGCATGCCTCTGCACTGCGACGGCCTCATCCTGATCCCTTGCGTCTCGGGAGAGATCTTCGTTGTTGCACTGGAGCACAGGGTCGCCTTCGGGTTCGACCCTTGGAGTGGCAAGTACAAGGTGGCTAGGCACTTCCTCCGCTCATCACACAGCGGAGGAGAATCCCGGGCTGGACATGAGATCTTGACTCTTGGTGATGGAGAAGATTGTTGGAAATGGAAGGCGACCATAGATCCGCCATATCCTATCAATGCTAGGACTCCGATCTGTCTCCCAGGGTTCTTCTACTGGAGCGCTCTCCACTCCACGACCGGCCATGGCCTTAGCAAGGTGAGCTCACATGTTATCCTTCGATTTAGCTTGCGCGATGAAACATTCACCGTCCATCCCAACCCTCCATGCAGGGGCTTTCTGAGCAACAACGACATGCTATGCCAGCTTGGTGGCAAGTTGTGCTATGTCCACTCCGCCTCGCCATGGCATATTTGGCGTGTAATTCAGTCGACTCCAACCAAAACCCACACCCCCAACAAGAGCTCCCTCCGGATCGACAAGCTCCACACGAACTCCCGAAGCTCCAGACCTTTGAGCCGACGCGCGGTGGAGAGCAGGCGCCGACGCGCCAACATCCGGTCGATCCCCACCGAAGAGGGGATCTCAGATGAGTGTCTCAGATAA

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Protein seq

MENHPFPKRRRLMAPPPRSASAAAAAAGGGFIPDDILFSEILVRLPAKCLVRFQSVCKLWRATIISTSFARRHLEHSRPRPSMVVMPRMFLSNPKKFKLQGVTFYRFQPGQSKVAELILEKRFPRGIPMFSMPLHCDGLILIPCVSGEIFVVALEHRVAFGFDPWSGKYKVARHFLRSSHSGGESRAGHEILTLGDGEDCWKWKATIDPPYPINARTPICLPGFFYWSALHSTTGHGLSKVSSHVILRFSLRDETFTVHPNPPCRGFLSNNDMLCQLGGKLCYVHSASPWHIWRVIQSTPTKTHTPNKSSLRIDKLHTNSRSSRPLSRRAVESRRRRANIRSIPTEEGISDECLR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0518300 RBH 0.0 0.0 0.457255
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g40640 SBH 0.0 0.0 0.029648
Nipponbare | IRGSP 1.0 | RAP-db Os08g0518300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0022290 SBH 0.153640 1.057604 0.636885
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0022180 SBH 0.0 0.714792 0.212058
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0022070 SBH 0.610888 0.646780 0.946151
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0014540 SBH 0.041680 0.121261 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0022060 SBH 1.565557 3.180198 3.188009
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0410000 RBH 0.0029625 0.0048445 0.008262
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0431100 SBH 0 0 0.099567
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0021300 SBH 0.080144 0.098504 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0021610 SBH 0.111084 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0021420 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0022270 SBH 0.061258 0.119006 0.222317
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0021620 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G021790 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0021960 SBH 0.0 0.0 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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