Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0021960 | OGI:08073710 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:27289553-27292754 | ||||||||
| Gene Symbol | Os_F0488 | ||||||||||
| DNA seq | CTAACTCACTAACTCAcatggcgaggcggagtggacatagcacaacttgccaccaagctggcatagcatgtcgttgttgctcagaaagcccctgcatggagggttgggatggacagtgaatgtttcatcgcgcaagctaaatcgaaggataacatgtgagctcaccttgctaaggccatggccggtcgtggagtggagagcgctccagtagaagaaccctgggagacagatcggagtcctagcattgataggatatggcggatctatggtcgccttccatttccaacaatcttctccatcaccaagagtcaagatctcatgtccagcccgggattctcctccgctgtgtgatgagcggaggaagtgcctagccaccttgtacttgccactccaagggtcgaacccgaaggcgaccctgtgctccagtgcaacactgtggcttcctctcggcagctcaacgaactcgctggtcgtcaggttgcacacgaagatctctcccgagacgcaagggatcaggatgaggccgtcgcagtgcagaggcatgctgaacattgggatcccacggggaaatctcttctctaggatgagctcggcaaccttgctctgccctggctggaacctgtagaaagtgacaccctgaagtttaaacttcttggggttactcagaaacatccgtggcatgacgaccatggatggcctgggcctggaatgctccaggtggcggcgcgcgaagctggtgctgattatggtggcgcgccacagcttgcacacggattggaatcgcacaaggcacttcgcgggaagtcggacgaggatttcggagaaaagtatatcatcagggataaagccaccgccggcggcggcggcggcggaagctgaccgcggcggcggcgccatcagacggcgtcgttttgggaatgggtggttctccatatggatctctcgtttgtttgtgccgattgccggcttcaatctgtgtgatcagatgattacataatcagaaaatagcacccaataattcgactcggattcagggatccactttatctaatttgactcggattcagttgatgaaccacattttcttttcgggggaaagaactaagtgttattatttacttatagtaatattaatcttatcttaatcttaactacttcgcgattttgggccgtcgtccaagttcgcacgcgacgtccacacgccccgactgcgttcgttcatgttcttcttcggttcacgcctaggcgcctagcaggcaggcaggggaagagcgggcgcacgacgtcggtgtccggtggcacaacggcggcggcagcggtgcctcgacgcgttcttggacacagcacaatggaggaaggcggcagccggcgtggggagcgagggaagagttgggaacgccggcggcgagaactcagtccagtcggaaaaaccaaactgatgtgaggtgtgagagaaggggggaaatagggaaaatggactcgccggagtgaggagatgctggtggcgagatgagacggcgagataagctctaggggaggagatcgctccgtcggggcagcggcggcggcggcggcggcgcgcacgcgtgccatgcgcgccctccggaaggaaggaggcggctggctcggctgggttgggccatgtgcgggagagaaggtcggaagggcccagaaagcaaggtgatgtcagcccaggagtgacatgactggttggaggatttcggcccaaaagaaatagaagagttttctgaatttttggagggatgattttaatggaatctaaaagaaattcaaaagaatttgtttggagataaattttaacaggtagttcatggactctatacatgtggggggaggggttggtttatttttggcaatggaagtttagaggggcttttattttgggggtattggtttaaaggaggagtatttgaataaaggaatagatatttgaatttggaggagagtctttggcaggaaaactttagaatatcattggaggcaaaaattatggaatttagataaaatgaaaaagacaaatggctaaaagagtaggttttagctaataaaaaataataaatcgggatgtttataaaattgaggaggaacttgaacaatagtatatagatgtttgtctttagaatatttttgagaatgggacttaaccaatggtgagtttggaagaaagaaacaagagcaaaggatggctaaaggaatgaatggtatatcgagaaattttttatatggggaatttggagcttattcaaaagtaaaacaaaagatttgaatagatggatttactaagagtcggccaaaaacttggttggctagtttcaaggatacaggaatttgaaatttatgcggaggtcgattggatctagatgaatttgggtaatgggaatttaataggaaataaatgtgctaataaaatagggtttcggtaaaaataaattgaaaggtttatgctactgttgcatgcctgatgacgcgaagacgacgacgaacaggccgtgccgcagcccggagattgactccttcggggaggcacgcggtgaagactcgacaagcgaaaaaaaaagcgaaacaggtgaccgtccccaggagcgagatcgctcctCccgggggcaacggaagcggaagcggtgagcggaggccttaggtcgtctgctctgataccatgttgaatagtacagggagagagaaatacagcgtaacgtggatacattgtattgagcctcaaggggccaatatacatggattacatggattcttaagtaaactcagaaatagagatggatactaatcctatcctaccataacaaatcggatacaatatgatcctatccatatactctaatagcctgcttgggaagtctctccagcagatggtccacacactcacaatggagaactacacaaacgggatcagtgaccaaaatgctgtaactgacaacttcgcaaagccaacatcaagtatagcacctgatgttctagcactctgagcggtgaactcggcatcatcttctccagcaacatcaaccccatctgagttgcctctccaagctcttgcattgagcttgagcactccatctttgtcgacgacaaccacccgccgtgagatctgaacgacgccgtcgccatcgacgggcaccggccggtcaccgtagtcgatcagcaccacttcatcagcgataccgcccat
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| CDS seq | atgggcggtatcgctgatgaagtggtgctgatcgactacggtgaccggccggtgcccgtcgatggcgacggcgtcgttcagatctcacggcgggtggttgtcgtcgacaaagatggagtgctcaagctcaatgcaagagcttggagaggcaactcagatggggttgatgttgctggagaagatgatgccgagttcaccgctcagagtgctagaacatcaggtgctatacttgatgttggctttgcgaagttattgaagccggcaatcggcacaaacaaacgagagatccatatggagaaccacccattcccaaaacgacgccgtctgatggcgccgccgccgcggtcagcttccgccgccgccgccgccggcggtggctttatccctgatgatatacttttctccgaaatcctcgtccgacttcccgcgaagtgccttgtgcgattccaatccgtgtgcaagctgtggcgcgccaccataatcagcaccagcttcgcgcgccgccacctggagcattccaggcccaggccatccatggtcgtcatgccacggatgtttctgagtaaccccaagaagtttaaacttcagggtgtcactttctacaggttccagccagggcagagcaaggttgccgagctcatcctagagaagagatttccccgtgggatcccaatgttcagcatgcctctgcactgcgacggcctcatcctgatcccttgcgtctcgggagagatcttcgtgtgcaacctgacgaccagcgagttcgttgagctgccgagaggaagccacagtgttgcactggagcacagggtcgccttcgggttcgacccttggagtggcaagtacaaggtggctaggcacttcctccgctcatcacacagcggaggagaatcccgggctggacatgagatcttgactcttggtgatggagaagattgttggaaatggaaggcgaccatagatccgccatatcctatcaatgctaggactccgatctgtctcccagggttcttctactggagcgctctccactccacgaccggccatggccttagcaaggtgagctcacatgttatccttcgatttagcttgcgcgatgaaacattcactgtccatcccaaccctccatgcaggggctttctgagcaacaacgacatgctatgccagcttggtggcaagttgtgctatgtccactccgcctcgccatgTGAGTTAGTGAGTTAG
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| Protein seq | MGGIADEVVLIDYGDRPVPVDGDGVVQISRRVVVVDKDGVLKLNARAWRGNSDGVDVAGEDDAEFTAQSARTSGAILDVGFAKLLKPAIGTNKREIHMENHPFPKRRRLMAPPPRSASAAAAAGGGFIPDDILFSEILVRLPAKCLVRFQSVCKLWRATIISTSFARRHLEHSRPRPSMVVMPRMFLSNPKKFKLQGVTFYRFQPGQSKVAELILEKRFPRGIPMFSMPLHCDGLILIPCVSGEIFVCNLTTSEFVELPRGSHSVALEHRVAFGFDPWSGKYKVARHFLRSSHSGGESRAGHEILTLGDGEDCWKWKATIDPPYPINARTPICLPGFFYWSALHSTTGHGLSKVSSHVILRFSLRDETFTVHPNPPCRGFLSNNDMLCQLGGKLCYVHSASPCELVS |
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| Function | F-box protein At3g57590 [UniProtKB/Swiss-Prot:Q9SVX4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0021960 | OsNaBo_08g0021960.01 | Chr08 | 27289553 | 27292754 | - | NAM | ||
| CDS seq | atgggcggtatcgctgatgaagtggtgctgatcgactacggtgaccggccggtgcccgtcgatggcgacggcgtcgttcagatctcacggcgggtggttgtcgtcgacaaagatggagtgctcaagctcaatgcaagagcttggagaggcaactcagatggggttgatgttgctggagaagatgatgccgagttcaccgctcagagtgctagaacatcaggtgctatacttgatgttggctttgcgaagttattgaagccggcaatcggcacaaacaaacgagagatccatatggagaaccacccattcccaaaacgacgccgtctgatggcgccgccgccgcggtcagcttccgccgccgccgccgccggcggtggctttatccctgatgatatacttttctccgaaatcctcgtccgacttcccgcgaagtgccttgtgcgattccaatccgtgtgcaagctgtggcgcgccaccataatcagcaccagcttcgcgcgccgccacctggagcattccaggcccaggccatccatggtcgtcatgccacggatgtttctgagtaaccccaagaagtttaaacttcagggtgtcactttctacaggttccagccagggcagagcaaggttgccgagctcatcctagagaagagatttccccgtgggatcccaatgttcagcatgcctctgcactgcgacggcctcatcctgatcccttgcgtctcgggagagatcttcgtgtgcaacctgacgaccagcgagttcgttgagctgccgagaggaagccacagtgttgcactggagcacagggtcgccttcgggttcgacccttggagtggcaagtacaaggtggctaggcacttcctccgctcatcacacagcggaggagaatcccgggctggacatgagatcttgactcttggtgatggagaagattgttggaaatggaaggcgaccatagatccgccatatcctatcaatgctaggactccgatctgtctcccagggttcttctactggagcgctctccactccacgaccggccatggccttagcaaggtgagctcacatgttatccttcgatttagcttgcgcgatgaaacattcactgtccatcccaaccctccatgcaggggctttctgagcaacaacgacatgctatgccagcttggtggcaagttgtgctatgtccactccgcctcgccatgTGAGTTAGTGAGTTAG
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| Protein seq | MGGIADEVVLIDYGDRPVPVDGDGVVQISRRVVVVDKDGVLKLNARAWRGNSDGVDVAGEDDAEFTAQSARTSGAILDVGFAKLLKPAIGTNKREIHMENHPFPKRRRLMAPPPRSASAAAAAGGGFIPDDILFSEILVRLPAKCLVRFQSVCKLWRATIISTSFARRHLEHSRPRPSMVVMPRMFLSNPKKFKLQGVTFYRFQPGQSKVAELILEKRFPRGIPMFSMPLHCDGLILIPCVSGEIFVCNLTTSEFVELPRGSHSVALEHRVAFGFDPWSGKYKVARHFLRSSHSGGESRAGHEILTLGDGEDCWKWKATIDPPYPINARTPICLPGFFYWSALHSTTGHGLSKVSSHVILRFSLRDETFTVHPNPPCRGFLSNNDMLCQLGGKLCYVHSASPCELVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0518300 | RBH | 0.0 | 0.0 | 0.457255 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40640 | RBH | 0.0 | 0.0 | 0.029648 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0518300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022290 | SBH | 0.153640 | 1.057604 | 0.636885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022180 | SBH | 0.0 | 0.714792 | 0.212058 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022070 | SBH | 0.610888 | 0.646780 | 0.946151 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014540 | SBH | 0.041680 | 0.121261 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022060 | SBH | 1.565557 | 3.180198 | 3.188009 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0410000 | RBH | 0.0029625 | 0.0048445 | 0.008262 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0431100 | RBH | 0 | 0 | 0.099567 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021620 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022270 | SBH | 0.061258 | 0.119006 | 0.222317 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
