Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_08g0005100 | OGI:08012040 | 2/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr08:4633597-4634297 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCAGATGGAACAAAGCAGCTGAATGGGAATCAAGCTATCCAAACCATGATTTTGAGTGGAAGCACATCGCTGAACCGGTCATGCAAGTTTACACCGAAACAACTGATGGGTCCTCCATAGAGCCAAAGGAAAGTGCTTTATTATGGCATTATCTGGATGCAGACCATGACTTTGGTTCCTGCCAAGCAAAGGAACTACTGGGTCATCTTGAAAGGGTGCTATCAAATGAACCTGTTGTTGTGAAGTGTGGTCATTACATTGTAGAAGTCAAACCACAGGTCTATACCATTTGAATTTATTACTACATTTTTTCACTTTCAACTCATTATGTCCAGCTCACACTAAATGAAATACATTACTTGTGCAGAGAGTTAGCAAGGGTCTTGTTATGGACAAGGTAATTCACAGATTGATGAACAATGGGAAGACGCTGGATTTCGTAGTGTGCATCGGTAACGATCGATCTGATGAGGACACGTTCAAAAGCATCGACAGCATGACCTCCAGCTCCGCATTCCCTGCAGTTCCAGAGGTCTTTGCCTGTTCAGTTGGTCAGAAACCCAGCAAAGCAAAGTACTATGTCAACAATGTTGGTGAAGTAGTAAGATTGCTCAAGAATGTAGCCGGCATTTCGTCGCACCGGGAGGCCGTCAGCCATGGACGTGTGATCTTCAGGGATGTGATGGATTATGTGGACTGA
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| CDS seq | ATGCAAGTTTACACCGAAACAACTGATGGGTCCTCCATAGAGCCAAAGGAAAGTGCTTTATTATGGCATTATCTGGATGCAGACCATGACTTTGGTTCCTGCCAAGCAAAGGAACTACTGGGTCATCTTGAAAGGGTGCTATCAAATGAACCTGTTGTTGTGAAGTGTGGTCATTACATTGTAGAAGTCAAACCACAGAGAGTTAGCAAGGGTCTTGTTATGGACAAGGTAATTCACAGATTGATGAACAATGGGAAGACGCTGGATTTCGTAGTGTGCATCGGTAACGATCGATCTGATGAGGACACGTTCAAAAGCATCGACAGCATGACCTCCAGCTCCGCATTCCCTGCAGTTCCAGAGGTCTTTGCCTGTTCAGTTGGTCAGAAACCCAGCAAAGCAAAGTACTATGTCAACAATGTTGGTGAAGTAGTAAGATTGCTCAAGAATGTAGCCGGCATTTCGTCGCACCGGGAGGCCGTCAGCCATGGACGTGTGATCTTCAGGGATGTGATGGATTATGTGGACTGA
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| Protein seq | MQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQRVSKGLVMDKVIHRLMNNGKTLDFVVCIGNDRSDEDTFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVNNVGEVVRLLKNVAGISSHREAVSHGRVIFRDVMDYVD |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [UniProtKB/Swiss-Prot:O80738] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_08g0005100 | OsIR64_08g0005100.01 | Chr08 | 4633597 | 4634297 | + | NAM | ||
| CDS seq | ATGCAAGTTTACACCGAAACAACTGATGGGTCCTCCATAGAGCCAAAGGAAAGTGCTTTATTATGGCATTATCTGGATGCAGACCATGACTTTGGTTCCTGCCAAGCAAAGGAACTACTGGGTCATCTTGAAAGGGTGCTATCAAATGAACCTGTTGTTGTGAAGTGTGGTCATTACATTGTAGAAGTCAAACCACAGAGAGTTAGCAAGGGTCTTGTTATGGACAAGGTAATTCACAGATTGATGAACAATGGGAAGACGCTGGATTTCGTAGTGTGCATCGGTAACGATCGATCTGATGAGGACACGTTCAAAAGCATCGACAGCATGACCTCCAGCTCCGCATTCCCTGCAGTTCCAGAGGTCTTTGCCTGTTCAGTTGGTCAGAAACCCAGCAAAGCAAAGTACTATGTCAACAATGTTGGTGAAGTAGTAAGATTGCTCAAGAATGTAGCCGGCATTTCGTCGCACCGGGAGGCCGTCAGCCATGGACGTGTGATCTTCAGGGATGTGATGGATTATGTGGACTGA
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| Protein seq | MQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQRVSKGLVMDKVIHRLMNNGKTLDFVVCIGNDRSDEDTFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVNNVGEVVRLLKNVAGISSHREAVSHGRVIFRDVMDYVD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0128900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03810 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0128900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001980 | SBH | 0.0 | 0.000000 | 1.901373 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015880 | SBH | 0.038942 | 3.586939 | 0.990241 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015810 | SBH | 1.466581 | 21.428936 | 4.893864 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014310 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015940 | SBH | 0.636095 | 11.461215 | 8.156175 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0070900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0020940 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0401200 | SBH | 1.013017 | 2.000736 | 0.1181385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015330 | SBH | 0.0 | 0.343182 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015560 | SBH | 0.053132 | 3.311518 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015400 | SBH | 0.000000 | 7.138194 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0020740 | SBH | 0.0 | 0.0 | 1.948722 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015550 | SBH | 0.287339 | 17.052975 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015710 | SBH | 0.210320 | 2.569801 | 1.266191 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015810 | SBH | 0.976097 | 91.950645 | 2.372233 |
