Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0015810 | OGI:08058410 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:19944192-19949941 | ||||||||
| Gene Symbol | TPS7, OsTPS7 | ||||||||||
| DNA seq | gagcaaataagagttagaaggtttccatgatggcataatgcaactttctccaagatataatttccaaaagcccaacacaatcatcaatgtgaagtaggagattggattcagtcattcaagtaaacactggcaactggtaataactggcaagtgaaacaagtcgatggctattcaaagccagggggcttttctttcacagtgcagttctccagcaagaacctcctcaactatcaaaattgcctacatatgagtatacatcacctaaactaaaaatgctgagcttccgcttgcactcctgtagttgtcctaatggtggtgatgattcatgcttttggccaaatctagatgaagacattggaatgtacacaagtttggatgttacaaagattaggtggttcagtccacataatccatcacatccctgaaggtcacacgtccatggctgacggcctcccggtgtgacgaaatgccggctacattcttgagcaatcttactacttcaccaacatcgtcgacatagtactttgccttgctgggtttctgaccaactgaacaggcaaagacttctggaactgcagggaatgcggagctggaggtcatgctgtcgatgcttttgaacatgtcctcatcagattgatcattaccgatgcacactacgaaatccggcgtcttcccgttgttcatcaatctgtgaattaccttgtccacaacaagacccttgctaactccctgcacaagtaatgtatttcagttagtgcgagctggacataatgagttgaaagtgacaaaatgttgtaataaattcaaatggtataaacctgtggtttgacttcaacaatgtaatgaccacacttcacaacaacaggttcatttgatagcaccctttcaagatgacccagtagttcctttgcttggcaggaaccgaagtcatggtctgcatccaaataatgccatactagagcactttcctttggctctatggaggacccatcagttgtttcggtgtaaacttgcatgaccggttcagcgatgtgcttccactcaaaatcatggtttggatagcttgattcccattcagctgctttgttccatctgagaaaacataaacagttcatcatactcctgaataattgaactgtacaattgcataatagtgtggagaaaatgcaaataaaaacagatttaagaagaaaaaaaaaggtactcaaaatgtttacctgacaaaatagccatgttctgctgcaataccaagcttctgacatggagcaaaccactcatcaagcaaactacgcgctcttccactgactatgaatacatcattcttcgggtcatcacacaagctgttgagaatagtaataagttcatcgcttggagctttattgattgatgactggggtacaagagtgccatcatagtcaagaaatattgcccttctggtagccttgttgtaagaagaagcaaagtgttccaaagagagctttctaaagccaggagaaagagcaataactctgaagttcagaccaaaaccaatagcccagcaccttcggctgtagtgatctttgcatgccctttccagatcttgagcaaagctatgagcccagtaagcaacactatgagatctaacataacggtagtgcttttcatgccgtagccttttctcggattcagtcaagtctgttgcatggtgtaaggcatcagccacatcgtcaacactccaaggatttaccctgaaagcaccactaagagatggtgagcaaccaacaaactcagacacaattagtgtgcttgtgtgatggcaatttgtgtcactgcctctggcattatctatctcctcatttccctgccggcaaacagtgtactcatatggtaccaagttcataccatccctcacagcatttacaatacaacaatcagatgcagcatagaatgcaatcttttcataaaatggtatgctatgatcaataaggacaacaggcttgtaatctacagagccatacttaaggttgattctttcagctacagagacagattctgttattgcttcctccacgtctttccctgtgcttcttgctggattgacaatctgtacaaggacaaccttccctctgagtttcgggttcctatctagaagtagctccaacccaagcagttttagactgattcctttgaagatgtccatgtcatctacacctaacatgagcatcttgcctttatacctttgttcaatttcttgaaccttctttactgtagcatgcaactttaggatggactcaagacggccaacatggacacccactgagaggatcttcaggctcactgttcttccaaagtaatctattccaatgtaaccgcgctttgattcataatgcagacccaataatctgctgcaacaagaaaggaagtggcgggcatagtcaaatgtttggaaaccaataagatcagcattaagcaatgacttcaggatctcatcccttacaggcagtgacctgtagatttctgaggagggaaatggactgtggagaaaaaatcctagctttattcggtgtaacctcttcctcagaaatgttgggagaagcatgaggtgataatcatgaacccagacatgatcatcatccgtattaatagcttccataactttgtcggcaaagagtttgttagctcggacataggcttgaaacagggagcgatcaaagagctcacctttgtcaagacaaatgggaagcatatagtggaaaagtggccacaattgctgtttacagaagccatgatagaactgctgctggaggtcaggagggagaaaagtaggtatgcatcggtaatctctaagaagcttctgtgcaacttgatcctgctcactgggatctacctgaaccttcaaactacccacataaatgacatcagtctcatttgaaaaaccatctttaagttgcatgagcagtgcatcatcatcccttgagaaggaccattgcccagcttcatcttttgtacaattcagtggaaggaagttggcaacaattattttcctctcaacagaagatgctgaaccaactgaatcgccatcaattctagtgtcccaatcaggatcagatataatgccaggagaggttaccacacgaggaagagatttaaaaggttgccgaaagtcaactccatctccacaactcatttcgaacagatttgaataagattttgaaaccatggtcccacaaccttctgtgttgaaaccaaaatagtgacaaaccaattcgtttaagcccttacgtcaaaatagcaagcaccaccgtttgaattcctgtgaaatagaaaaacatattatgtcagctattccttataaaagctactataatatataataatatctcatttagttaaattaactaatttgcatctagtgtaatacattcaccacaaacacaaacaatccgggttatacaacataaaatattattgatgtgtagccaactgatattgtgccattgtggtttcatgttagtatgtttttgcaaacgtaagaaatatcttgttcacagtttacgaaacatatttttcacatcagacgcaatgactaaagtcactgaactgactgattacatacattcttgcattagaactctaaaacaaccaaatatggatggacatcaaacgacacggaacaagtttgctattgtcaagaaatgaaaaaaaggctccacacacaatagtacaagaaggtcatatgtactcatttcatttgatatccattggctgaactcttgcattagcaaggtacaactttttggtgcacacaaaaatgttaggcacgcaccgcaagtgcggcacttcaaaatatcctcactacggacgctatcctaccaactaagagattttgacaccagtctagtggatcccatccttttgataagaaaaataatgccacgtttatctccaacttaaggaccacaatatccattgacgaaaactaatcaaaacatggaccacgcacccccaccacatacaaacatagaaataggagctctaggaccaccaccacactccaccagcgtgattcaaccaccctccaatccagaatttttcccccattctcagcaagcacaatagcttgcaaccctcatgccacagttgcttgcaatcctatccatcccaatccagaggaggctccaagtgtcattatgacaatcaaaccagtttaacacgcaaattacattattacaaagcctattatttggcaagagctggctggcctacagaagatactagtactagttacaggagatggcaagcagccaagcaagactagtgaaaactggatccaccactaccacctatccaactcatccaagctgccaaaactccagtggcagcattgtgttaaatgcaactagggacagtataaatctgtgcagtacgtatagaaaaacattctgctttgcatgaagtatcaaaaaattacaacatggctactgcacaaaatcactaatataacattgttcatttcaataatgaaatgggacagcgctgctctctttctctaaataaataaataaatactactaatcactaatatttggcatggacatcacacatcaggttggatcaaaccctacaaaaaagagggttttctaatcaaaaccaaacagatcagttttgcctccctagcacgtcataaaaaaaatagatattgacggataagaattgacggacaaaaatagatcagtttgccatctctcctaatgtctagaggctaggaatgaagagtaaacaatacaaatgtgtgcaactggtaaaaatatgctcgtacttgacaggaatatgccagaacaagatttgaatccaactggtggttgatttctaggttgaacggtgatgttcgaaaacaaacaaaagttggtatagcgtataaacactcgcatcctaaagtaacacacgttagatttctcactgaggataagtacaaatagcaatggaacagcagaaaactgtggcttttcactatcgctgtcaatccacggacacacacaaaaaaagaaaaaagaacaaatcggccgcaatgtttatacggaaatgcagcaaattacgaaccaaaacatactcaaaaagcaagtactgaaaatagaatgacaggtggattatggataggataagccctgctaaagatatactactccaaaagcagcattaatttctttttgcaaaaaaaaaaatccccctttttacatcaaacttcctctgaaatactaactgaaaacaaatcaaattcccttcaaagctcaaagcaatgaagaacccaactgaagagatcgccgaaacttcacatctctaaaggaaaaggaaagaaaaaaaaaagatcgccgcctaaacgcaagcaacagcaagaaacgaaacgtccccccataatccctcccaagatcgagcctttccagcccaagaacaaacagcattcattcgattcgaaggtaaacgaacccatcaagaaacggaggcgcagaagaacagagcaaagaacagaaaagaaaagaaaaaacggcgcccctcactcacccacagatcaaaagcgggagccgacgctcctcgctttctacggaatttctccctctggagctcctcgcttcgcctgtttcctcctccttttcgcggatgtaacgcggcaaaccaaagccgagagagagagagagagagagagagagagagagagagaatgagagagagatggagacggcggccaagaacgcgagagattgattagtgaaggg
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| CDS seq | atggtttcaaaatcttattcaaatctgttcgaaatgagttgtggagatggagttgactttcggcaaccttttaaatctcttcctcgtgtggtaacctctcctggcattatatctgatcctgattgggacactagaattgatggcgattcagttggttcagcatcttctgttgagaggaaaataattgttgccaacttccttccactgaattgtacaaaagatgaagctgggcaatggtccttctcaagggatgatgatgcactgctcatgcaacttaaagatggtttttcaaatgagactgatgtcatttatgtgggtagtttgaaggttcaggtagatcccagtgagcaggatcaagttgcacagaagcttcttagagattaccgatgcatacctacttttctccctcctgacctccagcagcagttctatcatggcttctgtaaacagcaattgtggccacttttccactatatgcttcccatttgtcttgacaaaggtgagctctttgatcgctccctgtttcaagcctatgtccgagctaacaaactctttgccgacaaagttatggaagctattaatacggatgatgatcatgtctgggttcatgattatcacctcatgcttctcccaacatttctgaggaagaggttacaccgaataaagctaggattttttctccacagtccatttccctcctcagaaatctacaggtcactgcctgtaagggatgagatcctgaagtcattgcttaatgctgatcttattggtttccaaacatttgactatgcccgccacttcctttcttgttgcagcagattattgggtctgcattatgaatcaaagcgcggttacattggaatagattactttggaagaacagtgagcctgaagatcctctcagtgggtgtccatgttggccgtcttgagtccatcctaaagttgcatgctacagtaaagaaggttcaagaaattgaacaaaggtataaaggcaagatgctcatgttaggtgtagatgacatggacatcttcaaaggaatcagtctaaaactgcttgggttggagctacttctagataggaacccgaaactcagagggaaggttgtccttgtacagattgtcaatccagcaagaagcacagggaaagacgtggaggaagcaataacagaatctgtctctgtagctgaaagaatcaaccttaagtatggctctgtagattacaagcctgttgtccttattgatcatagcataccattttatgaaaagattgcattctatgctgcatctgattgttgtattgtaaatgctgtgagggatggtatgaacttggtaccatatgagtacactgtttgccggcagggaaatgaggagatagataatgccagaggcagtgacacaaattgccatcacacaagcacactaattgtgtctgagtttgttggttgctcaccatctcttagtggtgctttcagggtaaatccttggagtgttgacgatgtggctgatgccttacaccatgcaacagacttgactgaatccgagaaaaggctacggcatgaaaagcactaccgttatgttagatctcatagtgttgcttactgggctcatagctttgctcaagatctggaaagggcatgcaaagatcactacagccgaaggtgctgggctattggttttggtctgaacttcagagttattgctctttctcctggctttagaaagctctctttggaacactttgcttcttcttacaacaaggctaccagaagggcaatatttcttgactatgatggcactcttgtaccccagtcatcaatcaataaagctccaagcgatgaacttattactattctcaacagcttgtgtgatgacccgaagaatgatgtattcatagtcagtggaagagcgcgtagtttgcttgatgagtggtttgctccatgtcagaagcttggtattgcagcagaacatggctattttgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctagtatggcattatttggatgcagaccatgacttcggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgttgaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgccggatttcgtagtgtgcatcggtaatgatcaatctgatgaggacatgttcaaaagcatcgacagcatgacctccagctccgcattccctgcagttccagaagtctttgcctgttcagttggtcagaaacccagcaaggcaaagtactatgtcgacgatgttggtgaagtagtaagattgctcaagaatgtagccggcatttcgtcacaccgggaggccgtcagccatggacgtgtgaccttcagggatgtgatggattatgtggactga
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| Protein seq | MVSKSYSNLFEMSCGDGVDFRQPFKSLPRVVTSPGIISDPDWDTRIDGDSVGSASSVERKIIVANFLPLNCTKDEAGQWSFSRDDDALLMQLKDGFSNETDVIYVGSLKVQVDPSEQDQVAQKLLRDYRCIPTFLPPDLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKLFADKVMEAINTDDDHVWVHDYHLMLLPTFLRKRLHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLIGFQTFDYARHFLSCCSRLLGLHYESKRGYIGIDYFGRTVSLKILSVGVHVGRLESILKLHATVKKVQEIEQRYKGKMLMLGVDDMDIFKGISLKLLGLELLLDRNPKLRGKVVLVQIVNPARSTGKDVEEAITESVSVAERINLKYGSVDYKPVVLIDHSIPFYEKIAFYAASDCCIVNAVRDGMNLVPYEYTVCRQGNEEIDNARGSDTNCHHTSTLIVSEFVGCSPSLSGAFRVNPWSVDDVADALHHATDLTESEKRLRHEKHYRYVRSHSVAYWAHSFAQDLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLSLEHFASSYNKATRRAIFLDYDGTLVPQSSINKAPSDELITILNSLCDDPKNDVFIVSGRARSLLDEWFAPCQKLGIAAEHGYFVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYTETTDGSSIEPKESALVWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTPDFVVCIGNDQSDEDMFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVDDVGEVVRLLKNVAGISSHREAVSHGRVTFRDVMDYVD |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [UniProtKB/Swiss-Prot:O80738] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0015810 | OsCMeo_08g0015810.01 | Chr08 | 19944192 | 19949941 | - | NAM | ||
| CDS seq | atggtttcaaaatcttattcaaatctgttcgaaatgagttgtggagatggagttgactttcggcaaccttttaaatctcttcctcgtgtggtaacctctcctggcattatatctgatcctgattgggacactagaattgatggcgattcagttggttcagcatcttctgttgagaggaaaataattgttgccaacttccttccactgaattgtacaaaagatgaagctgggcaatggtccttctcaagggatgatgatgcactgctcatgcaacttaaagatggtttttcaaatgagactgatgtcatttatgtgggtagtttgaaggttcaggtagatcccagtgagcaggatcaagttgcacagaagcttcttagagattaccgatgcatacctacttttctccctcctgacctccagcagcagttctatcatggcttctgtaaacagcaattgtggccacttttccactatatgcttcccatttgtcttgacaaaggtgagctctttgatcgctccctgtttcaagcctatgtccgagctaacaaactctttgccgacaaagttatggaagctattaatacggatgatgatcatgtctgggttcatgattatcacctcatgcttctcccaacatttctgaggaagaggttacaccgaataaagctaggattttttctccacagtccatttccctcctcagaaatctacaggtcactgcctgtaagggatgagatcctgaagtcattgcttaatgctgatcttattggtttccaaacatttgactatgcccgccacttcctttcttgttgcagcagattattgggtctgcattatgaatcaaagcgcggttacattggaatagattactttggaagaacagtgagcctgaagatcctctcagtgggtgtccatgttggccgtcttgagtccatcctaaagttgcatgctacagtaaagaaggttcaagaaattgaacaaaggtataaaggcaagatgctcatgttaggtgtagatgacatggacatcttcaaaggaatcagtctaaaactgcttgggttggagctacttctagataggaacccgaaactcagagggaaggttgtccttgtacagattgtcaatccagcaagaagcacagggaaagacgtggaggaagcaataacagaatctgtctctgtagctgaaagaatcaaccttaagtatggctctgtagattacaagcctgttgtccttattgatcatagcataccattttatgaaaagattgcattctatgctgcatctgattgttgtattgtaaatgctgtgagggatggtatgaacttggtaccatatgagtacactgtttgccggcagggaaatgaggagatagataatgccagaggcagtgacacaaattgccatcacacaagcacactaattgtgtctgagtttgttggttgctcaccatctcttagtggtgctttcagggtaaatccttggagtgttgacgatgtggctgatgccttacaccatgcaacagacttgactgaatccgagaaaaggctacggcatgaaaagcactaccgttatgttagatctcatagtgttgcttactgggctcatagctttgctcaagatctggaaagggcatgcaaagatcactacagccgaaggtgctgggctattggttttggtctgaacttcagagttattgctctttctcctggctttagaaagctctctttggaacactttgcttcttcttacaacaaggctaccagaagggcaatatttcttgactatgatggcactcttgtaccccagtcatcaatcaataaagctccaagcgatgaacttattactattctcaacagcttgtgtgatgacccgaagaatgatgtattcatagtcagtggaagagcgcgtagtttgcttgatgagtggtttgctccatgtcagaagcttggtattgcagcagaacatggctattttgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctagtatggcattatttggatgcagaccatgacttcggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgttgaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgccggatttcgtagtgtgcatcggtaatgatcaatctgatgaggacatgttcaaaagcatcgacagcatgacctccagctccgcattccctgcagttccagaagtctttgcctgttcagttggtcagaaacccagcaaggcaaagtactatgtcgacgatgttggtgaagtagtaagattgctcaagaatgtagccggcatttcgtcacaccgggaggccgtcagccatggacgtgtgaccttcagggatgtgatggattatgtggactga
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| Protein seq | MVSKSYSNLFEMSCGDGVDFRQPFKSLPRVVTSPGIISDPDWDTRIDGDSVGSASSVERKIIVANFLPLNCTKDEAGQWSFSRDDDALLMQLKDGFSNETDVIYVGSLKVQVDPSEQDQVAQKLLRDYRCIPTFLPPDLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKLFADKVMEAINTDDDHVWVHDYHLMLLPTFLRKRLHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLIGFQTFDYARHFLSCCSRLLGLHYESKRGYIGIDYFGRTVSLKILSVGVHVGRLESILKLHATVKKVQEIEQRYKGKMLMLGVDDMDIFKGISLKLLGLELLLDRNPKLRGKVVLVQIVNPARSTGKDVEEAITESVSVAERINLKYGSVDYKPVVLIDHSIPFYEKIAFYAASDCCIVNAVRDGMNLVPYEYTVCRQGNEEIDNARGSDTNCHHTSTLIVSEFVGCSPSLSGAFRVNPWSVDDVADALHHATDLTESEKRLRHEKHYRYVRSHSVAYWAHSFAQDLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLSLEHFASSYNKATRRAIFLDYDGTLVPQSSINKAPSDELITILNSLCDDPKNDVFIVSGRARSLLDEWFAPCQKLGIAAEHGYFVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYTETTDGSSIEPKESALVWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTPDFVVCIGNDQSDEDMFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVDDVGEVVRLLKNVAGISSHREAVSHGRVTFRDVMDYVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.466581 | 21.428936 | 4.893864 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0414700 | RBH | 0.0 | 0.0 | 0.839984 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31980 | RBH | 0.0 | 0.0 | 0.209391 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0414700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015990 | RBH | 0.919749 | 36.643394 | 2.285310 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015880 | RBH | 0.038942 | 3.586939 | 0.990241 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008490 | RBH | 1.525671 | 67.701050 | 10.497167 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016150 | RBH | 0.141438 | 0.287968 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015940 | RBH | 0.636095 | 11.461215 | 8.156175 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0316700 | RBH | 3.385352 | 54.9837305 | 10.937806 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015890 | RBH | 0.158438 | 1.802052 | 0.824507 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0337600 | RBH | 9.021751 | 87.63982 | 16.2923215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015330 | RBH | 0.0 | 0.343182 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015560 | RBH | 0.053132 | 3.311518 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015400 | RBH | 0.000000 | 7.138194 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016170 | RBH | 0.000000 | 1.443860 | 0.568183 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015550 | RBH | 0.287339 | 17.052975 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015710 | RBH | 0.210320 | 2.569801 | 1.266191 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015810 | RBH | 0.976097 | 91.950645 | 2.372233 |
