Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_06g0027410 | OGI:06082540 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr06:30489760-30491459 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTTGTGCTTTTCTTGCAAATGCCACCGCCGCCGCCGCCGCCGCCGCCATGACCGATGAGCGCCACCGCCGCCGCAGCCTTGCGCACCGGCGCGGCCATCCTCGCCGCGCTCTCCGACGTGTCCGCCTGCCAAATCCACGCGCGAGCGCTGAAGCTCGGCGTGCTCCCCTCGTCTCTCCACCTTTGCTCCGCTCTGGTCAAGTCCTACGCGGCCTCCGGCAGCCTCGCCGCCGCGCGCAAGCTGTTCGACGAAATCCCCCGCCCGGACGTCCCGCTATGGAACACCCTGTTGTCTGCCTGTGCGCGTTCTGGGCTCCCCCAACACGCGTTGGTGACGGCGTCCACCATGGCGCGGGCGGGTTCTTCCCGGCCCAACAACGTCTCCGTCACGATCCTCTTGTCAGCGTGCGCGCGGCTGAGGAGCTTGGTGCATGGGAGAGAGATCCATGGCTACGCGGTGAGAAATCTCGCTGCTCTTGATTTGCCCTTGCTGAATGCTTTGGTCAGCATGTACGGGAGATGCGGCCGGCTGGTGAATGCGAGAATGGTGTTCGACAGCATAGGGAGTATGAAGAGCGTGGTTTCTTGGACTTGCATGATCAATGCTTGCTGCGAGAATGGAAAGCCAGCAGAGGCACTGCAAGTGTTCGAGCAAATGAGGCTTGCTGGGGTCAAGGTTGACGAGGTAACCCTTCTTGCAGTCATCTCAGCGTGCACAATGTTGGACTGCAGGTCAGAGCTGGGGGAGTGGGTGGAGGAGTATGCCCATGAAAATGGGTTCTTGGAGAATACCCGTGTCGCCAACGCACTCATACATATGCATGGTAAGATGGGGAGGGTAAGGAGATCATGTGAGATATTTGACTCGATCACTGTAAGGACAGTGGTCTCATGGACAGCCATAATTCAGGCCCTCGCCGTGCACGGGCATGGGGTGGCTGCGCTTGTCCGGTTTTCGCAGATGCTCAGACAAGGTTTCCAGCCTGATGAACTTGTATTCTTGAGCGTGATCAATGCCTGCGGTCACTCGGGGCTCGTCAATGAAGCGCGCCAATTGTTCAAGTCTATGGTTGAAGAGTATCACATCACACCTTGGATGGAGCACTATGGGAGCATGGTGGACCTGCTGTGCAAATCTGGTATGCTGGAAGAGGCATTTGAGTTCGTCCTGGCTATGCCAGTGAGGCCTGACCCTGTAATATGGCGTGTATTGACCGGAGCATGTCGGGATCTAGGAAATGCCATTCTCGCGAGGAAGGTGGTCGATCATGTGATCGAAATGGAGCCTGAATACGGGGGGAATTATGTGCTAGCGTCAAACTTGTATGCTGCCAATGAGGATTGGCGACGTGTTGTGGATGTAAGGATGGAGATGGGTGTGTGGAAAGAGACTTCAAGGTACAGTACTGCTCTGTCCTATGTTGAAGTCAATGTTGAAGAAAATGCTGAAAGCTTGCATCCTCCTACAAATGATGCATATAGATGAAAAATGATTGTTTTCAGCAAATTATGGTCGGTCACACTTCAATTTTTAGGGACCATATATCCAATTTTGTACCTCAGGAGTCTCAAGGTGGTAAATTTGAATTTCTTCCTTTATTTCGTTTGATGAATTTGGGAACAAAATTTCATCAAACAACTTCATTGTTGGACATGCTGACCAAATCAGGTCATAATTGCATACATATATTTATTCCC
More
|
||||||||||
| CDS seq | ATGAGCGCCACCGCCGCCGCAGCCTTGCGCACCGGCGCGGCCATCCTCGCCGCGCTCTCCGACGTGTCCGCCTGCCAAATCCACGCGCGAGCGCTGAAGCTCGGCGTGCTCCCCTCGTCTCTCCACCTTTGCTCCGCTCTGGTCAAGTCCTACGCGGCCTCCGGCAGCCTCGCCGCCGCGCGCAAGCTGTTCGACGAAATCCCCCGCCCGGACGTCCCGCTATGGAACACCCTGTTGTCTGCCTGTGCGCGTTCTGGGCTCCCCCAACACGCGTTGGTGACGGCGTCCACCATGGCGCGGGCGGGTTCTTCCCGGCCCAACAACGTCTCCGTCACGATCCTCTTGTCAGCGTGCGCGCGGCTGAGGAGCTTGGTGCATGGGAGAGAGATCCATGGCTACGCGGTGAGAAATCTCGCTGCTCTTGATTTGCCCTTGCTGAATGCTTTGGTCAGCATGTACGGGAGATGCGGCCGGCTGGTGAATGCGAGAATGGTGTTCGACAGCATAGGGAGTATGAAGAGCGTGGTTTCTTGGACTTGCATGATCAATGCTTGCTGCGAGAATGGAAAGCCAGCAGAGGCACTGCAAGTGTTCGAGCAAATGAGGCTTGCTGGGGTCAAGGTTGACGAGGTAACCCTTCTTGCAGTCATCTCAGCGTGCACAATGTTGGACTGCAGGTCAGAGCTGGGGGAGTGGGTGGAGGAGTATGCCCATGAAAATGGGTTCTTGGAGAATACCCGTGTCGCCAACGCACTCATACATATGCATGGTAAGATGGGGAGGGTAAGGAGATCATGTGAGATATTTGACTCGATCACTGTAAGGACAGTGGTCTCATGGACAGCCATAATTCAGGCCCTCGCCGTGCACGGGCATGGGGTGGCTGCGCTTGTCCGGTTTTCGCAGATGCTCAGACAAGGTTTCCAGCCTGATGAACTTGTATTCTTGAGCGTGATCAATGCCTGCGGTCACTCGGGGCTCGTCAATGAAGCGCGCCAATTGTTCAAGTCTATGGTTGAAGAGTATCACATCACACCTTGGATGGAGCACTATGGGAGCATGGTGGACCTGCTGTGCAAATCTGGTATGCTGGAAGAGGCATTTGAGTTCGTCCTGGCTATGCCAGTGAGGCCTGACCCTGTAATATGGCGTGTATTGACCGGAGCATGTCGGGATCTAGGAAATGCCATTCTCGCGAGGAAGGTGGTCGATCATGTGATCGAAATGGAGCCTGAATACGGGGGGAATTATGTGCTAGCGTCAAACTTGTATGCTGCCAATGAGGATTGGCGACGTGTTGTGGATGTAAGGATGGAGATGGGTGTGTGGAAAGAGACTTCAAGGTACAGTACTGCTCTGTCCTATGTTGAAGTCAATGTTGAAGAAAATGCTGAAAGCTTGCATCCTCCTACAAATGATGCATATAGATGA
More
|
||||||||||
| Protein seq | MSATAAAALRTGAAILAALSDVSACQIHARALKLGVLPSSLHLCSALVKSYAASGSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVTASTMARAGSSRPNNVSVTILLSACARLRSLVHGREIHGYAVRNLAALDLPLLNALVSMYGRCGRLVNARMVFDSIGSMKSVVSWTCMINACCENGKPAEALQVFEQMRLAGVKVDEVTLLAVISACTMLDCRSELGEWVEEYAHENGFLENTRVANALIHMHGKMGRVRRSCEIFDSITVRTVVSWTAIIQALAVHGHGVAALVRFSQMLRQGFQPDELVFLSVINACGHSGLVNEARQLFKSMVEEYHITPWMEHYGSMVDLLCKSGMLEEAFEFVLAMPVRPDPVIWRVLTGACRDLGNAILARKVVDHVIEMEPEYGGNYVLASNLYAANEDWRRVVDVRMEMGVWKETSRYSTALSYVEVNVEENAESLHPPTNDAYR |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At4g14820 [UniProtKB/Swiss-Prot:O23337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0027410 | OsIR64_06g0027410.01 | Chr06 | 30489760 | 30491459 | + | NAM | ||
| CDS seq | ATGAGCGCCACCGCCGCCGCAGCCTTGCGCACCGGCGCGGCCATCCTCGCCGCGCTCTCCGACGTGTCCGCCTGCCAAATCCACGCGCGAGCGCTGAAGCTCGGCGTGCTCCCCTCGTCTCTCCACCTTTGCTCCGCTCTGGTCAAGTCCTACGCGGCCTCCGGCAGCCTCGCCGCCGCGCGCAAGCTGTTCGACGAAATCCCCCGCCCGGACGTCCCGCTATGGAACACCCTGTTGTCTGCCTGTGCGCGTTCTGGGCTCCCCCAACACGCGTTGGTGACGGCGTCCACCATGGCGCGGGCGGGTTCTTCCCGGCCCAACAACGTCTCCGTCACGATCCTCTTGTCAGCGTGCGCGCGGCTGAGGAGCTTGGTGCATGGGAGAGAGATCCATGGCTACGCGGTGAGAAATCTCGCTGCTCTTGATTTGCCCTTGCTGAATGCTTTGGTCAGCATGTACGGGAGATGCGGCCGGCTGGTGAATGCGAGAATGGTGTTCGACAGCATAGGGAGTATGAAGAGCGTGGTTTCTTGGACTTGCATGATCAATGCTTGCTGCGAGAATGGAAAGCCAGCAGAGGCACTGCAAGTGTTCGAGCAAATGAGGCTTGCTGGGGTCAAGGTTGACGAGGTAACCCTTCTTGCAGTCATCTCAGCGTGCACAATGTTGGACTGCAGGTCAGAGCTGGGGGAGTGGGTGGAGGAGTATGCCCATGAAAATGGGTTCTTGGAGAATACCCGTGTCGCCAACGCACTCATACATATGCATGGTAAGATGGGGAGGGTAAGGAGATCATGTGAGATATTTGACTCGATCACTGTAAGGACAGTGGTCTCATGGACAGCCATAATTCAGGCCCTCGCCGTGCACGGGCATGGGGTGGCTGCGCTTGTCCGGTTTTCGCAGATGCTCAGACAAGGTTTCCAGCCTGATGAACTTGTATTCTTGAGCGTGATCAATGCCTGCGGTCACTCGGGGCTCGTCAATGAAGCGCGCCAATTGTTCAAGTCTATGGTTGAAGAGTATCACATCACACCTTGGATGGAGCACTATGGGAGCATGGTGGACCTGCTGTGCAAATCTGGTATGCTGGAAGAGGCATTTGAGTTCGTCCTGGCTATGCCAGTGAGGCCTGACCCTGTAATATGGCGTGTATTGACCGGAGCATGTCGGGATCTAGGAAATGCCATTCTCGCGAGGAAGGTGGTCGATCATGTGATCGAAATGGAGCCTGAATACGGGGGGAATTATGTGCTAGCGTCAAACTTGTATGCTGCCAATGAGGATTGGCGACGTGTTGTGGATGTAAGGATGGAGATGGGTGTGTGGAAAGAGACTTCAAGGTACAGTACTGCTCTGTCCTATGTTGAAGTCAATGTTGAAGAAAATGCTGAAAGCTTGCATCCTCCTACAAATGATGCATATAGATGA
More
|
|||||||
| Protein seq | MSATAAAALRTGAAILAALSDVSACQIHARALKLGVLPSSLHLCSALVKSYAASGSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVTASTMARAGSSRPNNVSVTILLSACARLRSLVHGREIHGYAVRNLAALDLPLLNALVSMYGRCGRLVNARMVFDSIGSMKSVVSWTCMINACCENGKPAEALQVFEQMRLAGVKVDEVTLLAVISACTMLDCRSELGEWVEEYAHENGFLENTRVANALIHMHGKMGRVRRSCEIFDSITVRTVVSWTAIIQALAVHGHGVAALVRFSQMLRQGFQPDELVFLSVINACGHSGLVNEARQLFKSMVEEYHITPWMEHYGSMVDLLCKSGMLEEAFEFVLAMPVRPDPVIWRVLTGACRDLGNAILARKVVDHVIEMEPEYGGNYVLASNLYAANEDWRRVVDVRMEMGVWKETSRYSTALSYVEVNVEENAESLHPPTNDAYR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.047176 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0700100 | RBH | 0.051450 | 0.0 | 0.453309 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48660 | RBH | 0.037209 | 0.0 | 0.116424 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0700100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028000 | RBH | 0.0 | 0.0 | 0.375050 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027820 | RBH | 0.0 | 0.630498 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027950 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028020 | RBH | 0.615786 | 2.031232 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0462900 | RBH | 0.1545365 | 0.471809 | 0.135327 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003880 | SBH | 0.021490 | 0.054893 | 0.126535 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0446500 | RBH | 0.1003935 | 0.235793 | 0.804078 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027580 | RBH | 0.0 | 3.714262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027860 | RBH | 0.068991 | 0.815687 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027830 | RBH | 0.0 | 0.0 | 0.0 |
