Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0027950 | OGI:06082540 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:29201266-29202956 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcttgtgcttttcttgcaaatgccaccgccgccgccgccatgaccgatgagcgccaccgccgccgcagccttgcgcaccggcgcggccatcctcgccgcgctctccgacgtgtccgcctgccaaatccacgcgcgagcgctgaagctcggcgtgctcccctcgtctctccacctttgctccgctctggtcaagtcctacgcggcctccggcagcctcgccgccgcgcgcaagctgttcgacgaaatcccccgcccggacgtcccgctatggaacaccctgttgtctgcctgtgcgcgttctgggctcccccaacacgcgttggtgacggcgtccaccatggcgcgggcgggttcttcccggcccgacaacgtctccgtcacgatcctcttgtcagcgtgcgcgcggctgaggagcttggtgcatgggagagagatccatggctacgcggtgagaaatctcgctgctcttgatttgcccttgctgaatgctttggtcagcatgtacgggagatgcggccggctggtgaatgcgagaatggtgttcgacagcatagggagtatgaagagcgtggtttcttggacttgcatgatcaatgcttgctgcgagaatggaaagccagcagaggcactgcaagtgttcgagcaaatgaggcttgctggggtcaaggttgacgaggtaacccttcttgcagtcatctcagcgtgcacaatgttggactgcaggtcagagctgggggagtgggtggaggagtatgcccatgaaaatgggttcttggagaatacccgtgtcgccaacgcactcatacatatgcatggtaagatggggagggtaaggagatcatgtgagatatttgactcgatcactgtaaggacagtggtctcatggacagccataattcaggccctcgccgtgcacgggcatggggtggctgcgcttgtccagttttcgcagatgctcagacaaggtttccagcctgatgaacttgtattcttgagcgtgatcaatgcctgcagtcactcggggctcgtcaatgaagcgcgccaattgttcaagtctatggttgaagagtatcacatcacaccttggatggagcactatgggagcatggtggacctgctgtgcaaatctggtatgctggaagaggcatttgagttcgtcctggctatgccagtgaggcctgaccctgtaatatggcgtgtattgaccggagcatgtcgggatctaggaaatgccattctcgcgaggaaggtggtcgatcatgtgatcgaaatggagcctgaatacGgggggaattatgtgctagcgtcaaacttgtatgctgccaatgaggattggcgacgtgttgtggatgtaaggatggagatgggtgtgtggaaagagacttcaaggtacagtactgctctgtcctatgttgaagtcaatgttgaagaaaatgctgaaagcttgcatcctcctacaaatgatgcatatagatgaaaaatgattgttttcagcaagttatggtcggtcacacttcaatttttagggaccatatatccaattttgtacctcaggagtctcaaggtggtaaatttgaatttcttcctttatttcgtttgatgaatttgggaacaaaatttcatcaaacaacttcattgttggacatgctgaccaaatcaggtcataattgcatacatatatttattccc
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| CDS seq | atgagcgccaccgccgccgcagccttgcgcaccggcgcggccatcctcgccgcgctctccgacgtgtccgcctgccaaatccacgcgcgagcgctgaagctcggcgtgctcccctcgtctctccacctttgctccgctctggtcaagtcctacgcggcctccggcagcctcgccgccgcgcgcaagctgttcgacgaaatcccccgcccggacgtcccgctatggaacaccctgttgtctgcctgtgcgcgttctgggctcccccaacacgcgttggtgacggcgtccaccatggcgcgggcgggttcttcccggcccgacaacgtctccgtcacgatcctcttgtcagcgtgcgcgcggctgaggagcttggtgcatgggagagagatccatggctacgcggtgagaaatctcgctgctcttgatttgcccttgctgaatgctttggtcagcatgtacgggagatgcggccggctggtgaatgcgagaatggtgttcgacagcatagggagtatgaagagcgtggtttcttggacttgcatgatcaatgcttgctgcgagaatggaaagccagcagaggcactgcaagtgttcgagcaaatgaggcttgctggggtcaaggttgacgaggtaacccttcttgcagtcatctcagcgtgcacaatgttggactgcaggtcagagctgggggagtgggtggaggagtatgcccatgaaaatgggttcttggagaatacccgtgtcgccaacgcactcatacatatgcatggtaagatggggagggtaaggagatcatgtgagatatttgactcgatcactgtaaggacagtggtctcatggacagccataattcaggccctcgccgtgcacgggcatggggtggctgcgcttgtccagttttcgcagatgctcagacaaggtttccagcctgatgaacttgtattcttgagcgtgatcaatgcctgcagtcactcggggctcgtcaatgaagcgcgccaattgttcaagtctatggttgaagagtatcacatcacaccttggatggagcactatgggagcatggtggacctgctgtgcaaatctggtatgctggaagaggcatttgagttcgtcctggctatgccagtgaggcctgaccctgtaatatggcgtgtattgaccggagcatgtcgggatctaggaaatgccattctcgcgaggaaggtggtcgatcatgtgatcgaaatggagcctgaatacGgggggaattatgtgctagcgtcaaacttgtatgctgccaatgaggattggcgacgtgttgtggatgtaaggatggagatgggtgtgtggaaagagacttcaaggtacagtactgctctgtcctatgttgaagtcaatgttgaagaaaatgctgaaagcttgcatcctcctacaaatgatgcatatagatga
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| Protein seq | MSATAAAALRTGAAILAALSDVSACQIHARALKLGVLPSSLHLCSALVKSYAASGSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVTASTMARAGSSRPDNVSVTILLSACARLRSLVHGREIHGYAVRNLAALDLPLLNALVSMYGRCGRLVNARMVFDSIGSMKSVVSWTCMINACCENGKPAEALQVFEQMRLAGVKVDEVTLLAVISACTMLDCRSELGEWVEEYAHENGFLENTRVANALIHMHGKMGRVRRSCEIFDSITVRTVVSWTAIIQALAVHGHGVAALVQFSQMLRQGFQPDELVFLSVINACSHSGLVNEARQLFKSMVEEYHITPWMEHYGSMVDLLCKSGMLEEAFEFVLAMPVRPDPVIWRVLTGACRDLGNAILARKVVDHVIEMEPEYGGNYVLASNLYAANEDWRRVVDVRMEMGVWKETSRYSTALSYVEVNVEENAESLHPPTNDAYR |
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| Function | Pentatricopeptide repeat-containing protein At4g14820 [UniProtKB/Swiss-Prot:O23337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0027950 | OsCMeo_06g0027950.01 | Chr06 | 29201266 | 29202956 | + | NAM | ||
| CDS seq | atgagcgccaccgccgccgcagccttgcgcaccggcgcggccatcctcgccgcgctctccgacgtgtccgcctgccaaatccacgcgcgagcgctgaagctcggcgtgctcccctcgtctctccacctttgctccgctctggtcaagtcctacgcggcctccggcagcctcgccgccgcgcgcaagctgttcgacgaaatcccccgcccggacgtcccgctatggaacaccctgttgtctgcctgtgcgcgttctgggctcccccaacacgcgttggtgacggcgtccaccatggcgcgggcgggttcttcccggcccgacaacgtctccgtcacgatcctcttgtcagcgtgcgcgcggctgaggagcttggtgcatgggagagagatccatggctacgcggtgagaaatctcgctgctcttgatttgcccttgctgaatgctttggtcagcatgtacgggagatgcggccggctggtgaatgcgagaatggtgttcgacagcatagggagtatgaagagcgtggtttcttggacttgcatgatcaatgcttgctgcgagaatggaaagccagcagaggcactgcaagtgttcgagcaaatgaggcttgctggggtcaaggttgacgaggtaacccttcttgcagtcatctcagcgtgcacaatgttggactgcaggtcagagctgggggagtgggtggaggagtatgcccatgaaaatgggttcttggagaatacccgtgtcgccaacgcactcatacatatgcatggtaagatggggagggtaaggagatcatgtgagatatttgactcgatcactgtaaggacagtggtctcatggacagccataattcaggccctcgccgtgcacgggcatggggtggctgcgcttgtccagttttcgcagatgctcagacaaggtttccagcctgatgaacttgtattcttgagcgtgatcaatgcctgcagtcactcggggctcgtcaatgaagcgcgccaattgttcaagtctatggttgaagagtatcacatcacaccttggatggagcactatgggagcatggtggacctgctgtgcaaatctggtatgctggaagaggcatttgagttcgtcctggctatgccagtgaggcctgaccctgtaatatggcgtgtattgaccggagcatgtcgggatctaggaaatgccattctcgcgaggaaggtggtcgatcatgtgatcgaaatggagcctgaatacGgggggaattatgtgctagcgtcaaacttgtatgctgccaatgaggattggcgacgtgttgtggatgtaaggatggagatgggtgtgtggaaagagacttcaaggtacagtactgctctgtcctatgttgaagtcaatgttgaagaaaatgctgaaagcttgcatcctcctacaaatgatgcatatagatga
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| Protein seq | MSATAAAALRTGAAILAALSDVSACQIHARALKLGVLPSSLHLCSALVKSYAASGSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVTASTMARAGSSRPDNVSVTILLSACARLRSLVHGREIHGYAVRNLAALDLPLLNALVSMYGRCGRLVNARMVFDSIGSMKSVVSWTCMINACCENGKPAEALQVFEQMRLAGVKVDEVTLLAVISACTMLDCRSELGEWVEEYAHENGFLENTRVANALIHMHGKMGRVRRSCEIFDSITVRTVVSWTAIIQALAVHGHGVAALVQFSQMLRQGFQPDELVFLSVINACSHSGLVNEARQLFKSMVEEYHITPWMEHYGSMVDLLCKSGMLEEAFEFVLAMPVRPDPVIWRVLTGACRDLGNAILARKVVDHVIEMEPEYGGNYVLASNLYAANEDWRRVVDVRMEMGVWKETSRYSTALSYVEVNVEENAESLHPPTNDAYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0700100 | RBH | 0.051450 | 0.0 | 0.453309 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48660 | RBH | 0.037209 | 0.0 | 0.116424 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0700100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028000 | RBH | 0.0 | 0.0 | 0.375050 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027820 | RBH | 0.0 | 0.630498 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003980 | SBH | 0.0 | 1.597343 | 2.412932 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028020 | RBH | 0.615786 | 2.031232 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0462900 | RBH | 0.1545365 | 0.471809 | 0.135327 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027410 | RBH | 0.0 | 0.047176 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0446500 | RBH | 0.1003935 | 0.235793 | 0.804078 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027580 | RBH | 0.0 | 3.714262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027860 | RBH | 0.068991 | 0.815687 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027830 | RBH | 0.0 | 0.0 | 0.0 |
