Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_03g0019830 OGI:03042170 | 15/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr03:16306557-16308896
Gene Symbol RPS6, RPS6a, RPS6A, OsRPS6, OsRPS6a
DNA seq

TATAAAACAGTCAAGGAGAGAGATATTACGAGACATCAAATGACACAAAAACCAAGAAAATAGTAGGCACAAGTTATATCATCAGAATACATAGCAACTGCAAGTGCTCAAAAATTGTGACAAAGCATCATCTTGTCCACAGAAAACTGCACCAATTACCGAAGAAAAACTAGCAGTACCATGTCTATCCATCACAACGACAAACACTTCCTCATCTATAATGTTTTAAGGTCTTATAGGGGTCTTATGCGGTGGTGGCAGCAGCCTTGGTGGCAGCAGAAAGCTTGGACCTCCTCTTTGCCAAGCTCTCACTCCTGCGTTCCCTCTGCTCCTTGAGCCTCTGGGCAAGCAGCTTCTGGTACTCGGCAGCCTCGGACTTCTTCTTGGCAATTCTTTGCTTCTTCTGGGCGATTCTCGCCCTCTTCCTCTGAAGAGTCAGGGGAGTGACAAGCCTCTGGATCTTAGGAGCCTTGCTAACCTTCTTGCCTGCAGGAAAAAAATAAATGGTTGGTAAATAGGTCAGCTCTACACTAACCATTAAATTGACTGCATATGCTAGGCTATGTCAAAAAATTACAGATTATATCTTAGCTTATTATCTTGATTAGGAGTGTGTTTTTTGTGTTGATTACACAAGCACCAGAGGCATACAATGCAGTCCACAACAAACATAATAGCAAAGCAACTCAAGGTTAATACCGAATGTTAGGAATGCTCACCGTTCTTGGTAGTGAAGGTTCTGCGGTAAGTGTTGACATACTTGCGGACATCATCATCCTTGGCAAGGTTAAACAGCTTCCTGATCTTAGATGCCCTCTTGGGTCCCCTCATCCTGGGCTTCTCAGTGTCAGTCAAGCCAGGAAGGTCATTATCACCCTTCTTTACAATCACCAAGTTGATAACAGAGAGATCTTGGCTGACAATGCAACCACGGACTGACTTCCTTCTGCGCTCACCATCACGCCTGCCATATCCACGGAAGCAGGGGGTACCTGTCAGTATAAAAATGGAACATTCACATTAGAACACCTGCCAGCAAAGCAAAATGAAACATAACCATTCAAATGTAAGCATCTTAAACATCTACCCCTGTGGAGGAGAAGGCGGACACGTCCAGAAGTAAGCACACCCTGCTTCATGGGGAAACCTTGCTTGTCACAGCCTCCCATGATCTTGAATACATAGCCCTTGAATTCCTGTACAAACAGACAAACTTAGTCATCCAACTCATTAAATAGCAAGACAGTTGAAGAATCATGGAGCAAATTGCCAAAGAAATTACTTCGCCAAGAGCATCACCACTGACTTCCTGGGAGATCCTCTTGTCATAAAATGCCCGGCTGCACAATTGATAGGAAAGCACTAATTACATACCATTACAACAGGAGAGCTTGAACAAATATATAACACACCAAACGGACAGATAACTATAATAGTTCTTCTTCCACATAACAACAATAACACCCACACTAACTGATACAGGATTACAAGATAAAACCTAAGCAAGAGAGAGCACTTTTTTCAGTATTACTATAAATGACCATAGATGTTTCAAACTACCTAAACACAGCTAAACCAAAATTACATTCTGATCTAGTGGATAAATTGATGCATTCTATGCTGCCAAAGATCCACCAAAACTAACATAACACTGATGAAACATGGCATTCCCTTCAAGATTTACTGACTATTATACAATGCTTCTACTTTACAGGACTGAACACTCGATTCAGAATTTGAATCAGAGCAAGAAGGCTCAAACACAATGACCCATTCCACACTATCCTTTCCCAAAAAACTTCCAAACATATTTCCCTCGAATATTTCCGAAATCTGATTTAGCACCTACCAATTCTTCATCTTCCAGTAAGAGACTAAAAATAATCTACGAGCCGCACAAACACATAGACCTAAACATCACAACGCGATCATAGACCAGTTCATATTGGGACTAAAGCCGGAGCCCAACTTGCCAACAATAGTAACAAATTACACAACGAAGGACCGAGCGGACAAGCTAGATTAACACGATGCAAGAGATCTCCACGCATTTCAGAACAGATCAGCATCAAGAGAGAGAGAAGGAGGAGCACTCACAGCTTCTGGTCGTCATCGATCTCGAGCTTCTTCTGGCACCCGGTGGTCGGGTTGGCGATGTTGAACTGCGCAAAACATCATCAGGGCGACCACAAAATCAGATCAAACCGCGCTACAAGAAACAACCAGCCGGACCGGATCGAGACGACCGCGTCGCCCGCGGGGAGGGGAGGAGGAGAAATGGGTACCTTCATGGCGGCGGCGGCGGCGGCGCTAGGGCTAGGGTTCGCTCGGGGAGAGAGT

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CDS seq

ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTCCGGGCATTTTATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCTCTTGGCGAAGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGTAGATGTTTAAGATGCTTACATTTGAATGGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGATAATGACCTTCCTGGCTTGACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGTCCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTGCTGCCACCAAGGCTGCTGCCACCACCGCATAA

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Protein seq

MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGRCLRCLHLNGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSAATKAAATTA

Function 40S ribosomal protein S6 [UniProtKB/Swiss-Prot:Q9M3V8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_03g0019830 OsIR64_03g0019830.02 Chr03 16306557 16308883 - NAM
CDS seq

ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTCCGGGCATTTTATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCTCTTGGCGAAGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGTAGATGTTTAAGATGCTTACATTTGAATGGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGATAATGACCTTCCTGGCTTGACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGTCCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTGCTGCCACCAAGGCTGCTGCCACCACCGCATAA

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Protein seq

MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGRCLRCLHLNGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSAATKAAATTA

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Gene Transcript Chromosome Start End Strand Source
OsIR64_03g0019830 OsIR64_03g0019830.01 Chr03 16306557 16308896 - NAM
CDS seq

ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTCCGGGCATTTTATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCTCTTGGCGAAGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGATAATGACCTTCCTGGCTTGACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGTCCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTGCTGCCACCAAGGCTGCTGCCACCACCGCATAA

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Protein seq

MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSAATKAAATTA

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OsIR64_03g0019830.02OsIR64_03g0019830.01AS16306500 bp16307000 bp16307500 bp16308000 bp16308500 bp16309000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr03 16307548 16307644 - OsIR64_03g0019830.02 OsIR64_03g0019830.02,OsIR64_03g0019830.01 All

Expression

Leaf Root Panicle
FPKM 4.532748 18.554544 13.024936

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0390000 RBH 20.406122 15.229557 49.303829
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g27260 RBH 12.783589 9.508755 11.750252
Nipponbare | IRGSP 1.0 | RAP-db Os03g0390000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0020340 RBH 4.159158 76.238930 36.365936
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0020210 RBH 1.715620 43.851398 27.546415
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0020230 RBH 11.714810 139.200836 69.562767
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0020230 RBH 0.829531 8.103829 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0020050 RBH 47.398682 223.085083 144.724655
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0422000 SBH 22.2541185 72.45657 153.3658445
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0024190 RBH 3.443553 15.391063 9.601827
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0260300 RBH 71.8123135 245.747284 164.806122
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0020040 RBH 2.409244 3.237466 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0020060 RBH 3.821332 219.176651 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0020150 RBH 20.321400 216.576782 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0020020 RBH 6.183139 17.669216 12.970838
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0019890 RBH 1.983358 102.339066 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G019920 RBH 2.565111 75.736412 22.758841
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0019780 RBH 14.014906 177.194687 148.921448
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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