Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g27260 | OGI:03042170 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:15622131-15624526 | ||||||||
| Gene Symbol | RPS6, RPS6a, RPS6A, OsRPS6, OsRPS6a | ||||||||||
| DNA seq | TGAGAACTTGACGACAGTTCTTCAAAATTTGAGTTTCACAGAAAATAGCACTAGAAATGCATAACAGGGATATAAAACAGTCAAGGAGAGAGATATTACGAGACATCAAATGACACAAAAACCAAGAAAATAGTAGGCACAAGTTATATCATCAGAATACATAGCAACTGCAAGTGCTCAAAAATTGTGACAAAGCATCATCTTGTCCACAGAAAACTGCTCCAATTACCGAAGAAAAACTAGCAGCACCATGTCTATCCATCACAACGACAAACACTTCCTCATCTATAATGTTTTAAGGTCTTATAGGGGTCTTATGCGGTGGTGGCAGCAGAAAGCTTGGACCTCCTCTTTGCCAAGCTCTCACTCCTGCGTTCCCTCTGCTCCTTGAGCCTCTGGGCAAGCAGCTTCTGGTACTCGGCAGCCTCGGACTTCTTCTTGGCAATTCTTTGCTTCTTCTGGGCGATTCTCGCCCTCTTCCTCTGAAGAGTCAGGGGAGTGACAAGCCTCTGGATCTTAGGAGCCTTGCTAACCTTCTTGCCTGCAGGAAAAAAATAAATGGTTGGTAAATAGGTCAGCTCTACACTAACCATTAAATTGACTGCATATGCTAGGCTATGTCAAAAAATTACAGATTATATCTTAGCTTATTATCTTGATTAGGAGTGTGTTTTTTGTGTTGATTACACAAGCACCAGAGGCATACAATGCAGTCCACAACAAACATAATAGCAAAGCAACTCAAGGTTAATACCGAATGTTAGGAATGCTCACCGTTCTTGGTAGTGAAGGTTCTGCGGTAAGTGTTGACATACTTGCGGACATCATCATCCTTGGCAAGGTTAAACAGCTTCCTGATCTTAGATGCCCTCTTGGGTCCCCTCATCCTGGGCTTCTCAGTGTCAGTCAAGCCAGGAAGGTCATTATCACCCTTCTTTACAATCACCAAGTTGATAACAGAGAGATCTTGGCTGACAATGCAACCACGGACTGACTTCCTTCTGCGCTCACCATCACGCCTGCCATATCCACGGAAGCAGGGGGTACCTGTCAGTATAAAAATGGAACATTCACATTAGAACACCTGCCAGCAAAGCAAAATGAAACATAACCATTCAAATGTAAGCATCTTAAACATCTACCCCTGTGGAGGAGAAGGCGGACACGTCCAGAAGTAAGCACACCCTGCTTCATGGGGAAACCTTGCTTGTCACAGCCTCCCATGATCTTGAATACATAGCCCTTGAATTCCTGTACAAACAGACAAACTTAGTCATCCAACTCATTAAATAGCAAGACAGTTGAAGAATCATGGAGCAAATTGCCAAAGAAATTACTTCGCCAAGAGCATCACCACTGACTTCCTGGGAGATCCTCTTGTCATAAAATGCCCGGCTGCACAATTGATAGGAAAGCACTAATTACATACCATTACAACAGGAGAGCTTGAACAAATATATAACACACCAAACGGACAGATAACTATAACAGTTCTTCTTCCACATAACAACAATAACACCCACACTAACTGATACAGGATTACAAGATAAAACCTAAGCAAGAGAGAGCACTTTTTTCAGTATTACTATAAATGACCATAGATGTTTCAAACTACCTAAACACAGCTAAACCAAAATTACATTCTGATCTAGTGGAAAATTGATGCATTCTATGCTGCCAAAGATCCACCAAAACTAACATAACACTGATGAAACATGGCATTCCCTTCAAGATTTACTGACTATTATACAATGCTTCTACTTTACAGGACTGAACACTCGATTCAGAATTTGAATCAGAGCAAGAAGGCTCAAACACAATGACCCATTCCACACTATCCTTTCCCAAAAAACTTCCAAACATATTTCCCTCGAATATTTCCGAAATCTGATTTAGCACCTACCAATTCTTCATCTTCCAGTAAGAGACTAAAAATAATCTACGAGCCGCACAAACACATAGATCTAAACATCACAACGCGATCATAGACCAGTTCATATTGGGACTAAAGCCGGAGCCCAACTTGCCAACAATAGTAACAAATTACACAACGAAGGACCGAGCGGACAAGCTAGATTAACACGATGCAAGAGATCTCCACGCATTTCAGAACAGATCAGCATCAAGAGAGAGAGAGAAGGAGGAGCACTCACAGCTTCTGGTCGTCATCGATCTCGAGCTTCTTCTGGCACCCGGTGGTCGGGTTGGCGATGTTGAACTGCGCAAAACATCATCAGGGCGACCACAAAATCAGATCAAACCGCGCTACAAGAAACAACCAGCCGGACCGGATCGAGACGACCACGTCGCCCGCGGGGAGGGGAGGAGGAGAAATGGGTACCTTCATGGCGGCGGCGGCGGCGGCGCTAGGGCTAGGGTTCGCTCGGGGAGAGAGT
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| CDS seq | ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTCCGGGCATTTTATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCTCTTGGCGAAGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGATAATGACCTTCCTGGCTTGACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGTCCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTGCTGCCACCACCGCATAA
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| Protein seq | MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSAATTA |
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| Function | 40S ribosomal protein S6 [UniProtKB/Swiss-Prot:Q9M3V8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g27260 | LOC_Os03g27260.1 | Chr03 | 15622131 | 15624526 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTCCGGGCATTTTATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCTCTTGGCGAAGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGATAATGACCTTCCTGGCTTGACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGTCCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTGCTGCCACCACCGCATAA
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| Protein seq | MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSAATTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.783589 | 9.508755 | 11.750252 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0390000 | RBH | 20.406122 | 15.229557 | 49.303829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42950 | RBH | 15.245823 | 18.428549 | 16.200197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0390000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020340 | RBH | 4.159158 | 76.238930 | 36.365936 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020210 | RBH | 1.715620 | 43.851398 | 27.546415 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020230 | RBH | 11.714810 | 139.200836 | 69.562767 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020230 | RBH | 0.829531 | 8.103829 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020050 | RBH | 47.398682 | 223.085083 | 144.724655 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0421900 | SBH | 11.3945355 | 32.6093505 | 14.5273875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0019830 | RBH | 4.532748 | 18.554544 | 13.024936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0260300 | RBH | 71.8123135 | 245.747284 | 164.806122 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020040 | RBH | 2.409244 | 3.237466 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020060 | RBH | 3.821332 | 219.176651 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020150 | RBH | 20.321400 | 216.576782 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020020 | RBH | 6.183139 | 17.669216 | 12.970838 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019890 | RBH | 1.983358 | 102.339066 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G019920 | RBH | 2.565111 | 75.736412 | 22.758841 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019780 | RBH | 14.014906 | 177.194687 | 148.921448 |
