Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_01g0015850 OGI:01009580 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr01:14298070-14299987
Gene Symbol -
DNA seq

CGTTGTGGAGGGAATTTGGAGAAGCTGACATCTAGCGAGCCATTGGATCCCCTCTCACACGAAGCTTCTATCGGCAGTTCCTCCAGAGTATGGACTATAGGTGACGAAGAATTCCTCCACATGAACAATTTCGGTAAGTCCAATCCTGATTTGTTCAGTGTTTAGTTTACATGCTCTGAATTCCTTCACATCTGAAGCTTTCTTGATTGTGCTTTCTTTTTTTTCTTCAATCTGGATAGTATTGTCTAATTTATACTATCTGATAGAGGTTGCATTTTCAGAAATTTTCATCATGTTCTTTTGTGTATGCTTGCAATTGTAGCAAAATTGCCTGACTTGAACAAGGGTATGTCTGCTGTATGTGCTGATGTACTTCACTGTGGTGTATATCCTGCATTTATGTCCAGAAGTATATAGGGTATGTACAGCATGCAGGAAAGAATAGTCAGTGGTGTTGTGCTGGAATTTCAGTTTGACACTATGTAGTGAGTATAATATGCTATCAAATTTATGCTCTGAGTTTGACACTATGGAAATTCAGTATGTACTGAGTTTCATATACGATGCTCTGAAATTTGACCTGTTGAACAGTTATCTGAACCTTGTCGCTGTCAGGATCGATATAGGAACATTTCTATGAACCTTGTCATTTTCAGTATCCAAATTAGCAACATTTGTGTGCTCTCTCCATGCGAATGCACAGCTTTTGATTAATATTATGTGTACACAAAGTTGTCACCATCCATTACATGTGAACTTTCAGATAACAGAATGCATTTTTTGTCCAGAAATTATCACTTGTTTGTCTTTTGTTAGTCTTTTTTTTTCTCAAGTACAAGGTTATGATTTTTTATCTATGGACAGATGATATGGAGCGAGAGCGATATTACACAAACTTGATCAATGATGAGAGCAACCATTTTGGCTCGAGTGAGATGGGAAGCCAGTATGATGATGAACAAGAACCAGTTGTGAATGAAAATGTTGCTGTGAGACCGAACCAAAAAAGATCAAAAAATTTCAGTTTGGAGGAGGACAATCTTTTGGTGTCGGCGTGGATAAATGTTTCTTTCGATCCGGTTCAAGGGACGGATCAATCTCACGGTACATATTGGGGACGTATTCATGACTACTTTCATCAGAACAAGGAATTCGAATCAGATCGCTCCCAAAGTTCACTTGTACATCGTTGGTCCACTATACAAGAACATGTCAATAAGTATTGTGGTTTCTTAAGTCAGATTCAGAATCGAAATCAGAGTGGTGTCAATCATGAGGACATGGTAATATATTGCTTGTGTTGCTTATTTTCCAATCGTCTCCTTTATGTTTCTGACTTCAGTTCATTTATTTGCAGCATGTGCAAGCAAGCCTGATGTACAAGAAGAAAGAGGAAAAGAAGTTTCAGTTCATGCATTGCTACAACATTTTAAAGAATCTGCCAAAGTGGGATGATAAGCGGAATCAGCTGGCAGCTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA

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CDS seq

ATGAACAATTTCGATGATATGGAGCGAGAGCGATATTACACAAACTTGATCAATGATGAGAGCAACCATTTTGGCTCGACTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA

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Protein seq

MNNFDDMERERYYTNLINDESNHFGSTSKTSSKKQKKTANDSPAISTPACNVDENRAADPENTVGEGRPMGRKKAKQQMRERSDLSRKESLDYLWDKKKEADAEKERKFEERYQIAFALEQKRIDLERDKFEFKRMTKEDKLLRTDTSAMSIEEQEYYKNVKNQILSRRSAQA

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0015850 OsIR64_01g0015850.01 Chr01 14298070 14299987 + NAM
CDS seq

ATGAACAATTTCGATGATATGGAGCGAGAGCGATATTACACAAACTTGATCAATGATGAGAGCAACCATTTTGGCTCGACTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA

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Protein seq

MNNFDDMERERYYTNLINDESNHFGSTSKTSSKKQKKTANDSPAISTPACNVDENRAADPENTVGEGRPMGRKKAKQQMRERSDLSRKESLDYLWDKKKEADAEKERKFEERYQIAFALEQKRIDLERDKFEFKRMTKEDKLLRTDTSAMSIEEQEYYKNVKNQILSRRSAQA

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0228500 SBH 3.581976 5.416568 8.924374
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g12690 RBH 2.199581 2.754985 2.222146
Nipponbare | IRGSP 1.0 | RAP-db Os12g0228500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0020300 SBH 0.000000 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0007170 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0020250 SBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0004690 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0003760 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0049400 SBH 0 0.0820105 0.072411
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0015840 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0355900 RBH 0.0086205 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0018610 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0004670 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G034500 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0018670 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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