Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0228500 | OGI:01009580 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:6985010-6990048 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACAAAAAAACAATTTCCAGCAATTTTGTAGTAGTAGCAAATGCTCCGGCTACATAAAACAGTACCAAAACAAGATAGTAAAATTTACTAGTCCATTAAGTAGACTCTATAGCTAAAGATCTAACAAATTTTGAATGCTAATTGATGAGTAATAAGACTAATTTATGCTTGAGCTGAACGACGACTTAGAATTTGATTCTTCACATTTTTATAGTACTCCTGCTCCTCGATGCTCATTGCACTAGTATCAGTCCTCAAAAGCTTATCTTCTTTTGTCATTCTCTTGAACTCGAACTTGTCTCTCTCCAAATCAATCCGCTTTTGCTCAAGTGCAAAAGCAATTTGGTACCTCTCCTCAAACTTTCGCTCCTTCTCCGCATCGGCCTCTTTCTTCTTATCCCATAGATAGTCTAAGGACTCTTTCCGTGATAGATCCGAGCGTTCGCGCATCTGTTGTTTCGCCTTCTTCCTCCCCATGGGTCTTCCCTCACCTACTGTATTCTCAGGATCAGCAGCCCTATTCTCATCAACATTACATGCAGGAGTAGATATCGCAGGAGAATCATTGGCGGTCTTCTTCTGCTTCTTGCTTGAAGTTTTACTAGCTGCCAGCTGATTCCGCTTATCATCCCACTTTGGCAGATTCTTTAAAATGTTGTAGCAATGCATGAACTGAAACTTCTTTTCCTCTTTCTTCTTGTACATCAGGCTTGCTTGCACATGCTGCAAATAAATGAACTGAAGTCAGAAACATAAAGGAGACGATTGGAAAATAAGCAACACAAGCAATATATTACCATGTCCTCATGATTGACACCACTCTGATTTCGATTCTGAATCTGACTTAAGAAACCACAATACTTATTGACATGTTCTTGTATAGTGGACCAACGATGTACAAGTGAACTTTGGGAGCGATCTGATTCGAATTCCTTGTTCTGATGAAAGTAGTCATGAATACGTCCCCAATATGTACCGTGAGATTGATCCGTCCCTTGAACCGGATCGAAAGAAACATTTATCCACGCCGACACCAAAAGATTGTCCTCCTCCAAACTGAAATTTTTTGATCTTTTTTGGTTCGGTCTCACAGCAACATTTTCATTCACAACTGGTTCTTGTTCATCATCATACTGGCTTCCCATCTCACTCGAGCCAAAATGGTTGCTCTCATCATTGATCAAGTTTGTGTAATATCGCTCTCGCTCCATATCATCTGTCCATAGATAAAAAATCATAACCTTGTACTTGAGAAAAAAAAAGACTAACAAAAGACAAACAAGTGATAATTTCTGGACAAAAAATGCATTCTGTTATCTGAAAGTTCACATGTAATGGATGGTGACAACTTTGTGTACACATAATATTAATCAAAAGCTGTGCATTCGCATGGAGAGAGCACACAAATGTTGCTAATTTGGATACTGAAAATGACAAGGTTCATAGAAATGTTCCTATATCGATCCTGACAGCGACAAGGTTCAGATAACTGTTCAACAGGTCAAATTTCAGAGCATCGTATATGAAACTCAGTACATACTGAATTTCCATTGTGTCAAACTCAGAGCATAAATTTGATAGCATATTATACTCACTACATAGTGTCAAACTGAAATTCCAGCACAACACCACTGACTATTCTTTCCTGCATGCTGTACATACCCTATATACTTCTGGACATAAATGCAGGATATACACCACAGTGAATTACATCAGCACATACAGCAGACATACCCTTGTTCAAGTCAGGCAATTTTGCTACAATTGCAAGCATACACAAAAGAACATGATGAAAATTTCTGAAAATGCAACCTCTATCAGATAGTATAAATTAGACAATACTATCCAGATTGAAGAAAAAAAAAGAAAGCACAATCAAGAAAGCTTCAGATGTGAAGGAATTCAGAGCATGTAAACTAAACACTGAACAAATCAGGATTGGACTTACCGAAATTGTTCATGTGGAGGAATTCTTCGTCACCTACAGTCCATACTCTGGAGGAACTGCCGATAGAAGCTTCGTGTGAGAGGGGATCCAATGGCTCGCTAGATGTCAGCTTCTCCATGGCCTCGGATGCCTGAAAACCGGAGTAGCGTTGTGGAGGGCGCGCATGGCCGGCGGGCGGCGGTGGGGGGCGCGCATGGCCGCCGGGCGGCGGTGGGGGCCGCGCATGGCCGCCGGGCGGCGGTGTGGGGCGCGGATGGCCGCCAGGCGGTGGTGGAGGGCACGGATGGCCGCCGGGCCAGAACTCGCCGTACCGCGGAAACGGCATACCTCCGGCCGTCATCGGGACACCACGCCCCGTGCCTTGCAAAAGGGAAAAGGGAGCTGCCGCCGATGAAGAGGACGCCGCCGCCGAGGAAGAGGGTGCCCCCACCGAGGAAGAAGGTGTAGCCGCCGAGGAGCGAGGGCGCGGAGAAGGCTTCGCCGCTGAGGAGCGAGGGCGCGGAGAAGTGCGCGGGAACATTTTCCCTTTGCGCGCGCGAGAGACTGCTTTGCGCGCGAGAGAGACCGACGAGGAAATATTGGGAACAAAATCGCTTCCCTGTTTGTGAGGAACGATATATGCGGACTGAGGAACCAGAGATATTGGGATATTAGTTAGAGAATCTGTTGGATCTGTTTCTTGATCAAAATTCCCTAAATCACAGGATAGGGAATTGAAAAAGGAAGCTGTTGGGCATGCTCTAAGTGCCATATCAAATGCCAAATGGAACAAAGACCAAGTCAAACCAACCACGTTGGAGCCACATCAACCAAAACCGTTTTCCAAACCGCTGAAGGACCTCGTTTGCACTGGTTTTGACAGTTTAGGGACGTATCTGGTTTTAGGATTGAAGGATGAAAATCGGATTCGGTATAAAGTTAAGAGACCTGGGATGAACTTATTTCATTCGTAAACGATCCTCCCTTACTGAGCTATGTAAATGGGCCTCCCAGCGTAATGGGCCACGACTCTGACAAGCTCCTTGCTCGATTTTTTGGAGGAAAAGTCCCCTTAAGTTTCATTCGCATCCATCAATCGTACACCCGTGCACAAGTCCCCTAACTTTTAAAACCAAATCAATTTACATCTTTAGAATTGTGCATCCCATTGAATAAAAAATTTTGAAGATTGTCTTTAAAGAAGATTAGACATCAGTTGAATAAAAGATTTTGAAGATTGTCTTTTAAAGAAGATTAGACATCAGTTAATCCTGACTTCGCATAATTTTACCAGGTTGACTCATCTGCTCGTGTCGTTCCAACCTGTATTAAATAGAAAGGTCATTCGTTCGTTGGTTCAACGGGCCATTTCTTGCCGCGGTAATATGACCGAACTGAGTCTTAATCGAGAGGTGAGCGTTGATTATTTCAGTAGTTATCTCTATTTTACATTTTGTTCGACATCGCCAATTACGAGTTTTCAAAACGATATAAATTTATTTCTCACTATAAATTAACAGTTGTCGATTTGAAAATGCGAACAAAAAAACAAACGAAGTACTTCATAGAGATATAGCGGCGGTTCTTGCAAGTGAGATCCAATCTCAAACAATCCAAAAGCCTAAATCAGCAAAAAAAAAAAGACAAAATTGCTCTGGCCATAAATCTGAGCCCAAAATCAAGACCCAATCAAAACAAAAGATTGCTCTGGCCATAAATCTGAGCCCAAAATCAAGACCCAATCAAAACAAAAGATACAATCAAGAAAGTGGATGTAGCAGCTTGTTCGAGGCCGTCACAAAACAGAGAAAATCTGAGCGGCACGGAGAACTGCGTTTGTTCGTTGTCGCCAACCTTCAATGCAAAGATAGCCACTGCATCTGGCCCCTTTGCTCTGCAAATTGGCTTTCTTCCTGATGATTCCTACAACCCCAACTCGGACCAACCAATTCCAAATACTACAAGAAACCCAACACATCCAAAATCTACCCAGATCAGCAACTCGTTTCGGCTCAATGGCAAACGAAAGAAATCACATAAACAAGTTGCCTGACTGACTGAAACAACACAAAAAATGGAAAAACAGATCAGACAAGGCAAGAACCGATGGAAGATTCACCATGGACAGAAGGAAGATCCAAATACGAGACGCGAAGCAATGGAGGCGGAGCAGTGCGGGGGAGGCGAGACGATGGATTGACGGCGGCTTGGAGGAGCTATTTAAATAGGGGGCATGTGGGTTGAGAGAGCGAAACCCTAATCCTCTTGTGCGGTTCCAGTTGGGCTAGATGGGCTTTCTCATGGCCCAGATAGCTAAAACGAAATTATGGGCTCGGTATTCTCTACCAGTAGAGAAAGAGCGGCAGGTGGATTTACGATGGAATTCTTTGGATTTTTTTTATTTTCATTTTTTATTAAAATATTTTATCTCTAGAAATGGTAAAAATGACTTACAATGGAGGGATCTTTTAAGACATTTTGGTGGAGCGTCCCCTTTGTTCACGATCCCCTCCGCCCTCCGCACTTCCTCTGTCCGTCCCTCCTAAAGAAACCGACCGAATCTATCCCCGTCTCTCCTATAGAAAACCGATAGAGTTTAACCCAAAATTCCCCCAAAACCTAACCAAATCGGGCCTAAAAACATCTTTATGGTAAGAACAATTGAATCCTAATTAAGAAGAAAAAGAAGAGAAATCCAGTCAGATAAAAGACAAAGCCAAATATACACTCAATCCGGTAGAGTGGAAAATCGCTCATCTGGGGTGGAGGCCGACAGATCCGCGTCACCCTTGTCCGATCCACCGCCGCTGTCGCACGGAGGCATGCAGCTCGAGCTCGAAGATGGCCACGACACTGGCTGGATCCGGTGAGGAGAGGTGAGGCCGCTCAATCCGCCATCGTGGCAGGTCGATCCGTCGCCGGGGAGCTCGATTTTTCATCGGGGTCGCTTGATTCGCCGCGACTGGGAGGAGGAGTTCATCGGTGGTGGCAGTAGCATCTCCATGACCGGAATCCGAATAGGGGGAAGAAATTGGTGGCGTCAATTTCTGGGAGCGGAGGGAGCAGAGGCGATTTTTGGGGTAACGTCGATGGTTTCTGAGGGAGTGGGGA
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| CDS seq | TATGATGATGAACAAGAACCAGTTGTGAATGAAAATGTTGCTGTGAGACCGAACCAAAAAAGATCAAAAAATTTCAGTTTGGAGGAGGACAATCTTTTGGTGTCGGCGTGGATAAATGTTTCTTTCGATCCGGTTCAAGGGACGGATCAATCTCACGGTACATATTGGGGACGTATTCATGACTACTTTCATCAGAACAAGGAATTCGAATCAGATCGCTCCCAAAGTTCACTTGTACATCGTTGGTCCACTATACAAGAACATGTCAATAAGTATTGTGGTTTCTTAAGTCAGATTCAGAATCGAAATCAGAGTGGTGTCAATCATGAGGACATGCATGTGCAAGCAAGCCTGATGTACAAGAAGAAAGAGGAAAAGAAGTTTCAGTTCATGCATTGCTACAACATTTTAAAGAATCTGCCAAAGTGGGATGATAAGCGGAATCAGCTGGCAGCTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA
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| Protein seq | YDDEQEPVVNENVAVRPNQKRSKNFSLEEDNLLVSAWINVSFDPVQGTDQSHGTYWGRIHDYFHQNKEFESDRSQSSLVHRWSTIQEHVNKYCGFLSQIQNRNQSGVNHEDMHVQASLMYKKKEEKKFQFMHCYNILKNLPKWDDKRNQLAASKTSSKKQKKTANDSPAISTPACNVDENRAADPENTVGEGRPMGRKKAKQQMRERSDLSRKESLDYLWDKKKEADAEKERKFEERYQIAFALEQKRIDLERDKFEFKRMTKEDKLLRTDTSAMSIEEQEYYKNVKNQILSRRSAQA |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0228500 | OsNip_12t0228500-01 | Chr12 | 6985010 | 6986144 | - | RAP2018-11-26 | ||
| CDS seq | TATGATGATGAACAAGAACCAGTTGTGAATGAAAATGTTGCTGTGAGACCGAACCAAAAAAGATCAAAAAATTTCAGTTTGGAGGAGGACAATCTTTTGGTGTCGGCGTGGATAAATGTTTCTTTCGATCCGGTTCAAGGGACGGATCAATCTCACGGTACATATTGGGGACGTATTCATGACTACTTTCATCAGAACAAGGAATTCGAATCAGATCGCTCCCAAAGTTCACTTGTACATCGTTGGTCCACTATACAAGAACATGTCAATAAGTATTGTGGTTTCTTAAGTCAGATTCAGAATCGAAATCAGAGTGGTGTCAATCATGAGGACATGCATGTGCAAGCAAGCCTGATGTACAAGAAGAAAGAGGAAAAGAAGTTTCAGTTCATGCATTGCTACAACATTTTAAAGAATCTGCCAAAGTGGGATGATAAGCGGAATCAGCTGGCAGCTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA
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| Protein seq | YDDEQEPVVNENVAVRPNQKRSKNFSLEEDNLLVSAWINVSFDPVQGTDQSHGTYWGRIHDYFHQNKEFESDRSQSSLVHRWSTIQEHVNKYCGFLSQIQNRNQSGVNHEDMHVQASLMYKKKEEKKFQFMHCYNILKNLPKWDDKRNQLAASKTSSKKQKKTANDSPAISTPACNVDENRAADPENTVGEGRPMGRKKAKQQMRERSDLSRKESLDYLWDKKKEADAEKERKFEERYQIAFALEQKRIDLERDKFEFKRMTKEDKLLRTDTSAMSIEEQEYYKNVKNQILSRRSAQA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0228500 | OsNip_12t0228500-02 | Chr12 | 6985012 | 6990048 | - | IsoSeq | ||
| CDS seq | ATGTTTCTTTCGATCCGGTTCAAGGGACGGATCAATCTCACGGTACATATTGGGGACGTATTCATGACTACTTTCATCAGAACAAGGAATTCGAATCAGATCGCTCCCAAAGTTCACTTGTACATCGTTGGTCCACTATACAAGAACATGTCAATAAGTATTGTGGTT |
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| Protein seq | MFLSIRFKGRINLTVHIGDVFMTTFIRTRNSNQIAPKVHLYIVGPLYKNMSISIVV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.581976 | 5.416568 | 8.924374 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0169300 | RBH | 0.918143 | 1.478005 | 2.613716 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12690 | RBH | 2.199581 | 2.754985 | 2.222146 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0228500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016380 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016500 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004850 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016180 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015720 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0049400 | SBH | 0 | 0.0820105 | 0.072411 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0355900 | SBH | 0.0086205 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016170 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016130 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015880 | SBH | 0.0 | 0.0 | 0.0 |
