Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0015450 | OGI:01041860 | 7/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:13762219-13763214 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTTATGTTACACTAGTTCTAATCAATGTCAGGTATATCTACCTCGCAATCATTCCCGTTATCATGCTCGTCTTCATAAGTGCTCTTTGCAACGAGATATCTTTGAAGAGCAAATTGAACCGCATCAGCAGTAGTGCTGAGGCTAGGGAAGTTGGAGGCAGTGGATCTAAGAAAGCAGATGAAAATTGTGACGATGCTACGAAACAAGATTGCAACAACTCTAACGAAGATGAACATAATCATGGTAATGACAAGAAAGCTGAGGTGATGGTGACAATAGCAGTGATGCCGTACTGGGTGCTATGCTTGATGGGACAGTTCTGTGGTGCTGACAATTTCGTCACCTCGTACTTCCTTCTTTTCCTCAGTTCCAGCTTAGGAGCACTGACGCTGATGATCGCGAGGCTGGCGTCTGAAATAGCCCCACGGTTAGCACCTGTGCTGGACTTGCTCCACAAGAGTACACTAGTAGTGTTGCTGCTAACAGCGCACACCATCGCCACGGAGTTTCTGGGTCAAGACATGGTGGTAGCATTCATGCCGGAGCTTCTTGCAGTTATCCTGTGGCTTGGCATTCACCTCGACAATGGCGGATCTTCTACCATGAGCATCCAGAAAAAGGTCACTTCATCGCAAGAGAAAGAAAAGAAAATAGATATCACATCATACGCAAATGGCGTAGTGGCCATTCTCATCGTCGTCACGGCTGCTGCTTTGGTATACCTGGCCGGTATGGATGGGTTGGAATTGGAAGGACGGAAAATGTGGTCTTCTTGGGTTAGAAGGGTGTTCCCTGCCGGCTGCATTTCAGGTCTCCTGCCCTACTTTACTGCCCTGATGATAAGTCACTGGCCGGGATTAAGCCCAGACTCGTCCAAGGGGGCTGTTCAGTTGCTCTGGTTTTGGGCAAATGTTTCATTGGCAGCAACAACTATGATGCTCGTATGTGCGTGTACGCTGCTGGCTGCGACATATATATCATCAAGACGTTGA
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| CDS seq | ATGGCTTATGTTACACTAGTTCTAATCAATGTCAGGTATATCTACCTCGCAATCATTCCCGTTATCATGCTCGTCTTCATAAGTGCTCTTTGCAACGAGATATCTTTGAAGAGCAAATTGAACCGCATCAGCAGTAGTGCTGAGGCTAGGGAAGTTGGAGGCAGTGGATCTAAGAAAGCAGATGAAAATTGTGACGATGCTACGAAACAAGATTGCAACAACTCTAACGAAGATGAACATAATCATGGTAATGACAAGAAAGCTGAGGTGATGGTGACAATAGCAGTGATGCCGTACTGGGTGCTATGCTTGATGGGACAGTTCTGTGGTGCTGACAATTTCGTCACCTCGTACTTCCTTCTTTTCCTCAGTTCCAGCTTAGGAGCACTGACGCTGATGATCGCGAGGCTGGCGTCTGAAATAGCCCCACGGTTAGCACCTGTGCTGGACTTGCTCCACAAGAGTACACTAGTAGTGTTGCTGCTAACAGCGCACACCATCGCCACGGAGTTTCTGGGTCAAGACATGGTGGTAGCATTCATGCCGGAGCTTCTTGCAGTTATCCTGTGGCTTGGCATTCACCTCGACAATGGCGGATCTTCTACCATGAGCATCCAGAAAAAGGTCACTTCATCGCAAGAGAAAGAAAAGAAAATAGATATCACATCATACGCAAATGGCGTAGTGGCCATTCTCATCGTCGTCACGGCTGCTGCTTTGGTATACCTGGCCGGTATGGATGGGTTGGAATTGGAAGGACGGAAAATGTGGTCTTCTTGGGTTAGAAGGGTGTTCCCTGCCGGCTGCATTTCAGGTCTCCTGCCCTACTTTACTGCCCTGATGATAAGTCACTGGCCGGGATTAAGCCCAGACTCGTCCAAGGGGGCTGTTCAGTTGCTCTGGTTTTGGGCAAATGTTTCATTGGCAGCAACAACTATGATGCTCGTATGTGCGTGTACGCTGCTGGCTGCGACATATATATCATCAAGACGTTGA
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| Protein seq | MAYVTLVLINVRYIYLAIIPVIMLVFISALCNEISLKSKLNRISSSAEAREVGGSGSKKADENCDDATKQDCNNSNEDEHNHGNDKKAEVMVTIAVMPYWVLCLMGQFCGADNFVTSYFLLFLSSSLGALTLMIARLASEIAPRLAPVLDLLHKSTLVVLLLTAHTIATEFLGQDMVVAFMPELLAVILWLGIHLDNGGSSTMSIQKKVTSSQEKEKKIDITSYANGVVAILIVVTAAALVYLAGMDGLELEGRKMWSSWVRRVFPAGCISGLLPYFTALMISHWPGLSPDSSKGAVQLLWFWANVSLAATTMMLVCACTLLAATYISSRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0015450 | OsIR64_01g0015450.01 | Chr01 | 13762219 | 13763214 | + | NAM | ||
| CDS seq | ATGGCTTATGTTACACTAGTTCTAATCAATGTCAGGTATATCTACCTCGCAATCATTCCCGTTATCATGCTCGTCTTCATAAGTGCTCTTTGCAACGAGATATCTTTGAAGAGCAAATTGAACCGCATCAGCAGTAGTGCTGAGGCTAGGGAAGTTGGAGGCAGTGGATCTAAGAAAGCAGATGAAAATTGTGACGATGCTACGAAACAAGATTGCAACAACTCTAACGAAGATGAACATAATCATGGTAATGACAAGAAAGCTGAGGTGATGGTGACAATAGCAGTGATGCCGTACTGGGTGCTATGCTTGATGGGACAGTTCTGTGGTGCTGACAATTTCGTCACCTCGTACTTCCTTCTTTTCCTCAGTTCCAGCTTAGGAGCACTGACGCTGATGATCGCGAGGCTGGCGTCTGAAATAGCCCCACGGTTAGCACCTGTGCTGGACTTGCTCCACAAGAGTACACTAGTAGTGTTGCTGCTAACAGCGCACACCATCGCCACGGAGTTTCTGGGTCAAGACATGGTGGTAGCATTCATGCCGGAGCTTCTTGCAGTTATCCTGTGGCTTGGCATTCACCTCGACAATGGCGGATCTTCTACCATGAGCATCCAGAAAAAGGTCACTTCATCGCAAGAGAAAGAAAAGAAAATAGATATCACATCATACGCAAATGGCGTAGTGGCCATTCTCATCGTCGTCACGGCTGCTGCTTTGGTATACCTGGCCGGTATGGATGGGTTGGAATTGGAAGGACGGAAAATGTGGTCTTCTTGGGTTAGAAGGGTGTTCCCTGCCGGCTGCATTTCAGGTCTCCTGCCCTACTTTACTGCCCTGATGATAAGTCACTGGCCGGGATTAAGCCCAGACTCGTCCAAGGGGGCTGTTCAGTTGCTCTGGTTTTGGGCAAATGTTTCATTGGCAGCAACAACTATGATGCTCGTATGTGCGTGTACGCTGCTGGCTGCGACATATATATCATCAAGACGTTGA
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| Protein seq | MAYVTLVLINVRYIYLAIIPVIMLVFISALCNEISLKSKLNRISSSAEAREVGGSGSKKADENCDDATKQDCNNSNEDEHNHGNDKKAEVMVTIAVMPYWVLCLMGQFCGADNFVTSYFLLFLSSSLGALTLMIARLASEIAPRLAPVLDLLHKSTLVVLLLTAHTIATEFLGQDMVVAFMPELLAVILWLGIHLDNGGSSTMSIQKKVTSSQEKEKKIDITSYANGVVAILIVVTAAALVYLAGMDGLELEGRKMWSSWVRRVFPAGCISGLLPYFTALMISHWPGLSPDSSKGAVQLLWFWANVSLAATTMMLVCACTLLAATYISSRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.111982 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0347200 | SBH | 0.118631 | 0.243319 | 3.853573 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24430 | SBH | 0.037960 | 0.381483 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0343400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016030 | SBH | 0.0 | 0.0 | 0.370016 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015650 | SBH | 0.0 | 0.0 | 0.438095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015890 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015350 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015480 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0228500 | RBH | 0.0189245 | 0.008784 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015460 | SBH | 0.082485 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0229200 | SBH | 1.4762585 | 4.314178 | 0.285945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015420 | SBH | 0.000000 | 0.108019 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015330 | RBH | 0.0 | 2.137284 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015510 | RBH | 0.0 | 15.264734 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015470 | SBH | 0.605144 | 0.081447 | 0.738291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015710 | RBH | 0.0 | 0.822031 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015480 | RBH | 0.0 | 0.0 | 0.0 |
