Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_11g0023370 OGI:11077650 | 16/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr11:29918844-29923558
Gene Symbol -
DNA seq

cccaagtagatgggtcagagcaaacttccagcttgtgcaagatgaatgctattgagccttgttacgtgcagacttatgtcttctcatgctgaattatcactccataaggtaagatttgcatgcagtatacttgattaaaacccctcaacttgttgccggttacttctttctcctcgtttacctttaacccaagaaactcactgaatttttttttcctttctgctgacctcccccctgttcttctcctgtcacctttggtgactcctgtacagtgcttacctctctaaatacaaaaccagctccgctggcttaggtttcaagaaatgtaacccccattattccagttctttagcttcagtatgctaacttgctcaatacacatggcaaaacaacctatttaaaaacataccgaaatgtaaccccattattccagtcctttactgagatgtgcccctctgttgcaaagatactctgaaactgattgaactttgtccattttcagatcgtgtaattgtcataaataatttgattggaaatttttggtgcatcaccatcaacgagtttctctatggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagagatcattacagaggaggcaatactaattttaggtgtaaaagaagaactcagaaaactgcaggaaagaatgaaacaaatacagtgctttatcaatgatgctgagcgaaggggcatggaagactcagcggtacacaattggatttctcggctaaaagatgttatgtatgatgccgatgacattatcgatttggctagttttgaaggaaacaagctattaaatggccattcttcttcacctagaaaaacaactgcatgcagtgcgctttcacctctctcttgcttttccaatattcgggttcgccatgagattggtgataaaattagaacgctgaaccgaaaattagctgaaatagaaaaggataaaatatttacaacacttgagaatacacaaccagctgataaaggttcaacatcagaactgagaaaaacatctcacattgttgaacccaaccttgtggggaaagaaatagtgcatgcttgtagaaagttggtgagcctggtggttgcacacaaggaagacaaggcctacaagctcgctattgttggaacagggggaattggaaagacaacactagctcagaaagtattcaatgatcagaaattaaaaggaaccttcaacaaacatgcttggatttgtgtttctcaggactacaccccagtctctgttttgaaacaactacttagaacaatggaggttcaacatgcacaagaagaatcagctggagagctccaaagcaagcttgaattagctattaaagacaagagtttttttcttgtgttggatgatctatggcattccgatgtatggaccaatctactacgaactccattgcatgctgcaacctcaggaataattttgataactactcggcaagatattgtcgctagggaaataggggttgaggaagcacatcgtgttgacctaatgtcaccagctgttggttgggagctactttggaagagcatgaacattcaggacgagaaagaagtgcaaaatctgcgagacatagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttactgctcgagtattggcaagcaaagataaaacagagaacgaatggaaaaggattttagctaaaaacgtttggtccatggctaaactccctaaggaaataagtggtgcactatatctaagttatgatgatttaccactgcatttgaagcaatgttttctttattgtattgtatttcctgaagactggaccttgacacgtgatgagcttatcatgatgtgggttgctgaaggctttgtagaagtgcacaaagatcaattactagaagatacagcagaagaatactactatgagctaataagtaggaatctcctgcaaccagttgacacatattttgatcagagcggatgcaaaatgcatgatctcttaaggcaacttgcttgttatctatcaagggaagaatgtcatattggagatctaaaaccattagtagacaatactatatgtaaactacgacgcatgttagttgtcggagagaaagacacggtggtcatacctttcactggtaaggaggaaattaagttgagaacttttacaactgatcatcagctacagggagttgataacacatttttcatgagattaactcatcttcgtgttttggatctaagtgactcacttgtgcaaacaataccagattatattggaaatttaatccatttacgtatgtttgatcttgatggaaccaacatatcttgtctcccagagtccattggttcccttcaaaaccttctcatattgaacttgaagaggtgtaaatatctgcacttccttcctttggcaacaactcaactgtacaatttgaggcggcttggtcttgccgatacaccaataaaccaagtcccaaaagggataggaagactgaaatttctcaatgatttagaaggatttcctatcggtggtggaagtgacaataccaaaatacaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatctcaaagttctgaaactacactgcactgaacagacagatgaagcatattcagaggaaaatgctagaaacattgaaaagatcttcgagaagctaacacctccacacaacttagaagatctttttgttgggaatttcttttgttgtagattccccacctggcttagtacttcccaattatcttcactgacatatttgaaactcacagattgcaaatcctgcttgcagcttccaccaatcggacagataccaaacttgaaatacttgaaaattaagggagcaagttcaatcaccaagattggacccgaattcgttggctcctgggagggtaatctcagatccacagagacaattgctttccccaagcttgaattgttgatcatcgaggatatgcccaactgggaagagtggtcctttgttgaagaagaagaagaggtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagccaaagggggaagaagccctgtctccaactccaaggtcgtcgtggctgctgccttgtttgacaaggttggaacttttgaactgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggagttctcgataagatacacaagttgcttgaagacggtggaggacctcccattcctctctggttgccttttagttgaaggatgcgaaggcctggagaggatctccaaccttccccaagtgagagagctgcgtgtaaatgtctgccccaatttgaggcatgttgaggagttgggtggtttggagcagctattgctggatgaaggtatgcaggagatctctcagctgtgggtccctgggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcatcgagtggctgtgagacccaattaatttagatggcgcaaggtatgtacactaattgcttgggacttttcactggaataaactaatcattgggttgtacattcatgctgcccctctgctcttcagttgtatgcagctaatctagtgtttgatagtttccttagttgttcatgttgtgtgcattgactgattgtttaatgacctatatgattttgtttttttttcattagtgctgcatgtaacaatttcactgtggtcaagattttcataaaatggtggatatccatccaaggacttgaggtagttagggagaatcattttttcacctttggtacacaaactgcataagtaaaggagacaaatgggccaacaaataaatatcatttagttcagatgcagaacagtttacttgcatttagccctcaatgacccaagtgtgttttgtatcgagattatgcatgtatataggagacattgaagggagcacatattatcttgtaaaaacaagtagagacgtcaatttttcatgaaatatttcaactgtgtaatatattaggcatatacaacggtcattttagacttgcaagcgatacaacgcccaattctacagattttcggcctgcagcctgttggcagcaggacattgaacacaaaaggggcagcgccattgaaaataaaaagctgcctaaatgcctttgtatttgttccaattgattaatattttagttatatccctaagaaataaaataagcggggtatattgccctacctacatgcttatgtgtagttcatatgtggctttttcttaaactattttttttcttgtgtctagtaggtttaactccagaaaacatgtttttttgcaaaaactgatcaaccttgtattttattttccttaactaagttattgaagtaccaaattgcttatatatagcgatgcttaatttgtgtgtgcttgtttattttgtaggttgctaatctcgaagatttgggcagtgcaggcactttcttatttatttgttatctttacctagttactgatctatggaagatttaagaaatcc

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CDS seq

atggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagagatcattacagaggaggcaatactaattttaggtgtaaaagaagaactcagaaaactgcaggaaagaatgaaacaaatacagtgctttatcaatgatgctgagcgaaggggcatggaagactcagcggtacacaattggatttctcggctaaaagatgttatgtatgatgccgatgacattatcgatttggctagttttgaaggaaacaagctattaaatggccattcttcttcacctagaaaaacaactgcatgcagtgcgctttcacctctctcttgcttttccaatattcgggttcgccatgagattggtgataaaattagaacgctgaaccgaaaattagctgaaatagaaaaggataaaatatttacaacacttgagaatacacaaccagctgataaaggttcaacatcagaactgagaaaaacatctcacattgttgaacccaaccttgtggggaaagaaatagtgcatgcttgtagaaagttggtgagcctggtggttgcacacaaggaagacaaggcctacaagctcgctattgttggaacagggggaattggaaagacaacactagctcagaaagtattcaatgatcagaaattaaaaggaaccttcaacaaacatgcttggatttgtgtttctcaggactacaccccagtctctgttttgaaacaactacttagaacaatggaggttcaacatgcacaagaagaatcagctggagagctccaaagcaagcttgaattagctattaaagacaagagtttttttcttgtgttggatgatctatggcattccgatgtatggaccaatctactacgaactccattgcatgctgcaacctcaggaataattttgataactactcggcaagatattgtcgctagggaaataggggttgaggaagcacatcgtgttgacctaatgtcaccagctgttggttgggagctactttggaagagcatgaacattcaggacgagaaagaagtgcaaaatctgcgagacatagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttactgctcgagtattggcaagcaaagataaaacagagaacgaatggaaaaggattttagctaaaaacgtttggtccatggctaaactccctaaggaaataagtggtgcactatatctaagttatgatgatttaccactgcatttgaagcaatgttttctttattgtattgtatttcctgaagactggaccttgacacgtgatgagcttatcatgatgtgggttgctgaaggctttgtagaagtgcacaaagatcaattactagaagatacagcagaagaatactactatgagctaataagtaggaatctcctgcaaccagttgacacatattttgatcagagcggatgcaaaatgcatgatctcttaaggcaacttgcttgttatctatcaagggaagaatgtcatattggagatctaaaaccattagtagacaatactatatgtaaactacgacgcatgttagttgtcggagagaaagacacggtggtcatacctttcactggtaaggaggaaattaagttgagaacttttacaactgatcatcagctacagggagttgataacacatttttcatgagattaactcatcttcgtgttttggatctaagtgactcacttgtgcaaacaataccagattatattggaaatttaatccatttacgtatgtttgatcttgatggaaccaacatatcttgtctcccagagtccattggttcccttcaaaaccttctcatattgaacttgaagaggtgtaaatatctgcacttccttcctttggcaacaactcaactgtacaatttgaggcggcttggtcttgccgatacaccaataaaccaagtcccaaaagggataggaagactgaaatttctcaatgatttagaaggatttcctatcggtggtggaagtgacaataccaaaatacaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatctcaaagttctgaaactacactgcactgaacagacagatgaagcatattcagaggaaaatgctagaaacattgaaaagatcttcgagaagctaacacctccacacaacttagaagatctttttgttgggaatttcttttgttgtagattccccacctggcttagtacttcccaattatcttcactgacatatttgaaactcacagattgcaaatcctgcttgcagcttccaccaatcggacagataccaaacttgaaatacttgaaaattaagggagcaagttcaatcaccaagattggacccgaattcgttggctcctgggagggtaatctcagatccacagagacaattgctttccccaagcttgaattgttgatcatcgaggatatgcccaactgggaagagtggtcctttgttgaagaagaagaagaggtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagccaaagggggaagaagccctgtctccaactccaaggtcgtcgtggctgctgccttgtttgacaaggttggaacttttgaactgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggagttctcgataagatacacaagttgcttgaagacggtggaggacctcccattcctctctggttgccttttagttgaaggatgcgaaggcctggagaggatctccaaccttccccaagtgagagagctgcgtgtaaatgtctgccccaatttgaggcatgttgaggagttgggtggtttggagcagctattgctggatgaaggtatgcaggagatctctcagctgtgggtccctgggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcatcgagtggctgtga

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Protein seq

MATILGSLVGSCVNKLQEIITEEAILILGVKEELRKLQERMKQIQCFINDAERRGMEDSAVHNWISRLKDVMYDADDIIDLASFEGNKLLNGHSSSPRKTTACSALSPLSCFSNIRVRHEIGDKIRTLNRKLAEIEKDKIFTTLENTQPADKGSTSELRKTSHIVEPNLVGKEIVHACRKLVSLVVAHKEDKAYKLAIVGTGGIGKTTLAQKVFNDQKLKGTFNKHAWICVSQDYTPVSVLKQLLRTMEVQHAQEESAGELQSKLELAIKDKSFFLVLDDLWHSDVWTNLLRTPLHAATSGIILITTRQDIVAREIGVEEAHRVDLMSPAVGWELLWKSMNIQDEKEVQNLRDIGIEIVQKCGGLPLAIKVTARVLASKDKTENEWKRILAKNVWSMAKLPKEISGALYLSYDDLPLHLKQCFLYCIVFPEDWTLTRDELIMMWVAEGFVEVHKDQLLEDTAEEYYYELISRNLLQPVDTYFDQSGCKMHDLLRQLACYLSREECHIGDLKPLVDNTICKLRRMLVVGEKDTVVIPFTGKEEIKLRTFTTDHQLQGVDNTFFMRLTHLRVLDLSDSLVQTIPDYIGNLIHLRMFDLDGTNISCLPESIGSLQNLLILNLKRCKYLHFLPLATTQLYNLRRLGLADTPINQVPKGIGRLKFLNDLEGFPIGGGSDNTKIQDGWNLEELAHLSQLRCLDMIKLERATPCSSRDPFLLTEKKHLKVLKLHCTEQTDEAYSEENARNIEKIFEKLTPPHNLEDLFVGNFFCCRFPTWLSTSQLSSLTYLKLTDCKSCLQLPPIGQIPNLKYLKIKGASSITKIGPEFVGSWEGNLRSTETIAFPKLELLIIEDMPNWEEWSFVEEEEEVQEEEAAAAAKEGGEDGTAASKPKGEEALSPTPRSSWLLPCLTRLELLNCPKLRALPPQLGQQATNLKEFSIRYTSCLKTVEDLPFLSGCLLVEGCEGLERISNLPQVRELRVNVCPNLRHVEELGGLEQLLLDEGMQEISQLWVPGLQEQHRQLHGDEHELEVIEWL

Function Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_11g0023370 OsGoSa_11g0023370.01 Chr11 29918844 29923558 + NAM
CDS seq

atggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagagatcattacagaggaggcaatactaattttaggtgtaaaagaagaactcagaaaactgcaggaaagaatgaaacaaatacagtgctttatcaatgatgctgagcgaaggggcatggaagactcagcggtacacaattggatttctcggctaaaagatgttatgtatgatgccgatgacattatcgatttggctagttttgaaggaaacaagctattaaatggccattcttcttcacctagaaaaacaactgcatgcagtgcgctttcacctctctcttgcttttccaatattcgggttcgccatgagattggtgataaaattagaacgctgaaccgaaaattagctgaaatagaaaaggataaaatatttacaacacttgagaatacacaaccagctgataaaggttcaacatcagaactgagaaaaacatctcacattgttgaacccaaccttgtggggaaagaaatagtgcatgcttgtagaaagttggtgagcctggtggttgcacacaaggaagacaaggcctacaagctcgctattgttggaacagggggaattggaaagacaacactagctcagaaagtattcaatgatcagaaattaaaaggaaccttcaacaaacatgcttggatttgtgtttctcaggactacaccccagtctctgttttgaaacaactacttagaacaatggaggttcaacatgcacaagaagaatcagctggagagctccaaagcaagcttgaattagctattaaagacaagagtttttttcttgtgttggatgatctatggcattccgatgtatggaccaatctactacgaactccattgcatgctgcaacctcaggaataattttgataactactcggcaagatattgtcgctagggaaataggggttgaggaagcacatcgtgttgacctaatgtcaccagctgttggttgggagctactttggaagagcatgaacattcaggacgagaaagaagtgcaaaatctgcgagacatagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttactgctcgagtattggcaagcaaagataaaacagagaacgaatggaaaaggattttagctaaaaacgtttggtccatggctaaactccctaaggaaataagtggtgcactatatctaagttatgatgatttaccactgcatttgaagcaatgttttctttattgtattgtatttcctgaagactggaccttgacacgtgatgagcttatcatgatgtgggttgctgaaggctttgtagaagtgcacaaagatcaattactagaagatacagcagaagaatactactatgagctaataagtaggaatctcctgcaaccagttgacacatattttgatcagagcggatgcaaaatgcatgatctcttaaggcaacttgcttgttatctatcaagggaagaatgtcatattggagatctaaaaccattagtagacaatactatatgtaaactacgacgcatgttagttgtcggagagaaagacacggtggtcatacctttcactggtaaggaggaaattaagttgagaacttttacaactgatcatcagctacagggagttgataacacatttttcatgagattaactcatcttcgtgttttggatctaagtgactcacttgtgcaaacaataccagattatattggaaatttaatccatttacgtatgtttgatcttgatggaaccaacatatcttgtctcccagagtccattggttcccttcaaaaccttctcatattgaacttgaagaggtgtaaatatctgcacttccttcctttggcaacaactcaactgtacaatttgaggcggcttggtcttgccgatacaccaataaaccaagtcccaaaagggataggaagactgaaatttctcaatgatttagaaggatttcctatcggtggtggaagtgacaataccaaaatacaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatctcaaagttctgaaactacactgcactgaacagacagatgaagcatattcagaggaaaatgctagaaacattgaaaagatcttcgagaagctaacacctccacacaacttagaagatctttttgttgggaatttcttttgttgtagattccccacctggcttagtacttcccaattatcttcactgacatatttgaaactcacagattgcaaatcctgcttgcagcttccaccaatcggacagataccaaacttgaaatacttgaaaattaagggagcaagttcaatcaccaagattggacccgaattcgttggctcctgggagggtaatctcagatccacagagacaattgctttccccaagcttgaattgttgatcatcgaggatatgcccaactgggaagagtggtcctttgttgaagaagaagaagaggtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagccaaagggggaagaagccctgtctccaactccaaggtcgtcgtggctgctgccttgtttgacaaggttggaacttttgaactgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggagttctcgataagatacacaagttgcttgaagacggtggaggacctcccattcctctctggttgccttttagttgaaggatgcgaaggcctggagaggatctccaaccttccccaagtgagagagctgcgtgtaaatgtctgccccaatttgaggcatgttgaggagttgggtggtttggagcagctattgctggatgaaggtatgcaggagatctctcagctgtgggtccctgggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcatcgagtggctgtga

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Protein seq

MATILGSLVGSCVNKLQEIITEEAILILGVKEELRKLQERMKQIQCFINDAERRGMEDSAVHNWISRLKDVMYDADDIIDLASFEGNKLLNGHSSSPRKTTACSALSPLSCFSNIRVRHEIGDKIRTLNRKLAEIEKDKIFTTLENTQPADKGSTSELRKTSHIVEPNLVGKEIVHACRKLVSLVVAHKEDKAYKLAIVGTGGIGKTTLAQKVFNDQKLKGTFNKHAWICVSQDYTPVSVLKQLLRTMEVQHAQEESAGELQSKLELAIKDKSFFLVLDDLWHSDVWTNLLRTPLHAATSGIILITTRQDIVAREIGVEEAHRVDLMSPAVGWELLWKSMNIQDEKEVQNLRDIGIEIVQKCGGLPLAIKVTARVLASKDKTENEWKRILAKNVWSMAKLPKEISGALYLSYDDLPLHLKQCFLYCIVFPEDWTLTRDELIMMWVAEGFVEVHKDQLLEDTAEEYYYELISRNLLQPVDTYFDQSGCKMHDLLRQLACYLSREECHIGDLKPLVDNTICKLRRMLVVGEKDTVVIPFTGKEEIKLRTFTTDHQLQGVDNTFFMRLTHLRVLDLSDSLVQTIPDYIGNLIHLRMFDLDGTNISCLPESIGSLQNLLILNLKRCKYLHFLPLATTQLYNLRRLGLADTPINQVPKGIGRLKFLNDLEGFPIGGGSDNTKIQDGWNLEELAHLSQLRCLDMIKLERATPCSSRDPFLLTEKKHLKVLKLHCTEQTDEAYSEENARNIEKIFEKLTPPHNLEDLFVGNFFCCRFPTWLSTSQLSSLTYLKLTDCKSCLQLPPIGQIPNLKYLKIKGASSITKIGPEFVGSWEGNLRSTETIAFPKLELLIIEDMPNWEEWSFVEEEEEVQEEEAAAAAKEGGEDGTAASKPKGEEALSPTPRSSWLLPCLTRLELLNCPKLRALPPQLGQQATNLKEFSIRYTSCLKTVEDLPFLSGCLLVEGCEGLERISNLPQVRELRVNVCPNLRHVEELGGLEQLLLDEGMQEISQLWVPGLQEQHRQLHGDEHELEVIEWL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 5.354241 22.313065 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0676200 SBH 0.035527 0.072868 0.057889
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g45090 SBH 0.0 0.000000 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0676200 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0023770 SBH 0.136767 3.948730 1.835728
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0023450 SBH 0.000000 0.906361 0.296845
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0023110 SBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0023010 SBH 0.279679 0.317584 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0023710 SBH 0.000000 0.469667 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0420800 SBH 0.2352695 1.2420205 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0024040 SBH 0.631033 1.936608 0.070722
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0431800 RBH 0.0247405 3.3243495 0.4231555
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0023840 SBH 1.203734 0.746390 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0023790 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0023400 RBH 0.000000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0022990 RBH 1.870009 0.0 3.727034
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0023160 SBH 1.000644 37.502644 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G023300 RBH 0.434635 0.913598 2.277780
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0023730 RBH 1.486182 20.188963 5.723283
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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