Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_09g0013270 | OGI:09051940 | 13/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr09:18728027-18732515 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgactcctccccttcctccagcgatggatcctctctcaacagcatgtgttcctgaagcagaagtaatcgatctatagtcggctgaatgcaggagcggggcaacaatggcaaaatcgatgggccatagcagtggatttcatccaaagcagcaggttagtattcgtttatttttgtacggcaagatcaagacacgttgcctaaaattttcttctttgccgcagggtcacaggaaaattagtttgccaccacagtccaaggtatgccacctgaaattgaatacatgtatgcctgtagagagggattaggtgtagttcggttcatgtactctctcagtttcagatgctaatttttccccttttagtgcatatgatggttttttgggtggatgaagttaatgctgttttagcccccacccccataaagaaaaatgtagatggtagtacgtactgaattttcaacggtatatactcattttttctttggagggaaactttttggaatctgctagacgttattaagtattgatttttggtgtggcagggttcttactgaactctctgttaggcaatagtatatactgaatttttatgtggggagctttattctctactttgttggacgatagcatatactgcattttccacatctatactgaatctttccacagtgattcatagactgaactttgatacgcaccagtatttactgaatttttcacagatatactgaatttttctagacgatagcatatactgcatttttccacatatatacagaggcttttccatagtggtttacatactggaccttgttacgaagaagtatatactgcactttTAtatagagaggtatatgctgattttttacatacagtaatattctctaaactttgcatatactgacttttctttcagtgcacatgatttttttttaattaagagggtacacataggtagaatttgctacgcagtattttgtacttcatctttccatacatatatgagtgtatgctgttttttttAaaaaacagaagtatatattgaatttttaaatacactggtccatgtagtattgtctatttatgaaatgaaaaactaattatctgcaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtatcggcaaagcagagttttaaatagacagaagaaagacaacactacctttggtatcaactgcaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgagcaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcaggtcaacctattatcccttgctctcaagatgaattggatgggaagaaacaaatattgtgcgaaatatttgagataccaaacttttcacacctgaaaatatcactcttagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcggcttttgtgctttatgtcacaacgaagcttttggcactgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctaatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagtagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtgtatcatctttctaatggttagcatttaaaactgacttgttaatgcagcatacaatcaacacacgtattgtcattgtgaatcatttttgcaggtaaaatatttgagaaatctccagttccggaaggttgggatcacatgtgttaaaaCATGTCACATTTCTCAGTTTGAGGATGATCAAATTGCTAGGATGATTCAACAAGATGTAGTTAGTAAACATAACCCAGGATTCCCCTTCCCTCGTTATGGGAAACTCCAGGTATGTACGATACCCTGGCTGTAATATGCCTATTTCTGGCTGCAAAATTTAGCTAATTTCCGATATACATGCTGTTCAGTTGATGAAGGAACCAAGAGAAAACAACCCCCATGTGCCAGAGCTATCTCTCCTAAACTTATGCTCCGGTTCGAAGATCCCATCTAGAGCCATTGATGGCGGTAAAAATTTAATAAAATTCCTGGAATCACACTTCTCTTCGTTAGACGTACGTGGAACTGTCGGGTCACAGGTATGTCAACCATCCGTATGCTATGTTACTTGATTGTTTCTTCATTAAGTTGTAATTTTCACATGATCAAGGGATTTTAAACTAACATGTGGTATATATGGataacataaaacaggcatacgaggagttgaaatcttatgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggcagttaagatagcgataagggcagcagtaatgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacaggtaacgttgagtacatacaccattttaaaaataaaactcgtactacttgacactctaacaaattttcttacgctcttcatgtatcagatacccaacaatatgatcacaaaattggaggcttgcagtgtactcctccaaaatctaatggagctccaggttggtgtaccaaaagattaaaaattccaaccaacaatgtgtttactcctgatcatgcgaatgttttcagattcgaaaaaaaaggccaaattcttcagtatcgcctacgtcgggaactcgcatgactaaccaatgttccattatgctaattgaagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccaccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatccaggattgctgacgatctgtattcctatataatgtctatttctgacgatgcatcattagagtaagtatcattcttcttccagaataattaagtatctcaccccaccaaatctgacattcatttttatccatggtttatttcagaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcatttcattaaccaagattttggggtaacattgcatgcaataaacaatatatttctttcatcaataaaaatataaattcaatgattctttctgtattgtcagatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcccagaggtagtatatgatgtttcagaaagccacctggtgagtacaaatttgcagttcgtagattgtagaaactcttgtaaacaatagtacagaagtagtcccactgaaaaacctaaactttgcagatactgattcctgttcacctattcaatcattacgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactcggggaatcacgtttcaccaggcatgacaagataaAGATCATGGTGTCACAGTGTGTAATGGAATGCATGCGTCTTGCATCTCCAGGGTGGAACATGGACATACTTAATTGGGACTTTGAGACAGTTGAAAATATACCAGAGCAGCAGAACGGGTGAGTGACTCCTAAAACAAACGAAATACAACCAACCCAAAGCTTGTACTGACACTACTTTCTCAAAAACATACAGGGATGACTGTGGCTTTTACGTATTCAACTTTATGGTGAACTACGATGGTCGTCGTCTTCTGAACCCTATTACAGAGGTACATAATGCTTTCATATCCGCACACACCGCACTCCACCATAAATATGTCCTCATAAAGCTATAAAGAAAATACTCTAACTTTCGCAGGACCCGTACTACCTCCGGAGGCAATTTTTGATCCACCTTTTGACTCTGCGTGATAACGAGGCAATACTACCAGAATATGTGGTGGACCGTCTTCGACAAATTAAAGACAATTAG
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| CDS seq | atgactcctccccttcctccagcgatggatcctctctcaacagcatgtgttcctgaagcagaatcggctgaatgcaggagcggggcaacaatggcaaaatcgatgggccatagcagtggatttcatccaaagcagcagggtcacaggaaaattagtttgccaccacagtccaaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgagcaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcaggtcaacctattatcccttgctctcaagatgaattggatgggaagaaacaaatattgtgcgaaatatttgagataccaaacttttcacacctgaaaatatcactcttagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcggcttttgtgctttatgtcacaacgaagcttttggcactgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctaatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagtagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtgtatcatctttctaatggtaaaatatttgagaaatctccagttccggaaggttgggatcacatgtgttaaaaCATGTCACATTTCTCAGTTTGAGGATGATCAAATTGCTAGGATGATTCAACAAGATGTAGTTAGTAAACATAACCCAGGATTCCCCTTCCCTCGTTATGGGAAACTCCAGTTGATGAAGGAACCAAGAGAAAACAACCCCCATGTGCCAGAGCTATCTCTCCTAAACTTATGCTCCGGTTCGAAGATCCCATCTAGAGCCATTGATGGCGGTAAAAATTTAATAAAATTCCTGGAATCACACTTCTCTTCGTTAGACGTACGTGGAACTGTCGGGTCACAGgcatacgaggagttgaaatcttatgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggcagttaagatagcgataagggcagcagtaatgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacaaaattggaggcttgcagtgtactcctccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccaccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatccaggattgctgacgatctgtattcctatataatgtctatttctgacgatgcatcattagaaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcatttcattaaccaagattttgggatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcccagaggtagtatatgatgtttcagaaagccacctgatactgattcctgttcacctattcaatcattacgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactcggggaatcacgtttcaccaggcatgacaagataaAGATCATGGTGTCACAGTGTGTAATGGAATGCATGCGTCTTGCATCTCCAGGGTGGAACATGGACATACTTAATTGGGACTTTGAGACAGTTGAAAATATACCAGAGCAGCAGAACGGGGATGACTGTGGCTTTTACGTATTCAACTTTATGGTGAACTACGATGGTCGTCGTCTTCTGAACCCTATTACAGAGGACCCGTACTACCTCCGGAGGCAATTTTTGATCCACCTTTTGACTCTGCGTGATAACGAGGCAATACTACCAGAATATGTGGTGGACCGTCTTCGACAAATTAAAGACAATTAG
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| Protein seq | MTPPLPPAMDPLSTACVPEAESAECRSGATMAKSMGHSSGFHPKQQGHRKISLPPQSKALKVSGTRGSLNKTAARVVSRCQPKCVVNIIKEFDDRKKELIGEVGFDGLLDIKLTKVNRQFGAWLLSKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSGQPIIPCSQDELDGKKQILCEIFEIPNFSHLKISLLERILKKQYGYPMTIDEKRVFMAAFVLYVTTKLLALQSCANFISPRYIMAVSNVDNIKQYNWSQFVVDEVKKAVESMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITCVKTCHISQFEDDQIARMIQQDVVSKHNPGFPFPRYGKLQLMKEPRENNPHVPELSLLNLCSGSKIPSRAIDGGKNLIKFLESHFSSLDVRGTVGSQAYEELKSYVQDGFDRIDEILPTISDFVDISTMQTAIHASNLFKRAFKTNITAAVKIAIRAAVMKVIDTIEDIQGPLHPWGDTTAMGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSPFMSKQCSTERLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRNIQETIKIGSQMDSDSLNLAIRIMFQQEVERFHNTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHFSGPEVVYDVSESHLILIPVHLFNHYVLYVFNMESKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQCVMECMRLASPGWNMDILNWDFETVENIPEQQNGDDCGFYVFNFMVNYDGRRLLNPITEDPYYLRRQFLIHLLTLRDNEAILPEYVVDRLRQIKDN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_09g0013270 | OsGoSa_09g0013270.01 | Chr09 | 18728027 | 18732515 | + | NAM | ||
| CDS seq | atgactcctccccttcctccagcgatggatcctctctcaacagcatgtgttcctgaagcagaatcggctgaatgcaggagcggggcaacaatggcaaaatcgatgggccatagcagtggatttcatccaaagcagcagggtcacaggaaaattagtttgccaccacagtccaaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgagcaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcaggtcaacctattatcccttgctctcaagatgaattggatgggaagaaacaaatattgtgcgaaatatttgagataccaaacttttcacacctgaaaatatcactcttagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcggcttttgtgctttatgtcacaacgaagcttttggcactgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctaatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagtagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtgtatcatctttctaatggtaaaatatttgagaaatctccagttccggaaggttgggatcacatgtgttaaaaCATGTCACATTTCTCAGTTTGAGGATGATCAAATTGCTAGGATGATTCAACAAGATGTAGTTAGTAAACATAACCCAGGATTCCCCTTCCCTCGTTATGGGAAACTCCAGTTGATGAAGGAACCAAGAGAAAACAACCCCCATGTGCCAGAGCTATCTCTCCTAAACTTATGCTCCGGTTCGAAGATCCCATCTAGAGCCATTGATGGCGGTAAAAATTTAATAAAATTCCTGGAATCACACTTCTCTTCGTTAGACGTACGTGGAACTGTCGGGTCACAGgcatacgaggagttgaaatcttatgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggcagttaagatagcgataagggcagcagtaatgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacaaaattggaggcttgcagtgtactcctccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccaccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatccaggattgctgacgatctgtattcctatataatgtctatttctgacgatgcatcattagaaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcatttcattaaccaagattttgggatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcccagaggtagtatatgatgtttcagaaagccacctgatactgattcctgttcacctattcaatcattacgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactcggggaatcacgtttcaccaggcatgacaagataaAGATCATGGTGTCACAGTGTGTAATGGAATGCATGCGTCTTGCATCTCCAGGGTGGAACATGGACATACTTAATTGGGACTTTGAGACAGTTGAAAATATACCAGAGCAGCAGAACGGGGATGACTGTGGCTTTTACGTATTCAACTTTATGGTGAACTACGATGGTCGTCGTCTTCTGAACCCTATTACAGAGGACCCGTACTACCTCCGGAGGCAATTTTTGATCCACCTTTTGACTCTGCGTGATAACGAGGCAATACTACCAGAATATGTGGTGGACCGTCTTCGACAAATTAAAGACAATTAG
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| Protein seq | MTPPLPPAMDPLSTACVPEAESAECRSGATMAKSMGHSSGFHPKQQGHRKISLPPQSKALKVSGTRGSLNKTAARVVSRCQPKCVVNIIKEFDDRKKELIGEVGFDGLLDIKLTKVNRQFGAWLLSKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSGQPIIPCSQDELDGKKQILCEIFEIPNFSHLKISLLERILKKQYGYPMTIDEKRVFMAAFVLYVTTKLLALQSCANFISPRYIMAVSNVDNIKQYNWSQFVVDEVKKAVESMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITCVKTCHISQFEDDQIARMIQQDVVSKHNPGFPFPRYGKLQLMKEPRENNPHVPELSLLNLCSGSKIPSRAIDGGKNLIKFLESHFSSLDVRGTVGSQAYEELKSYVQDGFDRIDEILPTISDFVDISTMQTAIHASNLFKRAFKTNITAAVKIAIRAAVMKVIDTIEDIQGPLHPWGDTTAMGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSPFMSKQCSTERLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRNIQETIKIGSQMDSDSLNLAIRIMFQQEVERFHNTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHFSGPEVVYDVSESHLILIPVHLFNHYVLYVFNMESKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQCVMECMRLASPGWNMDILNWDFETVENIPEQQNGDDCGFYVFNFMVNYDGRRLLNPITEDPYYLRRQFLIHLLTLRDNEAILPEYVVDRLRQIKDN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0307600 | SBH | 1.108489 | 0.972281 | 4.343823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0307600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004570 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013390 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0142200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013370 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013210 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003840 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025400 | SBH | 0.0 | 0.0 | 0.0 |
