Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_09g0001170 | OGI:09005030 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr09:1868648-1875485 | ||||||||
| Gene Symbol | RLCK259, OsRLCK259 | ||||||||||
| DNA seq | atccaagctgactcgactaaaatggcttgatatttctctctcttcttcccctcctccaactactagcactatgctcctcctcaattcttcccttccctttgctaccctatcctacccttcgatctgattcattcgccgccgccgaataccggccgccggcggtagctgctccgacttttcttccttctctcgactccactgggtctggatatagataagagtcttccttgtttctttgctgtgaccagttaaatccaagtcttcatcttccccctcgattcccttttctgcttctcggggttTGGtggtgttctagcaggcagttcgttccccacaaaattctaagctcacccttgctttcttctcccccttgttcttgactagggttttcttttcatttccgtaaggaaaaggagatcacgagttagcaatcttgtgctcgcgttaatttcattcgatttgtggattccgaagatgatatctctgtgaattcgaaagggtcaagaagattgtttatcagtatcgatggcatcttttcctcttttccctgctctcctcctccttctgtgctcttcctccctggctttggactccgtctccgagccaaccctctcatggacctgcggagacgaccaagttgccatcttggacacatccgatggcggccgcaacctgtccgtcaatggggaattggttcaggatcgtgttcttggctgccagaagctccggtcgtactacgtgagccgctgcctccgctgcggccagcagtcagaggcatggaggggcgcctggaagcactactgccgtgaagggagtgaatcaagcaacggtgagtttcatcctgttgattagcttttggtaacgagcttcaatggtgctaagaataatgcccgggttttgaatttgtgtactttcttggtatcatgttgtattgtatagaattaaagttgagagagccaatatagatctgctcatggtaaattattgatatgatgttgtgagagagcacctttatttgtgtactttcttggtatgatgttgtacacacaaagattttctttccttctaaattgtgtgtactcatggtttcatgggaattattgtaactgcagcacaaaatataccaaggaagcttttaaggcagccctcaatgaatgatgcaaaaattgaagatgacccatgtaaaaacatgggaattcatggacataatcaggatgataatgattctttggaagggcaggatcatctactagctgtgccaggtgtgattctcctatgctgtggtctgatgataccgtgctttcatgctgagaaaaaggaagtcagcaggcataacactacatccattcagcgcaatgcaggtgagtccacacatcatgagtaccttgcactatattactgctgaaaaaaataccatttggttgtcacccactcatgctgatggtggactagaaattaaatacacacaattattgatttttcatatcatgacagttgaagtaaaaagtgtgttgaagacttactgatgtcgtaaatgacaagtaatcagagggagtatatagtatttctgttcttcaaactgtttcacggcaagagtcagatgaatagctattttgtaaggattaaaatccacatgtattctgtgcaatttgttgtcatagggaactggttgtctaaagctttctctcatcatgagttaaatacatgctcaaatgctccctgttctagtatgttgagtatgtcagttaaatcttgcgctatcctaaccatcttctgcatggtatagtttgtgatggcacattgggacctttagagctaactctgatggattactagtatgtgtttacaaatttcttacctaccatttacttaccaaactagcaactcccagctagtatgtggatttacagagaaccatagtggatcatctctaccaattcctaacttggtctgtgctacttaggaaggagtggcatctagtgcagaaaaagaacttatataatagtccgtaactaatagaacaaaatctgtttgtttgattaactgtcatcctgtaatttttaactcatgtgctgctattccttccagcctcatttgtgtcgttagctctatacacacagcagaatgaaataattgctacctaagttttaggtgtgcccatctttctgacacccctactagttagcaattaatagggttattgagaactcaatgtttcctagaagaaccaagaaaaagtatttgtaataaaacttctttgcaaagccatttatattttgcacattatgtattttaatatatgttgcagaatatctcaattctggtatgcagctctgactgttaagctgtttgcaagattaatgttctcctactgtactagcaccattttgattcagtgtcaaactcaaaagcattgttgggatcttgtccttaacaaccaaacttcttttttccagtcgaatcgattgcatccttggatgtaagcacgtcatctgagaaggttccaccaactccacaccgaatacccccaagtccatctagattcgcaccatctccacaaattgctcgagttggatctgtgaacttaactgtgcagcagattctgagggctactcagaatttctcaccttcatttaagttaggtgaaggaggatttgggacagtctacagagctgtattgccagatggccaggtggttgcagtaaagagagccaaaaaggtaattccatcagctcactcaatctgtgattttaccttctttttttttttttacctctaatcaatttgttgattcatcatcaatcatgttgattgtaatgtattatcccagtttgatttagattatgaatggattattgcgcagattatctactcgattatagtgataaattaaatattttaagaaataaatttaacaaatggtttgaaataagtggtctaggcaatgcggtagaagaaTTttaaagaaactgtgttttccgaagcgtggagcaaatgatctggtgaataagctgaaaagaacagggccaatgcgtaaagtacactagcggccctcttacagtgtcagtcatgccactaaacttttaaattgcagatttaggttcttaaacttgtttatcataactctctagagagcgatgtgatatgccaacttagagccgacatggtgtgtgggaacacataagctatgtgtgagcttggtatagatgggatatatgcatatattcccttctacactgctcatgtcatcttgtatgtcacgtcagctccaagttagcatgccacataggctcttgaagagggtatgggcacatttggactcatgatggtacgttaaacaactataaaggcctaaatctgcaatttgaaagtgtagggacctggatgacactattcggcaagtttaaggaccactggtacacgttgctccttttatatcactatgttggggttaattagaatatctatgggtgaatacactgctcttaggatttggattaagttactccctcaggtaaaaaatgatgtttgatttttttttcgtggtcctcaaggtgccttgcccataattttatatgagaataaatttatataatattgtaagtgtttacacccaaatttggcacctaggttcaaattaaggaattattgccaagatttggaaaaattgccggtttcctccacagggccggtcagactgccgtatgttggccggtcagaccgttgcttgagggccggtctgaccggcggtgcgtgccgccggtcagaccggctgagtccgagcccgagtctgtttttcgtcgggtctCGggtttccttgctcgggaaggcatgtttcgggtttccattggtttctaccccgagttggacgtggaggacttgtaggaggcaagaccaacccctatctaagggacaaggccggtttgatcgagatatttctcttcctcaaacacaatcgaatcgttcttttatctttactttagccatgttttctactttactctagttttagttcatctttgtcgatttgcgccgtaaatcgtctgccgtcgctcgagagtgcaattacccctttgtaggtttgtcccgtaaaccttccgtttgcccacgagacaggcagttatcctcatatcgatctaaatcagcttagaggctgattttgatctctaaatcggctccgctggccggtttagcttttctttctacaaaacccatcttgatttgtcttttggctagattggggtggttggcgattccatatcaccgcaaggcgtttaggtgtcccgatcgtgattgtcttcttgtcaaaaaaaagttgccaacaataagtttatgatgttatgaaattacatttcaggataaatctatgtaccatttttatgttttcaaacttagtactttattagaagtcgctgatagtcagatcctatccaaaacatcaagtatttatgaccagacgaagtatttggtttactgcctgctaatgggtttgactattttttgtgcacaggatcaattcgcaggtcccagagatgagtttagcaatgaagtagaattgcttgctaagattgaccaccggaatttggtgaggttgctggGAattactgataagggacatgaacgtatcattatcactgagtatgttccaaatggcactctgagggagcatcttgatggtacattgcactttctgatttattctcttcattgccatttgtgtgtttccaaatttccatattaataaatatttctgcattctgcaggccaatatggaagaaccctggattttaatcagcgtctcgaaatcgcaattgatgttgcacatgcactgacttatcttcatctatatgctggtaagccatctctgtttttccttggatcaatattgatgtgatgcgctcatctataccttctatagagatgtgcctgccagcacaactctaatgcccatcggactactaaatcaccagcaccattaagttccttgtgtagtgagcattcctttttggccatctcgagttctctccacagtgcgggtcgatcatcatgccctgtgtagcaaagaagatgacctattctctctccctttatttatttctatcatatgcaatctgaatatgcaaggaaatttatttttatgaattttgcgaagtccatacacattttctaccacatcagatgccaaagtggcaaaccaccttgaagacccctctaaaggagttatttaaatgtttttgcatagatcagaagtttcctgggatggtttatagtttagaggatctattagactttttccttgttaatttggttgcataatttctattttgaaataacactagtgccaattttctatatttgtatttgagtaaatttcagaaagctacaactattttgtcaaaactgtcagtatggtttagctaagcatttcagagaactgcaacaatagcatacgattttatcaaaaagctgtaactttatatctctacaattttggccccacctatcatacacatgacgtacacatgctttatgcaaatcgggcccacatgccatacacacataaaggagaaaatttcatattgatgaaatcatttgctattgctgcggttttatgaaattcacactttttattttgatgaagtttgattttaataatactgtattgctatctgataatttctccgatgtgaacagagaagacaataattcatcgggatgtgaagtcatcaaacatcctgctgacagagagctaccgggccaaggtgtctgactttggatttgcaagaagtggccccagtgacacagaaaagacacacatctcaacaaaagtaaaaggaaccgctggctaccttgatcctgagtatctgagaacataccagttgactcctaagagcgacgtcttctcctttggcatactgcttgtggaaattctctctgctcgccgaccggtagaactgaagcgggctgctgaagagagaataactatcagatgggtatgttcaatggcttcttctttgataccaattctttgcaattaattccagtgatgttacacttgttgcatacttctattactatggaTGtgatcatatgttaccatgaactaaaatgacactgattgttaatacagctctggcaaaatgtgagggtaaaatcatactcgtttttctgatctaaccataactgtcctcagttttttgcacgataatttgaaatatagcggaactgaacctctagctagaatttacctacaaccgtgtttcaagtcaaaactctacttttgtatctgtcctgtccataagtagagaatgtgggcacactttaacttgtatttctgcagacattcaagaaattcaatgaagggaacaggagggagatattggatccgttgttggaggatcctgtggacgatgaggtgctcgaaaggctgctgaacttggcattccagtgtgccgctccgacgcgggaggaccgtccgaccatgaaagaagttggagagcagctgtgggagatcaggaaggagtatggaaagagtgtcaggagggtgtgaacattaaagttagctctttaggcTtttgatcttcagacatgcatattctttgtgccattgtatacgcatgtggtgatatgatgtttctgctgagctgcttccaaatgtgctacttattgaacaatgtacagagaggggtaacaccagccgcactttgtatgtatctttctacttttggaattacatgactggtgttgcgggtttatttctccatggagctactgttcttttagtgagactagcaatactgcatgtacaattcacgttttattctatatatgctgtttc
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| CDS seq | atggcatcttttcctcttttccctgctctcctcctccttctgtgctcttcctccctggctttggactccgtctccgagccaaccctctcatggacctgcggagacgaccaagttgccatcttggacacatccgatggcggccgcaacctgtccgtcaatggggaattggttcaggatcgtgttcttggctgccagaagctccggtcgtactacgtgagccgctgcctccgctgcggccagcagtcagaggcatggaggggcgcctggaagcactactgccgtgaagggagtgaatcaagcaacgcacaaaatataccaaggaagcttttaaggcagccctcaatgaatgatgcaaaaattgaagatgacccatgtaaaaacatgggaattcatggacataatcaggatgataatgattctttggaagggcaggatcatctactagctgtgccaggtgtgattctcctatgctgtggtctgatgataccgtgctttcatgctgagaaaaaggaagtcagcaggcataacactacatccattcagcgcaatgcagtcgaatcgattgcatccttggatgtaagcacgtcatctgagaaggttccaccaactccacaccgaatacccccaagtccatctagattcgcaccatctccacaaattgctcgagttggatctgtgaacttaactgtgcagcagattctgagggctactcagaatttctcaccttcatttaagttaggtgaaggaggatttgggacagtctacagagctgtattgccagatggccaggtggttgcagtaaagagagccaaaaaggtaattccatcagctcactcaatctgtcccagagatgagtttagcaatgaagtagaattgcttgctaagattgaccaccggaatttggtgaggttgctggGAattactgataagggacatgaacgtatcattatcactgagtatgttccaaatggcactctgagggagcatcttgatggccaatatggaagaaccctggattttaatcagcgtctcgaaatcgcaattgatgttgcacatgcactgacttatcttcatctatatgctgagaagacaataattcatcgggatgtgaagtcatcaaacatcctgctgacagagagctaccgggccaaggtgtctgactttggatttgcaagaagtggccccagtgacacagaaaagacacacatctcaacaaaagtaaaaggaaccgctggctaccttgatcctgagtatctgagaacataccagttgactcctaagagcgacgtcttctcctttggcatactgcttgtggaaattctctctgctcgccgaccggtagaactgaagcgggctgctgaagagagaataactatcagatggacattcaagaaattcaatgaagggaacaggagggagatattggatccgttgttggaggatcctgtggacgatgaggtgctcgaaaggctgctgaacttggcattccagtgtgccgctccgacgcgggaggaccgtccgaccatgaaagaagttggagagcagctgtgggagatcaggaaggagtatggaaagagtgtcaggagggtgtga
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| Protein seq | MASFPLFPALLLLLCSSSLALDSVSEPTLSWTCGDDQVAILDTSDGGRNLSVNGELVQDRVLGCQKLRSYYVSRCLRCGQQSEAWRGAWKHYCREGSESSNAQNIPRKLLRQPSMNDAKIEDDPCKNMGIHGHNQDDNDSLEGQDHLLAVPGVILLCCGLMIPCFHAEKKEVSRHNTTSIQRNAVESIASLDVSTSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLTVQQILRATQNFSPSFKLGEGGFGTVYRAVLPDGQVVAVKRAKKVIPSAHSICPRDEFSNEVELLAKIDHRNLVRLLGITDKGHERIIITEYVPNGTLREHLDGQYGRTLDFNQRLEIAIDVAHALTYLHLYAEKTIIHRDVKSSNILLTESYRAKVSDFGFARSGPSDTEKTHISTKVKGTAGYLDPEYLRTYQLTPKSDVFSFGILLVEILSARRPVELKRAAEERITIRWTFKKFNEGNRREILDPLLEDPVDDEVLERLLNLAFQCAAPTREDRPTMKEVGEQLWEIRKEYGKSVRRV |
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| Function | Calmodulin-binding receptor-like cytoplasmic kinase 3 [UniProtKB/Swiss-Prot:Q9ASQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_09g0001170 | OsGoSa_09g0001170.01 | Chr09 | 1868648 | 1875485 | + | NAM | ||
| CDS seq | atggcatcttttcctcttttccctgctctcctcctccttctgtgctcttcctccctggctttggactccgtctccgagccaaccctctcatggacctgcggagacgaccaagttgccatcttggacacatccgatggcggccgcaacctgtccgtcaatggggaattggttcaggatcgtgttcttggctgccagaagctccggtcgtactacgtgagccgctgcctccgctgcggccagcagtcagaggcatggaggggcgcctggaagcactactgccgtgaagggagtgaatcaagcaacgcacaaaatataccaaggaagcttttaaggcagccctcaatgaatgatgcaaaaattgaagatgacccatgtaaaaacatgggaattcatggacataatcaggatgataatgattctttggaagggcaggatcatctactagctgtgccaggtgtgattctcctatgctgtggtctgatgataccgtgctttcatgctgagaaaaaggaagtcagcaggcataacactacatccattcagcgcaatgcagtcgaatcgattgcatccttggatgtaagcacgtcatctgagaaggttccaccaactccacaccgaatacccccaagtccatctagattcgcaccatctccacaaattgctcgagttggatctgtgaacttaactgtgcagcagattctgagggctactcagaatttctcaccttcatttaagttaggtgaaggaggatttgggacagtctacagagctgtattgccagatggccaggtggttgcagtaaagagagccaaaaaggtaattccatcagctcactcaatctgtcccagagatgagtttagcaatgaagtagaattgcttgctaagattgaccaccggaatttggtgaggttgctggGAattactgataagggacatgaacgtatcattatcactgagtatgttccaaatggcactctgagggagcatcttgatggccaatatggaagaaccctggattttaatcagcgtctcgaaatcgcaattgatgttgcacatgcactgacttatcttcatctatatgctgagaagacaataattcatcgggatgtgaagtcatcaaacatcctgctgacagagagctaccgggccaaggtgtctgactttggatttgcaagaagtggccccagtgacacagaaaagacacacatctcaacaaaagtaaaaggaaccgctggctaccttgatcctgagtatctgagaacataccagttgactcctaagagcgacgtcttctcctttggcatactgcttgtggaaattctctctgctcgccgaccggtagaactgaagcgggctgctgaagagagaataactatcagatggacattcaagaaattcaatgaagggaacaggagggagatattggatccgttgttggaggatcctgtggacgatgaggtgctcgaaaggctgctgaacttggcattccagtgtgccgctccgacgcgggaggaccgtccgaccatgaaagaagttggagagcagctgtgggagatcaggaaggagtatggaaagagtgtcaggagggtgtga
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| Protein seq | MASFPLFPALLLLLCSSSLALDSVSEPTLSWTCGDDQVAILDTSDGGRNLSVNGELVQDRVLGCQKLRSYYVSRCLRCGQQSEAWRGAWKHYCREGSESSNAQNIPRKLLRQPSMNDAKIEDDPCKNMGIHGHNQDDNDSLEGQDHLLAVPGVILLCCGLMIPCFHAEKKEVSRHNTTSIQRNAVESIASLDVSTSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLTVQQILRATQNFSPSFKLGEGGFGTVYRAVLPDGQVVAVKRAKKVIPSAHSICPRDEFSNEVELLAKIDHRNLVRLLGITDKGHERIIITEYVPNGTLREHLDGQYGRTLDFNQRLEIAIDVAHALTYLHLYAEKTIIHRDVKSSNILLTESYRAKVSDFGFARSGPSDTEKTHISTKVKGTAGYLDPEYLRTYQLTPKSDVFSFGILLVEILSARRPVELKRAAEERITIRWTFKKFNEGNRREILDPLLEDPVDDEVLERLLNLAFQCAAPTREDRPTMKEVGEQLWEIRKEYGKSVRRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.324747 | 23.013758 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0123300 | RBH | 7.716194 | 6.454807 | 5.954856 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g03620 | RBH | 5.117244 | 4.217218 | 1.502485 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0123300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001030 | RBH | 1.871329 | 32.279766 | 14.615758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001010 | RBH | 0.933918 | 10.647852 | 3.973910 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001060 | RBH | 5.606057 | 28.666597 | 16.302794 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000930 | RBH | 0.863556 | 1.148813 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001130 | RBH | 19.214983 | 34.920395 | 26.238838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0025500 | RBH | 20.5827615 | 24.1510445 | 18.571479 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001130 | RBH | 1.088076 | 2.639260 | 2.088837 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0035100 | RBH | 17.1967445 | 23.658349 | 16.9801755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001070 | RBH | 0.808117 | 0.420532 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001050 | RBH | 2.330314 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001080 | RBH | 1.774292 | 0.0 | 1.694348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001090 | RBH | 1.721682 | 18.619204 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001140 | RBH | 2.219581 | 6.726701 | 7.124458 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0001100 | RBH | 4.448780 | 36.389194 | 10.190804 |
