Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0002720 | OGI:08006500 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:2273231-2280459 | ||||||||
| Gene Symbol | OsDegp11, DEGP11, OsDeg-like 2 | ||||||||||
| DNA seq | gcagagcatataggcagatagccttttgtgattaaaagtgctaattcttcgcggcaaattgatctcccagatttcattattcagaaaacgtggaagattgattggacaacaaaaataaatatacaggtgaagaacaataccaagtacatacttcttacgccgcccatttggagatgaaagtaagtgaccatgcacttgttcagatctcaccaaaattaccaatccacttgatcccggccgggcgtcgccgtcgggatcaccgtcttgatggtctccttccaaccttttggtgttcttcacaggttgcacctgtttagtcttcgagtgtgatcaacggcttcgtctttaatttcaacctaaccaagtgctaaggaggttaattaattatccttttattaccaaatgctgtatcattatatcttgacaagattgtgctctttgtagaaaagtaggagctatacacaactatatatcgtgtttacatttttcctttttgtaaattattgttgtgtttaatgttgctatactttttttcaaactgaaattatgcaagtactgtactatgcaaaaagagacataaatgcatatcactatacacaccatgcacatgacatatatAaaaaattgtcatgaacttttgtaagtccatatcaagaaaaagaactccctagtttgtgtcaaaattgttcttttttAaaaaaaaaatgttctcatctttagctcaacaagactaagctacagttcaaatacgagggctttaaaaaaaaaacacaaatagatgtcaggtgatgaggaactgttcgagaaattctgtatctagaaaggaaccttttgcaaagtagcaaaccatgcgttaatctctcccagggttaaaagaaaccaatcacaagcacttcggattcatgctacaaaaactttggattattgaagcagctaataagctgacacattcatagtcagctgacatggggtcctccaaacatctactcccttcgtttcacaatacaagtcattctagcattttccacattcatatttatattaataaatctagacatatatctatttagattcatcaacatcaatataaatatggtgaatgctaaaatgacttacattgtgaaacggaggaagtactgaatactgatgatatagtagcagcacgtcgttgagggcacattcgtgggcccacgcgactgtaatgtgttgattgtgtgtgtctgagttcatcaaaaacaaagtttagattcagtttatggcgctaatctgaccttgctatatatacggaggggcatggttttctgttaagagcgtaagaggcgcagtaacactatctttacaaaatctcatccaaaactatatcagcacaaccatttagaggaatgaggttgcatcgctggtaagacgtgccaaattgtcccaaaagcacaatgaggttgccagattatccaaaaggcacaagtagacatccctccccttggtcagtcatattactctaggcaacttcaatcccttgcagcacctcttcaactctagttcacctacattccaaaacatttgtcagttccacaaacaatttgattatatcctaatcaaatcgttgtctaattgagtcatccagttagctatatgccaaaaataaatgtatccaaattgaatggtttgattgtcatcaggttagctatgacagtgttgaactttgaattctaaatctggctgcatgggctgataatgaaactaacttatttcaaactatatgaagccacaccacaaaacattcaaaaATatatataaatatttttggggttcctatgatacaactaactgcaatggttgaggataaaattagggataacaaatacaaaagtaaggaacaatagctcaactagttacctgcttagaagcatcagtgaactgtacagggaaagtaatactttccctatatgagtcgaagagattatgaacttcaaccttcatagacagaaagaacaaaatgggtgttcaacgttttcttttacctttcaattctaaagaaccaagtaacatttttttttttttgtttttgaacatatagctttttaaggtaccttcagatcgactgtcaaatgcatccctttcaggtatccccaaccaagagaaaggaggtggtcttctaactgctcacagagtgtaattaaatacttaaatatatcccatatactatatttatagacatagtaaagtgattaataaagactaagagttctactcacctgggataaagtagaacaatcaatatcctgaaaatcaatcacgtcccctcgtctaataccaagcttttcagcagtagaatcaacgagcacctatgagaccaaaagagtcaaatactacgagaaaatgaatcaactatcacctatgagaccaaatgagtcaaatactaggagaaaaatatatgtacagaatagtaatatacctgactcacaatgaaaccactggtgatattatagtcacgacagagttcctcctgaatggagacatccagtagttccactgacttcaattgcatgccaagcaaggggcgagcaacacggctaaaaataagttggatttagagcatcagttccaaaagtaaactatacagtattttttttggctaagccacaagggctccataaggcaacagtaccatgtctttcagtttacaaggcacatataaggatgtattgactgttccatgctcctatcagtttatatttcagtgcaggaatggggtaattgcctccataccatcaaatttgttgcatattggcaatatatgtaccatccaatccattaccatttatcctcaatataatttattataaacatgttaagaataatgaatcactcacccattagagcaagttttatagtagaggtggctatcacctctaatttcatacatgtcatacaccaataaattaagaggtactccctttgtttcataatgtaagtcattctagcatttcccacattcatattgatgttaatggatctagacatatatatctatctagattcatcttggggcttgtgtttggatgcccatagtacttgctcttatggctagaacacaaaataactaaaatagaaacataaatgcccctagcagccaaagtttgctataattcaaacaccaccaaaatcgcataatcaatgtgctcctgtgccgtgagcagcgagccagcaatcaatatagggcactgagcagcaatgtgacaacagcagcggctgttggggctgcaaagctaggagctgcaatggcagtaaagttggccatcaggtgacaagggctcaggatgttttagttttgcaactgtagccaattcatcacttgacatttagcaaatggggattacagtacttcttgagtcttgaggagcagaaatcatgatgaacatggatggcggtggtataagggtaacagggaataaactagatggtgtttcagctagcataaatgaatgggccatattttggcatgtggaacaaattggcctttatagggataattctctctaacagatatgatgcataaattatattattactagtattgtatgaggtcactggtacattttgtatgctattttttccttatgttcgacttcagcaataaaaagctttaaagtatgttgcactgaacctgaggtttgagatttaaattgcccttcctaaacgtgcaacttatcccatatttgaacattcacattatatccagaatctagatgatgggcccaacttgtatgatctaacaaacaaaggataacataaaaaaacaccagacagctttcctatcaacctagtggtggtggtgtcacccccacctcgataagttgtgcacacactttaaattcaatagaacattaaatacaacgataaatttttaaacacataactggcaaataaaataaacttctgtgaacaagagacaaaagatacatcaacaactctaccataagtgagataactgcctaactgatcacagttcctaataacaacaaatacctacttttcaagataaaaattactatgtttcagcactcaagataagtggataaattcaataaataagggaaagtttgtttttgctactcttagaagtcacagtttcaagattgccactcttaaaacttgatttatgctttcgctacttctattagcaatgcatttcaatttttgccacaccgtcaacttgagtcactgaaattgcactgcaacggcgctggtttttgtggttgtcatcagaacccaagcccttctatccaaccgtgctgatgagcgacgacatactctgctggaaccatccccacacctcaagataaaaatgcattcatgaatagcatgtcattgtaatgaactaatgatcaatgagcaagcaggaacacgttcagacagttgtcatgagtagattcaagtcacaagagggaccataaacaccatcgaatactttctagcgcttgaaacagtgtacttagctgataggatgttgacagagtggcaaaatatgaaaatgcactgttaacaataatgactgcctataaattttacatttagataacaacaggtaagagaagggaacaaacctaaactgatcccacatctccatgcaagtcatgattgtcttgatagagataaaaccggacccggattttctacaaatgcaatcccaatcatattgccaccatggtcaaccaccggccctcctgaaccaccctacattaaagagagactccaaaattaacgagaacataagaatgcattaaaatgccagcataataatgcatcaatacctcaggaatatcacagctcagaaacatattgtggttcctcaataacacagggtaatctgtccatgaaattgttccatggctaaccattaaagacatgttttcacccctacccaatgcaaatatgacctgaccgtagtttgtgcccgatccaaaagaagggacctccaacttgtagtctcccatgacttccaaaagagcaataccatagtgcacattgtagaacaacaaccttccttctgttgttgtcttatttggcatactgacggatagctggaaagttgagacttgatcaactatagttaacttgtatacaaaggactaataggcgaaaaggaaatcataagaactaaaatagataagaaccatagaaacattaagtgagttaattaagataactgaagaatgagcaaaaaatttagaaaaaaaatcaacatcacagagaataacaaggaaaaggcatgcaaggtttaatgtccatattctgtaacagctgcacatctctaaaagaaaagacaaccaggcgcataataagatcttaaaacagtgctaagccatggtgagacaaacatgcattggtgttacttacctttcacaagaaccaatactaaaaatatataaatgcgagctgaaagtgctaccatgcaaagctcattgacttgacaaggaaattgaactccttatgctacagttatcaagggatggcttgggtgcatgaaattcatggaaataaactgtaaacaatttagaaagggctcacgacaaggtaattaaattgactcttttaagaagtttcgagggtgaacgggtttttcttcattgtacctttgtggcataaagagaattaacatgctggtgaaggagtttgtagaattgatatgttaacggaagaagttagtgtgtgtctaaactcatagagatctgttataagatatttcccattgctagaaacttgctgtctaatgggttgcttgacattacataattttggtttgtggagcaaaagcaaagggctagaatttctggtgtgggataatattaagtggaaagaggcctatggaatgctcggtggccaagtggacaatgcaacctgttctttttcttttctttttctttgttttttttttttttgccaagcagtctcaagtttgtattaaaatacctcctgatttctattcaatttcaaaaattcagcaagttgagctacaatgagcaattacttccctaattaacggcaacgtaaattgaaacttacatgataaacaaagaggaatcagataacaggcagcaattggtatctcaaaaagttaaaacgaattgcagacgacatgatcaactacagttatgagatatgaagcatttaacatagactacacacagggcatatatatataattcaaagaagagagttaagtaccttgagtgctgggttatgcaattcaccattgaagtcacaaacaacagaagcagcagtgaggatcttggcacgtttgttagccccatcccaaccgattacgacgccagtgcaccGggaaatcaatccacccccatctgcaaagtcatcgaatgccatttagctagctaggaggaatcgatcatatgaatgaataataacgaattgagccttagataattgtgttactaccaggcattgtggatgaaacactgacaacggagcgagccacacgcagcaccatggccttgtcttgtgatgtgaccacggcatctgcagtgatgggatccatgggcgaatccctgagagtggggatatctttacattgagctaacgaaaagaagaatggcggtcagtggcatggatcaagcaggagggataggaaacaaattatagaaagaaggaaagaaatattgaattgaacctttcttggagagtttggcgatccggcggcgctccttggcccactcaagaacggaatccaaatattttctgtcaaggacgggatccaaatattgtctgctggtaggacgagtccccggtggtaaggtgggataaggcgggtagcgaagagggagcggccgggaggccaaggtcgtactaccggcggtggtcatcttcttcggaaccggacctgccgccgctgctgatgacgccgctgactcttctgtcctctttctcttcttcggatccagtgccgtgcccccgccgctagctctagcgcgctcagtagtatccctcgctctagatcgagtaacacttccggcggtgggagccgtagccggagcgggattctttttcgatgtgtggctttctccaccctcgccggtggaaggggatggcgccacccccttcgacgacctcagtttgggtgggatcgccgattcgccgctcgagttgcggcggaggcggcggcggcggcagcggcggcggaggcggagctaggtttcttttCtttttttttacac
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| CDS seq | atgaccaccgccggtagtacgaccttggcctcccggccgctccctcttcgctacccgccttatcccaccttaccaccggggactcgtcctaccagcagacaatatttggatcccgtccttgacagaaaatatttggattccgttcttgagtgggccaaggagcgccgccggatcgccaaactctccaagaaagatatccccactctcagggattcgcccatggatcccatcactgcagatgccgtggtcacatcacaagacaaggccatggtgctgcgtgtggctcgctccgttgtcagtgtttcatccacaatgcctgatgggggtggattgatttccCggtgcactggcgtcgtaatcggttgggatggggctaacaaacgtgccaagatcctcactgctgcttctgttgtttgtgacttcaatggtgaattgcataacccagcactcaagctatccgtcagtatgccaaataagacaacaacagaaggaaggttgttgttctacaatgtgcactatggtattgctcttttggaagtcatgggagactacaagttggaggtcccttcttttggatcgggcacaaactacggtcaggtcatatttgcattgggtaggggtgaaaacatgtctttaatggttagccatggaacaatttcatggacagattaccctgtgttattgaggaaccacaatatgtttctgagctgtgatattcctgagggtggttcaggagggccggtggttgaccatggtggcaatatgattgggattgcatttgtagaaaatccgggtccgacaatcatgacttgcatggagatgtgggatcagtttagccgtgttgctcgccccttgcttggcatgcaattgaagtcagtggaactactggatgtctccattcaggaggaactctgtcgtgactataatatcaccagtggtttcattgtgagtcaggtgctcgttgattctactgctgaaaagcttggtattagacgaggggacgtgattgattttcaggatattgattgttctactttatcccagttagaagaccacctcctttctcttggttggggatacctgaaagggatgcatttgacagtcgatctgaaggttgaagttcataatctcttcgactcatatagggaaagtattactttccctgtacagttcactgatgcttctaagcaggttgaaattaaagacgaagccgttgatcacactcgaagactaaacaggtgcaacctgtga
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| Protein seq | MTTAGSTTLASRPLPLRYPPYPTLPPGTRPTSRQYLDPVLDRKYLDSVLEWAKERRRIAKLSKKDIPTLRDSPMDPITADAVVTSQDKAMVLRVARSVVSVSSTMPDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFNGELHNPALKLSVSMPNKTTTEGRLLFYNVHYGIALLEVMGDYKLEVPSFGSGTNYGQVIFALGRGENMSLMVSHGTISWTDYPVLLRNHNMFLSCDIPEGGSGGPVVDHGGNMIGIAFVENPGPTIMTCMEMWDQFSRVARPLLGMQLKSVELLDVSIQEELCRDYNITSGFIVSQVLVDSTAEKLGIRRGDVIDFQDIDCSTLSQLEDHLLSLGWGYLKGMHLTVDLKVEVHNLFDSYRESITFPVQFTDASKQVEIKDEAVDHTRRLNRCNL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0002720 | OsGoSa_08g0002720.01 | Chr08 | 2273305 | 2280459 | - | NAM | ||
| CDS seq | atgaccaccgccggtagtacgaccttggcctcccggccgctccctcttcgctacccgccttatcccaccttaccaccggggactcgtcctaccagcagacaatatttggatcccgtccttgacagaaaatatttggattccgttcttgagtgggccaaggagcgccgccggatcgccaaactctccaagaaagatatccccactctcagggattcgcccatggatcccatcactgcagatgccgtggtcacatcacaagacaaggccatggtgctgcgtgtggctcgctccgttgtcagtgtttcatccacaatgcctgatgggggtggattgatttccCggtgcactggcgtcgtaatcggttgggatggggctaacaaacgtgccaagatcctcactgctgcttctgttgtttgtgacttcaatggtgaattgcataacccagcactcaagctatccgtcagtatgccaaataagacaacaacagaaggaaggttgttgttctacaatgtgcactatggtattgctcttttggaagtcatgggagactacaagttggaggtcccttcttttggatcgggcacaaactacggtcaggtcatatttgcattgggtaggggtgaaaacatgtctttaatggttagccatggaacaatttcatggacagattaccctgtgttattgaggaaccacaatatgtttctgagctgtgatattcctgagggtggttcaggagggccggtggttgaccatggtggcaatatgattgggattgcatttgtagaaaatccgggtccgacaatcatgacttgcatggagatgtgggatcagtttagccgtgttgctcgccccttgcttggcatgcaattgaagtcagtggaactactggatgtctccattcaggaggaactctgtcgtgactataatatcaccagtggtttcattgtgagtcaggtgctcgttgattctactgctgaaaagcttggtattagacgaggggacgtgattgattttcaggatattgattgttctactttatcccagttagaagaccacctcctttctcttggttggggatacctgaaagggatgcatttgacagtcgatctgaaggttgaagttcataatctcttcgactcatatagggaaagtattactttccctgtacagttcactgatgcttctaagcaggttgaaattaaagacgaagccgttgatcacactcgaagactaaacaggtgcaacctgtga
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| Protein seq | MTTAGSTTLASRPLPLRYPPYPTLPPGTRPTSRQYLDPVLDRKYLDSVLEWAKERRRIAKLSKKDIPTLRDSPMDPITADAVVTSQDKAMVLRVARSVVSVSSTMPDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFNGELHNPALKLSVSMPNKTTTEGRLLFYNVHYGIALLEVMGDYKLEVPSFGSGTNYGQVIFALGRGENMSLMVSHGTISWTDYPVLLRNHNMFLSCDIPEGGSGGPVVDHGGNMIGIAFVENPGPTIMTCMEMWDQFSRVARPLLGMQLKSVELLDVSIQEELCRDYNITSGFIVSQVLVDSTAEKLGIRRGDVIDFQDIDCSTLSQLEDHLLSLGWGYLKGMHLTVDLKVEVHNLFDSYRESITFPVQFTDASKQVEIKDEAVDHTRRLNRCNL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0002720 | OsGoSa_08g0002720.02 | Chr08 | 2273231 | 2277857 | - | IsoSeq | ||
| CDS seq | atgaactcagacacacacaatcaacacattacagtcgcgtgggcccacgaatgtgccctcaacgacgtgctgctactatatcatcagtattcagtacttcctccgtttcacaatgttgaaattaaagacgaagccgttgatcacactcgaagactaaacaggtgcaac |
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| Protein seq | MNSDTHNQHITVAWAHECALNDVLLLYHQYSVLPPFHNVEIKDEAVDHTRRLNRCN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr08 | 2273586 | 2275124 | - | OsGoSa_08g0002720.02 | OsGoSa_08g0002720.01,OsGoSa_08g0002720.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.013127 | 26.576918 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0144400 | RBH | 4.491756 | 5.134789 | 7.379937 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04920 | RBH | 2.923445 | 3.783135 | 1.747743 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0144400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003040 | RBH | 0.806269 | 17.166710 | 6.708819 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003120 | RBH | 0.174686 | 4.642792 | 4.593442 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003090 | RBH | 2.827682 | 5.788842 | 17.358896 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003080 | RBH | 0.375487 | 0.588212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002870 | RBH | 9.745584 | 23.033821 | 28.667522 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0037300 | RBH | 6.3937115 | 19.448796 | 13.4231505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002750 | RBH | 0.700337 | 0.558438 | 2.445552 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0042200 | RBH | 7.7332645 | 15.364153 | 22.5123485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002880 | RBH | 0.333406 | 0.457194 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002910 | RBH | 1.330068 | 14.809369 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002860 | RBH | 2.839147 | 5.154099 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002920 | RBH | 1.328328 | 1.888158 | 2.134171 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002840 | RBH | 0.259912 | 8.689510 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002870 | RBH | 0.479854 | 6.192564 | 2.351467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002730 | RBH | 1.610551 | 7.524541 | 9.967426 |
