Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_07g0004990 | OGI:07012560 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr07:4134791-4139793 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacttcttgaatcatatcacttcaactgcaagatgatattccagcttcgattagtataaatgacaatcttgttcaacttcttacaactgtatatatggcgaagtattacacacatacggttacagtcaagagaaaaggaaggagaaaatctgggatatatataggggctggcagctatagaaagcccaaatcatatcagccatgcattatctcttatcacaggaagattgctggttattaatcctaactctacttcatacatagctttagattataaagatgtagggaacaacaaacaaagctactcaaatcagctaaagtactaatcaaactttcaaactttaatcagttgaaaaagaacgcatatgcttccttcaaatcagctgcagcaccagcagaatcagcagacgaaatggacgatatggtggacgtcagccggacccttctcctctcggattcgccgagcccttcccgggccatgagcagccaggcgaaggtgatgagctcccctccgctggccagctccgccgcgtgcaccttaccattggacctgccggcggcgaagatgaggaaccgcagccacattgctgccatctcctccactgcaccccagcttggttggacatcctcttctagtatcatcttgtacatttcctccattgttccttgccttgacacaccatccttattctgctgtataatgttgtatagctcatccagggtcatcttgcttccttgttgtgtcctagacagttcctctctcgatttcgcaaactcaaccacggtggcttcggagctggcattgagcggaagcatggaagggtggttgacaaagaggtacatcatgtaGttggacagttttcggcacacctccaccatatcatctgcatctccccctccttcgtctcccgctgccgccgcttctactgcattcaaatatacttgagtgaatatgtgcatcaccacaatagcacatcccacatctgcgacaaaacagacccgtatctttttcagcaatgggccaagatgctgccattgttgttgctcggagacttcatcgctcaagctactaatcccctttacgacaaactccatcgtcttttcatcggcctccacatgctcagtgtccaacgtcttgctcagccagaacaaatcttcttttccaacaccgactaaactcgacaatcttctcactagagccaccactttctggttgtatgatcttggctggtctccaccagaaacccagttcagcaagttgtactgtccgatggaattcgaccaccgtggccttttctctggccagccaatatcactggaaaaaaggaaccaggacaagctagccagccggtcgcatttctgagccttcaaccacgcccaagtccatggagacattatgaagataaacactgcagaaagatcaaggaaaaagcctccgataaacagcgaataggtgatcgcaacatcaactccgttgtacctccgtttgtcacatgtaaggaacagtgcaaaagcaaggagggaacatgcgtgagaggtgcatcggagaatcatgcctatccttgttctcagcacaagagcctttgtgtagaggtcatcgtacatgattgcaagctcaagctccaccaccttgagcatttttttggttccctgtaccgtgtctcgagcaataacaactggggaattagattctggaccattaacaaatgggttacgcgctgcaaagacattgtggacatttagcattgaacatagagcatccaaaactaccttagaatagccatgatccgaatcgtttaattccggaaaccgtttcttgtagtgatctccagttgagctctcgagacttttaaaccttccatacttgagagacagtgtcctttctccatacttggtaactccggcaatgaacacaaggacacctgaaactagaagctctgcactgtgccttgctggcgatttccagaaaacatatgcagctaggactacttgcaccaccaagttcaagagatgcctcagccacaagttgttgtctgccattgaaaatgcggtgatgctgtcctgcccaccaagatggatgaggaggaatgatgcccaaaagaaagctagtggctgggttccccctgacatttgcctctgaatatcatcgtgtcgtgagaggtaaccaagagcataaactgctgtgaagtctgctcccaaataagctgtccagatagaaaccctgaggaacacattggtgttgcgcctccgaagactgccggtgaaaaagaggaacatttggagtgtgaagctgaggagcacaagcagctggatttcccgctgatgataaagtttcataaaatccttcattattataaatttaagagcacctgtgttggatattccagtaatcatttagtacaagttttaaaaagaagattacattttcgacgtactacaacccagaaacgtaaagaaaaagaagtcagagtaaattctttaaaattctaggtatatattatgatctaaattgcataaatccagaagttttggcacgtgacatataacactggatatattatagtcctacagtttcatataaccgcactgtttattaattttacttgctactattgtgtcaaaacaaaaacaaaaaaaaaatgcttaacttaatggctatcaaactttttatacaatagatcaaataattcttcatatatttcagaattaatttagaacccacaaatatggtcaatcaaataacaatttattaacagcatgattttatgaaactataaaaccatagcaccaagaataatcatatgctccgtgctaaaattccaTtttttttttttgcaaacagcaacaaatcgattcacaatattaaagctcgatgcatgtatgtacaacaagaaaatagtaaataccccggttgtttgtgacagtttttgcccagtgtaattaattagttatacctataatatatcctatctacaattccctccgtttcgttccgttccacgatataagacgtttttttatctaaatatactagcatacatatgaatttatacacatctataaacatatatatggatccatatatgaatctataaaatcccaaaacgtcctataatgtgaaaaagagaaaaatacatctgtttaaaaatatagcaatcgaaagagatacaacctaatactacgaatctggacagatatattggtaccatgattgtattcccatctaatcctagatttactatattttgcaactaagagaatactattctaaactcattTCtctctctctcctatgtcggccggctttgctgccatggaaaggaaggaggagaccgacctctgcacgaccggcgtctcccgccaggaaccccagccaccggacgacggatcagccgtacgtcgccgtgtccaggaggtagcagatcgagtggaggaGggacacgggaggaaggatcggatcgagtggacgacagagagacttgttgttgacgaggaagtgatcagatcgtcagggacgaggaaaactctgtgaaagaccgtagctaggctttgccgattttttctcaagtcaattctactatggagtttggacCAcatgacactcacagcctagctaccacGgaaaccccaaaatcctactcactccctaggatttttttttaaagaaacatGgtagtacactcgtccctataaacacacgtacactttattcatatttataacaattaatgtattgaagtttgttaattaaaattgaagtttaaatataataaaatgtactaaagtgaaggacaaatgcaccctagtttgctgaagtgaaagatatttccatcttatctgttttatatttatgtgtgtaaaatggattaaaaatggagtcttctgggacggagggagtctatacctaaactttgcaacttttcgagctatcaacttgctctctccattcgaaattacatgtacttacgggatttttaataacaaattaaaattaagaagtaaattaaatatggatagtttagttggttgatacgaagaagagaacgcggaaaaattaaataaaagatagttgtgattgattgagataatagtatagatactAGagagtctatatttttacaataaaatttaaaagtatgGAgagtatcaagcatatatcacaagtactagatggagagcgggaagaggccagccggttgcttccctggccacgtgatataatgatataacatacggtaaccttttcagtttttagaaaccacggtaatcctcacgataacagcatggttcacgataaccacacagtttctgcacatgataaccaccttactgtGggttaaaggtaatctcaccaagacggtttggcgaatcctgatactcaccaggaaattctattgtgtagtgtcatccaattgtgcaaccatggtgatagtataggtggtttcaaagtgaggttgTttttttaataaagatgcagtacccaccatgagttggtacggttaTtaatcattggctgtattagttttgcttttcatagggctgcatatgactagatactttaaaaaaagtacaatggcactccaaatactatagcgataagcattccacgttggattgcatgctgagctgaaaagagattagtgaagagagaaggcaaacaagtgactaagggtatgtttagcagagcttcaacttcgaagtttatcttcaagagctcgatttgaagtgaagttgtagagcagtctaaactgagcttcaccttcttaatttattttatgagagcattctagtcagtttcactctagctccctttttgggtggagttgaaactgtttggttgggccttagctccagaagacatgtagttggagctagacatgtagttggagctagagctctgccaaacataccctaaatagtcgctcgctccatgcgcactccaagagcgttgtatagtagctttcctatcgcttactcgtagccgatgccgacagcacccccat
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| CDS seq | atgggggtgctgtcggcatcggctacgacgcgtaacccatttgttaatggtccagaatctaattccccagttgttattgctcgagacacggtacagggaaccaaaaaaatgctcaaggtggtggagcttgagcttgcaatcatgtacgatgacctctacacaaaggctcttgtgctgagaacaaggataggcatgattctccgatgcacctctcacgcatgttccctccttgcttttgcactgttccttacatgtgacaaacggaggtacaacggagttgatgttgcgatcacctattcgctgtttatcggaggctttttccttgatctttctgcagtgtttatcttcataatgtctccatggacttgggcgtggttgaaggctcagaaatgcgaccggctggctagcttgtcctggttccttttttccagtgatattggctggccagagaaaaggccacggtggtcgaattccatcggacagtacaacttgctgaactgggtttctggtggagaccagccaagatcatacaaccagaaagtggtggctctagtgagaagattgtcgagtttagtcggtgttggaaaagaagatttgttctggctgagcaagacgttggacactgagcatgtggaggccgatgaaaagacgatggagtttgtcgtaaaggggattagtagcttgagcgatgaagtctccgagcaacaacaatggcagcatcttggcccattgctgaaaaagatacgggtctgttttgtcgcagatgtgggatgtgctattgtggtgatgcacatattcactcaagtatatttgaatgcagtagaagcggcggcagcgggagacgaaggagggggagatgcagatgatatggtggaggtgtgccgaaaactgtccaaCtacatgatgtacctctttgtcaaccacccttccatgcttccgctcaatgccagctccgaagccaccgtggttgagtttgcgaaatcgagagaggaactgtctaggacacaacaaggaagcaagatgaccctggatgagctatacaacattatacagcagaataaggatggtgtgtcaaggcaaggaacaatggaggaaatgtacaagatgatactagaagaggatgtccaaccaagctggggtgcagtggaggagatggcagcaatgtggctgcggttcctcatcttcgccgccggcaggtccaatggtaaggtgcacgcggcggagctggccagcggaggggagctcatcaccttcgcctggctgctcatggcccgggaagggctcggcgaatccgagaggagaagggtccggctgacgtccaccatatcgtccatttcgtctgctgattctgctggtgctgcagctgatttgaaggaagcatatgcgttctttttcaactga
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| Protein seq | MGVLSASATTRNPFVNGPESNSPVVIARDTVQGTKKMLKVVELELAIMYDDLYTKALVLRTRIGMILRCTSHACSLLAFALFLTCDKRRYNGVDVAITYSLFIGGFFLDLSAVFIFIMSPWTWAWLKAQKCDRLASLSWFLFSSDIGWPEKRPRWSNSIGQYNLLNWVSGGDQPRSYNQKVVALVRRLSSLVGVGKEDLFWLSKTLDTEHVEADEKTMEFVVKGISSLSDEVSEQQQWQHLGPLLKKIRVCFVADVGCAIVVMHIFTQVYLNAVEAAAAGDEGGGDADDMVEVCRKLSNYMMYLFVNHPSMLPLNASSEATVVEFAKSREELSRTQQGSKMTLDELYNIIQQNKDGVSRQGTMEEMYKMILEEDVQPSWGAVEEMAAMWLRFLIFAAGRSNGKVHAAELASGGELITFAWLLMAREGLGESERRRVRLTSTISSISSADSAGAAADLKEAYAFFFN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_07g0004990 | OsGoSa_07g0004990.01 | Chr07 | 4134791 | 4139793 | - | NAM | ||
| CDS seq | atgggggtgctgtcggcatcggctacgacgcgtaacccatttgttaatggtccagaatctaattccccagttgttattgctcgagacacggtacagggaaccaaaaaaatgctcaaggtggtggagcttgagcttgcaatcatgtacgatgacctctacacaaaggctcttgtgctgagaacaaggataggcatgattctccgatgcacctctcacgcatgttccctccttgcttttgcactgttccttacatgtgacaaacggaggtacaacggagttgatgttgcgatcacctattcgctgtttatcggaggctttttccttgatctttctgcagtgtttatcttcataatgtctccatggacttgggcgtggttgaaggctcagaaatgcgaccggctggctagcttgtcctggttccttttttccagtgatattggctggccagagaaaaggccacggtggtcgaattccatcggacagtacaacttgctgaactgggtttctggtggagaccagccaagatcatacaaccagaaagtggtggctctagtgagaagattgtcgagtttagtcggtgttggaaaagaagatttgttctggctgagcaagacgttggacactgagcatgtggaggccgatgaaaagacgatggagtttgtcgtaaaggggattagtagcttgagcgatgaagtctccgagcaacaacaatggcagcatcttggcccattgctgaaaaagatacgggtctgttttgtcgcagatgtgggatgtgctattgtggtgatgcacatattcactcaagtatatttgaatgcagtagaagcggcggcagcgggagacgaaggagggggagatgcagatgatatggtggaggtgtgccgaaaactgtccaaCtacatgatgtacctctttgtcaaccacccttccatgcttccgctcaatgccagctccgaagccaccgtggttgagtttgcgaaatcgagagaggaactgtctaggacacaacaaggaagcaagatgaccctggatgagctatacaacattatacagcagaataaggatggtgtgtcaaggcaaggaacaatggaggaaatgtacaagatgatactagaagaggatgtccaaccaagctggggtgcagtggaggagatggcagcaatgtggctgcggttcctcatcttcgccgccggcaggtccaatggtaaggtgcacgcggcggagctggccagcggaggggagctcatcaccttcgcctggctgctcatggcccgggaagggctcggcgaatccgagaggagaagggtccggctgacgtccaccatatcgtccatttcgtctgctgattctgctggtgctgcagctgatttgaaggaagcatatgcgttctttttcaactga
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| Protein seq | MGVLSASATTRNPFVNGPESNSPVVIARDTVQGTKKMLKVVELELAIMYDDLYTKALVLRTRIGMILRCTSHACSLLAFALFLTCDKRRYNGVDVAITYSLFIGGFFLDLSAVFIFIMSPWTWAWLKAQKCDRLASLSWFLFSSDIGWPEKRPRWSNSIGQYNLLNWVSGGDQPRSYNQKVVALVRRLSSLVGVGKEDLFWLSKTLDTEHVEADEKTMEFVVKGISSLSDEVSEQQQWQHLGPLLKKIRVCFVADVGCAIVVMHIFTQVYLNAVEAAAAGDEGGGDADDMVEVCRKLSNYMMYLFVNHPSMLPLNASSEATVVEFAKSREELSRTQQGSKMTLDELYNIIQQNKDGVSRQGTMEEMYKMILEEDVQPSWGAVEEMAAMWLRFLIFAAGRSNGKVHAAELASGGELITFAWLLMAREGLGESERRRVRLTSTISSISSADSAGAAADLKEAYAFFFN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 15.372687 | 18.831949 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0180300 | RBH | 6.751785 | 5.073738 | 6.831052 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08290 | RBH | 4.355712 | 3.276233 | 1.664232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0180300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005050 | RBH | 3.782255 | 2.995927 | 0.908086 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005010 | RBH | 1.521940 | 0.834120 | 2.807962 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004920 | RBH | 7.889651 | 1.741992 | 8.398083 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004850 | RBH | 0.913679 | 0.137636 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004960 | RBH | 27.042873 | 3.977464 | 3.731117 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0070400 | RBH | 14.6077265 | 9.737628 | 0.0482995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005480 | RBH | 1.704120 | 0.200664 | 1.008970 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0073700 | RBH | 10.2825565 | 27.1632045 | 0.1252165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004940 | RBH | 0.657030 | 0.077548 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004950 | RBH | 3.148166 | 3.151843 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005070 | RBH | 3.250651 | 0.100348 | 1.002058 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004930 | RBH | 0.645140 | 1.618678 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005130 | RBH | 1.982673 | 0.692160 | 2.133246 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004910 | RBH | 7.976732 | 10.176252 | 5.393034 |
