Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_07g0180300 OGI:07012560 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr07:4226700-4230082
Gene Symbol -
DNA seq

AGTATAAATGACAATCTTGTTCAACTTCTTACAACTGTATATATGGCGAAGTATTACACAGATACGGTTACAGTCAAGAGAAAAGGAAGGAGAAAATCTGGGATATATATAGGGGCTGGCAGCTATAGAAAGCCCAAATCATATCAGCCATGCATTATCTCTTATCACAGGAAGATTGCTGGTTATTAATCCTAACTCTACTTCATACATAGCTTTAGATTATAAAGATGTAGGGAACAACAAACAAAGCTACTCAAATCAGCTAAAGTACTAATCAAACTTTCAAACTTTAATCAGTTGAAAAAGAACGCATATGCTTCCTTCAAATCAGCTGCAGCACCAGCAGAATCAGCAGACGAAATGGACGATATGGTGGACGTCAGCCGGACCCTTCTCCTCTCGGATTCGCCGAGCCCTTCCCGGGCCATGAGCAGCCAGGCGAAGGTGATGAGCTCCCCTCCGCTGGCCAGCTCCGCCGCGTGCACCTTACCATTGGACCTGCCGGCGGCGAAGATGAGGAACCGCAGCCACATTGCTGCCATCTCCTCCACTGCACCCCAGCTTGGTTGGACATCCTCTTCTAGTATCATCTTGTACATTTCCTCCATTGTTCCTTGCCTTGACACACCATCCTTATTCTGCTGTATAATGTTGTATAGCTCATCCAGGGTCATCTTGCTTCCTTGTTGTGTCCTAGACAGTTCCTCTCTCGATTTCGCAAACTCAACCACGGTGGCTTCGGAGCTGGCATTGAGCGGAAGCATGGAAGGGTGGTTGACAAAGAGGTACATCATGTAGTTGGACAGTTTTCGGCACACCTCCACCATATCATCTGCATCTCCCCCTCCTTCGTCTCCCGCTGCCGCGGCTTCTACTGCATTCAAATATACTTGAGTGAATATGTGCATCACCACAATAGCACATCCCATATCTGCGACAAAACAGACCCGTATCTTTTTCAGCAATGGGCCAAGATGCTGCCATTGTTGTTGCTCGGAGACTTCATCGCTCAAGCTACTAATCCCCTTTACGACAAACTCCATCGTCTTTTCATCGGCCTCCACATGCTCAGTGTCCAACGTCTTGCTCAGCCAGAACAAATCTTCTTTTCCAACACCGACTAAACTCGACAATCTTCTCACTAGAGCCACCACTTTCTGGTTGTATGATCTTGGCTGGTCTCCACCAGAAACCCAGTTCAGCAAGTTGTACTGTCCGATGGAATTCGACCACCGTGGCCTTTTCTCTGGCCAGCCAATATCACTGGAAAAAAGGAACCAGGACAAGCTAGCCAGCCGGTCGCATTTCTGAGCCTTCAACCACGCCCAAGTCCATGGAGACATTATGAAGATAAACACTGCAGAAAGATCAAGGAAAAAGCCTCCGATAAACAGCGAATAGGTGATCGCAACATCAACTCCGTTGTACCTCCGTTTGTCACATGTAAGGAACAGTGCAAAAGCAAGGAGGGAACATGCGTGAGAGGTGCATCGGAGAATCATGCCTATCCTTGTTCTCAGCACAAGAGCCTTTGTGTAGAGGTCATCGTACATGATTGCAAGCTCAAGCTCCACCACCTTGAGCATTTTTTTGGTTCCCTGTACCGTGTCTCGAGCAATAACAACTGGGGAATTAGATTCTGGACCATTAACAAATGGGTTACGCGCTGCAAAGACATTGTGGACATTTAGCATTGAACATAGAGCATCCAAAACTACCTTAGAATAGCCATGATCCGAATCGTTTAATTCCGGAAACCGTTTCTTGTAGTGATCTCCAGTTGAGCTCTCGAGACTTTTAAACCTTCCATACTTGAGAGACAGTGTCCTTTCTCCATACTTGGTAACTCCGGCAATGAACACAAGGACACCTGAAACTAGAAGCTCTGCACTGTGCCTTGCTGGCGATTTCCAGAAAACATATGCAGCTAGGACTACTTGCACCACCAAGTTCAAGAGATGCCTCAGCCACAAGTTGTTGTCTGCCATTGAAAATGCGGTGATGCTGTCCTGCCCACCAAGATGGATGAGGAGGAATGATGCCCAAAAGAAAGCTAGTGGCTGGGTTCCCCCTGACATTTGCCTCTGAATATCATCGTGTCGTGAGAGGTAACCAAGAGCATAAACTGCTGTGAAGTCTGCTCCCAAATAAGCTGTCCAGATAGAAACCCTGAGGAACACATTGGTGTTGCGCCTCCGAAGACTGCCGGTGAAAAAGAGGAACATTTGGAGTGTGAAGCTGAGGAGCACAAGCAGCTGGATTTCCCGCTGATGATAAAGTTTCATAAAATCCTTCATTATTATAAATTTAAGAGCACCTGTGTTGGATATTCCAGTAATCATTTAGTACAAGTTTTAAAAAGAAGATTACATTTTCGACGTACTACAACCCAGAAACGTAAAGAAAAAGAAGTCAGAGTAAATTCTTTAAAATTCTAGGTATATATTATGATCTAAATTGCATAAATCCAGAAGTTTTGGCACGTGGCATATAACACTGGATATATTATAGTCCTACAGTTTCATATAACCGCACTGTTTATTAATTTTACTTGCTACTATTGTGTCAAAACAAAAACAAAAAAAAAATGCTTAACTTAATGGCTATCAAACTTTTTATACAATAGATCAAATAATTCTTCATATATTTCAGAATTAATTTAGAACCCACAAATATGGTCAATCAAATAACAATTTATTAACAGCATGATTTTATGAAACTATAAAACCATAGCACCAAGAATAATCATATGCTCCGTGCTAAAATTCCATTTTTTTTTGCAAACAGCAACAAATCGATTCACAATATTAAAGCTCGATGCATGTATGTACAACAAGAAAATAGTAAATACCCCGGTTGTTTGTGACAGTTTTTGCCCAGTGTAATTAATTAGTTATACCTATAATATATCCTATCTACAATTCCCTCCGTTTCGTTCCGTTCCACGATATAAGACGTTTTTTATCTAAATATACTAGCATACATATGAATTTATACACATCTATAAACATATATATGGATCCATATATGAATCTATAAAATCCCAAAACGTCCTATAATGTGAAAAAGAGAAAAATACATCTATTTAAAAATATAGCAATCGAAAGAGATACAACCTAATACTACGAATCTGAACAGATATATTGGTACCATGATTGTATTCCCATCTAATCCTAGATTTACTATATTTTGCAACTAAGAGAATACTATTCTAAACTCATTTCTCTCTCTCTCCTATGTCGGCCGGCTTTGCTGCCATGGAAAGGAAGGAGGAGACCGACCTCTGCACGACCGGCGTCTCCCGCCAGGAACCCCAGCCACCGGACGACGGATCAGCCGTACGTCGCCGTGTCCAGGAGGTAGCAGATCGAGTGGAGGAGGGA

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CDS seq

ATGAAGGATTTTATGAAACTTTATCATCAGCGGGAAATCCAGCTGCTTGTGCTCCTCAGCTTCACACTCCAAATGTTCCTCTTTTTCACCGGCAGTCTTCGGAGGCGCAACACCAATGTGTTCCTCAGGGTTTCTATCTGGACAGCTTATTTGGGAGCAGACTTCACAGCAGTTTATGCTCTTGGTTACCTCTCACGACACGATGATATTCAGAGGCAAATGTCAGGGGGAACCCAGCCACTAGCTTTCTTTTGGGCATCATTCCTCCTCATCCATCTTGGTGGGCAGGACAGCATCACCGCATTTTCAATGGCAGACAACAACTTGTGGCTGAGGCATCTCTTGAACTTGGTGGTGCAAGTAGTCCTAGCTGCATATGTTTTCTGGAAATCGCCAGCAAGGCACAGTGCAGAGCTTCTAGTTTCAGGTGTCCTTGTGTTCATTGCCGGAGTTACCAAGTATGGAGAAAGGACACTGTCTCTCAAGTATGGAAGGTTTAAAAGTCTCGAGAGCTCAACTGGAGATCACTACAAGAAACGGTTTCCGGAATTAAACGATTCGGATCATGGCTATTCTAAGGTAGTTTTGGATGCTCTATGTTCAATGCTAAATGTCCACAATGTCTTTGCAGCGCGTAACCCATTTGTTAATGGTCCAGAATCTAATTCCCCAGTTGTTATTGCTCGAGACACGGTACAGGGAACCAAAAAAATGCTCAAGGTGGTGGAGCTTGAGCTTGCAATCATGTACGATGACCTCTACACAAAGGCTCTTGTGCTGAGAACAAGGATAGGCATGATTCTCCGATGCACCTCTCACGCATGTTCCCTCCTTGCTTTTGCACTGTTCCTTACATGTGACAAACGGAGGTACAACGGAGTTGATGTTGCGATCACCTATTCGCTGTTTATCGGAGGCTTTTTCCTTGATCTTTCTGCAGTGTTTATCTTCATAATGTCTCCATGGACTTGGGCGTGGTTGAAGGCTCAGAAATGCGACCGGCTGGCTAGCTTGTCCTGGTTCCTTTTTTCCAGTGATATTGGCTGGCCAGAGAAAAGGCCACGGTGGTCGAATTCCATCGGACAGTACAACTTGCTGAACTGGGTTTCTGGTGGAGACCAGCCAAGATCATACAACCAGAAAGTGGTGGCTCTAGTGAGAAGATTGTCGAGTTTAGTCGGTGTTGGAAAAGAAGATTTGTTCTGGCTGAGCAAGACGTTGGACACTGAGCATGTGGAGGCCGATGAAAAGACGATGGAGTTTGTCGTAAAGGGGATTAGTAGCTTGAGCGATGAAGTCTCCGAGCAACAACAATGGCAGCATCTTGGCCCATTGCTGAAAAAGATACGGGTCTGTTTTGTCGCAGATATGGGATGTGCTATTGTGGTGATGCACATATTCACTCAAGTATATTTGAATGCAGTAGAAGCCGCGGCAGCGGGAGACGAAGGAGGGGGAGATGCAGATGATATGGTGGAGGTGTGCCGAAAACTGTCCAACTACATGATGTACCTCTTTGTCAACCACCCTTCCATGCTTCCGCTCAATGCCAGCTCCGAAGCCACCGTGGTTGAGTTTGCGAAATCGAGAGAGGAACTGTCTAGGACACAACAAGGAAGCAAGATGACCCTGGATGAGCTATACAACATTATACAGCAGAATAAGGATGGTGTGTCAAGGCAAGGAACAATGGAGGAAATGTACAAGATGATACTAGAAGAGGATGTCCAACCAAGCTGGGGTGCAGTGGAGGAGATGGCAGCAATGTGGCTGCGGTTCCTCATCTTCGCCGCCGGCAGGTCCAATGGTAAGGTGCACGCGGCGGAGCTGGCCAGCGGAGGGGAGCTCATCACCTTCGCCTGGCTGCTCATGGCCCGGGAAGGGCTCGGCGAATCCGAGAGGAGAAGGGTCCGGCTGACGTCCACCATATCGTCCATTTCGTCTGCTGATTCTGCTGGTGCTGCAGCTGATTTGAAGGAAGCATATGCGTTCTTTTTCAACTGA

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Protein seq

MKDFMKLYHQREIQLLVLLSFTLQMFLFFTGSLRRRNTNVFLRVSIWTAYLGADFTAVYALGYLSRHDDIQRQMSGGTQPLAFFWASFLLIHLGGQDSITAFSMADNNLWLRHLLNLVVQVVLAAYVFWKSPARHSAELLVSGVLVFIAGVTKYGERTLSLKYGRFKSLESSTGDHYKKRFPELNDSDHGYSKVVLDALCSMLNVHNVFAARNPFVNGPESNSPVVIARDTVQGTKKMLKVVELELAIMYDDLYTKALVLRTRIGMILRCTSHACSLLAFALFLTCDKRRYNGVDVAITYSLFIGGFFLDLSAVFIFIMSPWTWAWLKAQKCDRLASLSWFLFSSDIGWPEKRPRWSNSIGQYNLLNWVSGGDQPRSYNQKVVALVRRLSSLVGVGKEDLFWLSKTLDTEHVEADEKTMEFVVKGISSLSDEVSEQQQWQHLGPLLKKIRVCFVADMGCAIVVMHIFTQVYLNAVEAAAAGDEGGGDADDMVEVCRKLSNYMMYLFVNHPSMLPLNASSEATVVEFAKSREELSRTQQGSKMTLDELYNIIQQNKDGVSRQGTMEEMYKMILEEDVQPSWGAVEEMAAMWLRFLIFAAGRSNGKVHAAELASGGELITFAWLLMAREGLGESERRRVRLTSTISSISSADSAGAAADLKEAYAFFFN

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_07g0180300 OsNip_07t0180300-01 Chr07 4226700 4230082 - RAP2018-11-26
CDS seq

ATGAAGGATTTTATGAAACTTTATCATCAGCGGGAAATCCAGCTGCTTGTGCTCCTCAGCTTCACACTCCAAATGTTCCTCTTTTTCACCGGCAGTCTTCGGAGGCGCAACACCAATGTGTTCCTCAGGGTTTCTATCTGGACAGCTTATTTGGGAGCAGACTTCACAGCAGTTTATGCTCTTGGTTACCTCTCACGACACGATGATATTCAGAGGCAAATGTCAGGGGGAACCCAGCCACTAGCTTTCTTTTGGGCATCATTCCTCCTCATCCATCTTGGTGGGCAGGACAGCATCACCGCATTTTCAATGGCAGACAACAACTTGTGGCTGAGGCATCTCTTGAACTTGGTGGTGCAAGTAGTCCTAGCTGCATATGTTTTCTGGAAATCGCCAGCAAGGCACAGTGCAGAGCTTCTAGTTTCAGGTGTCCTTGTGTTCATTGCCGGAGTTACCAAGTATGGAGAAAGGACACTGTCTCTCAAGTATGGAAGGTTTAAAAGTCTCGAGAGCTCAACTGGAGATCACTACAAGAAACGGTTTCCGGAATTAAACGATTCGGATCATGGCTATTCTAAGGTAGTTTTGGATGCTCTATGTTCAATGCTAAATGTCCACAATGTCTTTGCAGCGCGTAACCCATTTGTTAATGGTCCAGAATCTAATTCCCCAGTTGTTATTGCTCGAGACACGGTACAGGGAACCAAAAAAATGCTCAAGGTGGTGGAGCTTGAGCTTGCAATCATGTACGATGACCTCTACACAAAGGCTCTTGTGCTGAGAACAAGGATAGGCATGATTCTCCGATGCACCTCTCACGCATGTTCCCTCCTTGCTTTTGCACTGTTCCTTACATGTGACAAACGGAGGTACAACGGAGTTGATGTTGCGATCACCTATTCGCTGTTTATCGGAGGCTTTTTCCTTGATCTTTCTGCAGTGTTTATCTTCATAATGTCTCCATGGACTTGGGCGTGGTTGAAGGCTCAGAAATGCGACCGGCTGGCTAGCTTGTCCTGGTTCCTTTTTTCCAGTGATATTGGCTGGCCAGAGAAAAGGCCACGGTGGTCGAATTCCATCGGACAGTACAACTTGCTGAACTGGGTTTCTGGTGGAGACCAGCCAAGATCATACAACCAGAAAGTGGTGGCTCTAGTGAGAAGATTGTCGAGTTTAGTCGGTGTTGGAAAAGAAGATTTGTTCTGGCTGAGCAAGACGTTGGACACTGAGCATGTGGAGGCCGATGAAAAGACGATGGAGTTTGTCGTAAAGGGGATTAGTAGCTTGAGCGATGAAGTCTCCGAGCAACAACAATGGCAGCATCTTGGCCCATTGCTGAAAAAGATACGGGTCTGTTTTGTCGCAGATATGGGATGTGCTATTGTGGTGATGCACATATTCACTCAAGTATATTTGAATGCAGTAGAAGCCGCGGCAGCGGGAGACGAAGGAGGGGGAGATGCAGATGATATGGTGGAGGTGTGCCGAAAACTGTCCAACTACATGATGTACCTCTTTGTCAACCACCCTTCCATGCTTCCGCTCAATGCCAGCTCCGAAGCCACCGTGGTTGAGTTTGCGAAATCGAGAGAGGAACTGTCTAGGACACAACAAGGAAGCAAGATGACCCTGGATGAGCTATACAACATTATACAGCAGAATAAGGATGGTGTGTCAAGGCAAGGAACAATGGAGGAAATGTACAAGATGATACTAGAAGAGGATGTCCAACCAAGCTGGGGTGCAGTGGAGGAGATGGCAGCAATGTGGCTGCGGTTCCTCATCTTCGCCGCCGGCAGGTCCAATGGTAAGGTGCACGCGGCGGAGCTGGCCAGCGGAGGGGAGCTCATCACCTTCGCCTGGCTGCTCATGGCCCGGGAAGGGCTCGGCGAATCCGAGAGGAGAAGGGTCCGGCTGACGTCCACCATATCGTCCATTTCGTCTGCTGATTCTGCTGGTGCTGCAGCTGATTTGAAGGAAGCATATGCGTTCTTTTTCAACTGA

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Protein seq

MKDFMKLYHQREIQLLVLLSFTLQMFLFFTGSLRRRNTNVFLRVSIWTAYLGADFTAVYALGYLSRHDDIQRQMSGGTQPLAFFWASFLLIHLGGQDSITAFSMADNNLWLRHLLNLVVQVVLAAYVFWKSPARHSAELLVSGVLVFIAGVTKYGERTLSLKYGRFKSLESSTGDHYKKRFPELNDSDHGYSKVVLDALCSMLNVHNVFAARNPFVNGPESNSPVVIARDTVQGTKKMLKVVELELAIMYDDLYTKALVLRTRIGMILRCTSHACSLLAFALFLTCDKRRYNGVDVAITYSLFIGGFFLDLSAVFIFIMSPWTWAWLKAQKCDRLASLSWFLFSSDIGWPEKRPRWSNSIGQYNLLNWVSGGDQPRSYNQKVVALVRRLSSLVGVGKEDLFWLSKTLDTEHVEADEKTMEFVVKGISSLSDEVSEQQQWQHLGPLLKKIRVCFVADMGCAIVVMHIFTQVYLNAVEAAAAGDEGGGDADDMVEVCRKLSNYMMYLFVNHPSMLPLNASSEATVVEFAKSREELSRTQQGSKMTLDELYNIIQQNKDGVSRQGTMEEMYKMILEEDVQPSWGAVEEMAAMWLRFLIFAAGRSNGKVHAAELASGGELITFAWLLMAREGLGESERRRVRLTSTISSISSADSAGAAADLKEAYAFFFN

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 6.751785 5.073738 6.831052

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0180100 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g08290 RBH 4.355712 3.276233 1.664232
Nipponbare | IRGSP 1.0 | RAP-db Os07g0180300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0005050 RBH 3.782255 2.995927 0.908086
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0005010 RBH 1.521940 0.834120 2.807962
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0004920 RBH 7.889651 1.741992 8.398083
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0004850 RBH 0.913679 0.137636 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0004960 RBH 27.042873 3.977464 3.731117
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0070400 RBH 14.6077265 9.737628 0.0482995
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0005480 RBH 1.704120 0.200664 1.008970
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0073700 RBH 10.2825565 27.1632045 0.1252165
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0004940 RBH 0.657030 0.077548 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0004950 RBH 3.148166 3.151843 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0004990 RBH 15.372687 18.831949 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0005070 RBH 3.250651 0.100348 1.002058
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0004930 RBH 0.645140 1.618678 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G005130 RBH 1.982673 0.692160 2.133246
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0004910 RBH 7.976732 10.176252 5.393034
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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