Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_06g0025260 | OGI:06077620 | 12/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr06:28987385-28988755 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacacaacaaatttgcatactgaagaagatAaaaaaaaaagttcgatagattcatcgctcatactagcaagcatggcaatgccagttggagttgcaccggtgttgttactgttgcttttgccattggcggcggcgacggcggcggcggagagtgacgacagggacgcgctgatggcgttcaaggccggcgtgacgtcggacccgaccggcgtgctccggtcgtggaacgagacggtgcacttctgccggtggccgggggtgaactgcacggcggggcgcgtcacgtcgctggacgtgtccatgggccgcctcgccggcgagctctcgccggccgtcgccaacctcacgcggctcgtggtgctcaacctcacctccaacgccttctccgggagcatccccggcggcctcggccggctccggcggatgcggtacctcagcctctgcgacaacgcgttcgccggcgagatacccgacgcgctccgcaactgcaccgccctcgccgtcgcgtacctcaacaacaacaacctcgtcggcggcgtcccacggtggctcggcgcgctgcccaacctcgccgtgctccggctcagccacaactcgctctccggccgcatcccgccgtcgctggcgaacctgacgaagatctttcggctcgagctcgaccagaaccttctggaaggttccatccccgacggcttgtcgcgcctcccggcgctcggcatgttagccttgtcgcagaacagcctcgccggagagatcccggtggggttcttcaacatgacgtcgctgcgtggcctcgcgctcgccgacaacgcgttccgcggcgagctcccgggcgacgcgggcgcgcgcacgccgaacctccagtacctcttcctcggcggcaacctcctcgccggcccgatctcggcgtcgctgtcgaacgccacggcgctggtggctctcagcctcgcgaacaacagcttcgccgggcaggtgcccggcgagatcggcacgctctgcccgctgtcgctggagctgtcgaacaaccagctcacggcgaccgacgacgccggcggcggctgggagttcatggacaacctgaccaactgcagcgccttggccgagatactcctcgacggcaacaagttcgccggcgtgatgccgccctccgtcgtccgcctctcgccgcagctcgaggcgctgaaccttgccggcaaccgcatatccggcgtaataccgccggagatcgagagcctcgtcgggctgcaaacgttgtgcctccagtccaatctcttctccggcgagatcccggaagcgatcggcaagctcaagaaccttcgagagctgctgctagagcagaacgaactggccgggccggtgccatccgccat
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| CDS seq | atggcggatggcaccggcccggccagttcgttctgctctagcagcagctctcgaaggttcttgagcttgccgatcgcttccgggatctcgccggagaagagattggactggaggcacaacgtttgcagcccgacgaggctctcgatctccggcggtattacgccggatatgcggttgccggcaaggttcagcgcctcgagctgcggcgagaggcggacgacggagggcggcatcacgccggcgaacttgttgccgtcgaggagtatctcggccaaggcgctgcagttggtcaggttgtccatgaactcccagccgccgccggcgtcgtcggtcgccgtgagctggttgttcgacagctccagcgacagcgggcagagcgtgccgatctcgccgggcacctgcccggcgaagctgttgttcgcgaggctgagagccaccagcgccgtggcgttcgacagcgacgccgagatcgggccggcgaggaggttgccgccgaggaagaggtactggaggttcggcgtgcgcgcgcccgcgtcgcccgggagctcgccgcggaacgcgttgtcggcgagcgcgaggccacgcagcgacgtcatgttgaagaaccccaccgggatctctccggcgaggctgttctgcgacaaggctaacatgccgagcgccgggaggcgcgacaagccgtcggggatggaaccttccagaaggttctggtcgagctcgagccgaaagatcttcgtcaggttcgccagcgacggcgggatgcggccggagagcgagttgtggctgagccggagcacggcgaggttgggcagcgcgccgagccaccgtgggacgccgccgacgaggttgttgttgttgaggtacgcgacggcgagggcggtgcagttgcggagcgcgtcgggtatctcgccggcgaacgcgttgtcgcagaggctgaggtaccgcatccgccggagccggccgaggccgccggggatgctcccggagaaggcgttggaggtgaggttgagcaccacgagccgcgtgaggttggcgacggccggcgagagctcgccggcgaggcggcccatggacacgtccagcgacgtgacgcgccccgccgtgcagttcacccccggccaccggcagaagtgcaccgtctcgttccacgaccggagcacgccggtcgggtccgacgtcacgccggccttgaacgccatcagcgcgtccctgtcgtcactctccgccgccgccgtcgccgccgccaatggcaaaagcaacagtaacaacaccggtgcaactccaactggcattgccatgcttgctatatgcaaatttgttgtgtga
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| Protein seq | MADGTGPASSFCSSSSSRRFLSLPIASGISPEKRLDWRHNVCSPTRLSISGGITPDMRLPARFSASSCGERRTTEGGITPANLLPSRSISAKALQLVRLSMNSQPPPASSVAVSWLFDSSSDSGQSVPISPGTCPAKLLFARLRATSAVAFDSDAEIGPARRLPPRKRYWRFGVRAPASPGSSPRNALSASARPRSDVMLKNPTGISPARLFCDKANMPSAGRRDKPSGMEPSRRFWSSSSRKIFVRFASDGGMRPESELWLSRSTARLGSAPSHRGTPPTRLLLLRYATARAVQLRSASGISPANALSQRLRYRIRRSRPRPPGMLPEKALEVRLSTTSRVRLATAGESSPARRPMDTSSDVTRPAVQFTPGHRQKCTVSFHDRSTPVGSDVTPALNAISASLSSLSAAAVAAANGKSNSNNTGATPTGIAMLAICKFVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_06g0025260 | OsGoSa_06g0025260.01 | Chr06 | 28987385 | 28988755 | - | NAM | ||
| CDS seq | atggcggatggcaccggcccggccagttcgttctgctctagcagcagctctcgaaggttcttgagcttgccgatcgcttccgggatctcgccggagaagagattggactggaggcacaacgtttgcagcccgacgaggctctcgatctccggcggtattacgccggatatgcggttgccggcaaggttcagcgcctcgagctgcggcgagaggcggacgacggagggcggcatcacgccggcgaacttgttgccgtcgaggagtatctcggccaaggcgctgcagttggtcaggttgtccatgaactcccagccgccgccggcgtcgtcggtcgccgtgagctggttgttcgacagctccagcgacagcgggcagagcgtgccgatctcgccgggcacctgcccggcgaagctgttgttcgcgaggctgagagccaccagcgccgtggcgttcgacagcgacgccgagatcgggccggcgaggaggttgccgccgaggaagaggtactggaggttcggcgtgcgcgcgcccgcgtcgcccgggagctcgccgcggaacgcgttgtcggcgagcgcgaggccacgcagcgacgtcatgttgaagaaccccaccgggatctctccggcgaggctgttctgcgacaaggctaacatgccgagcgccgggaggcgcgacaagccgtcggggatggaaccttccagaaggttctggtcgagctcgagccgaaagatcttcgtcaggttcgccagcgacggcgggatgcggccggagagcgagttgtggctgagccggagcacggcgaggttgggcagcgcgccgagccaccgtgggacgccgccgacgaggttgttgttgttgaggtacgcgacggcgagggcggtgcagttgcggagcgcgtcgggtatctcgccggcgaacgcgttgtcgcagaggctgaggtaccgcatccgccggagccggccgaggccgccggggatgctcccggagaaggcgttggaggtgaggttgagcaccacgagccgcgtgaggttggcgacggccggcgagagctcgccggcgaggcggcccatggacacgtccagcgacgtgacgcgccccgccgtgcagttcacccccggccaccggcagaagtgcaccgtctcgttccacgaccggagcacgccggtcgggtccgacgtcacgccggccttgaacgccatcagcgcgtccctgtcgtcactctccgccgccgccgtcgccgccgccaatggcaaaagcaacagtaacaacaccggtgcaactccaactggcattgccatgcttgctatatgcaaatttgttgtgtga
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| Protein seq | MADGTGPASSFCSSSSSRRFLSLPIASGISPEKRLDWRHNVCSPTRLSISGGITPDMRLPARFSASSCGERRTTEGGITPANLLPSRSISAKALQLVRLSMNSQPPPASSVAVSWLFDSSSDSGQSVPISPGTCPAKLLFARLRATSAVAFDSDAEIGPARRLPPRKRYWRFGVRAPASPGSSPRNALSASARPRSDVMLKNPTGISPARLFCDKANMPSAGRRDKPSGMEPSRRFWSSSSRKIFVRFASDGGMRPESELWLSRSTARLGSAPSHRGTPPTRLLLLRYATARAVQLRSASGISPANALSQRLRYRIRRSRPRPPGMLPEKALEVRLSTTSRVRLATAGESSPARRPMDTSSDVTRPAVQFTPGHRQKCTVSFHDRSTPVGSDVTPALNAISASLSSLSAAAVAAANGKSNSNNTGATPTGIAMLAICKFVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g44630 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025650 | RBH | 0.134394 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025460 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025720 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0422100 | SBH | 0 | 0.04038 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0415700 | RBH | 0.280241 | 1.229753 | 0.0375575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025610 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0025860 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025510 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G024560 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0024700 | SBH | 0.0 | 0.0 | 0.0 |
