Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_06g0020420 | OGI:01009240 | 2/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr06:24267994-24270695 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcctcttcgagtgtcctgtctccaaacatcgcatgggttctttgtcacttcatcttttgcagcatatcgttagccatctgcaatgaaactggcgatagacaggctctcctttgcttcaagtctcagctctctggttcatctagagttctatcctcatggagcaacacatccttgaatttctgcaactgggatggagtcacctgcagctcacgaagtcctccccgggtcattgcaatagatctctcatcagaaggcatcacgggcaccatatcaccttgcattgccaacctgacctctcttatgacacttcaactgtcaaacaacagcctccatggcagcataccacccaagcttggcctcctgagaaaactcaggaacctcaacctcagcatgaactctttagaaggtaacattccatctcaactttcttcatgttcccaaattgaaatcctagatttgtcaagcaattccttccaaggtgcaatcccagctagcctaggcaaatgcatacatcttcaggatattaatctcagcagaaacaatttgcaaggtagaatcccctctgcttttgggaatctttctaagctgcaagcactggtcctcactagcaacaggctcacagatgaaacaccaccatctctaggcagcagcttttctctcagatatgttgatcttgggaataatgatatcacaggaagcataccagagtccttggaaaacagttcatctctcgaagtacttaggttcatgagcaataatcttagtggagaagtcccaaagtctctattcaatacttcatcacttaccgccattttcctacaacaaaacagctttgttggttctatacccgctattacggccatgtcctcccccattaaatatctttccttaagggacaattgcatctcaggaacaataccgccctcactaggtaacctttcttCcctacttgaacttcgcctttctaagaacaatttagttggtaacattccagagagcttaggtcatatccgaacactagagatactgaccatgagtgtgaacaacttgtctggtctagttccaccatctctggaagaatgccagacgaagttggaaatctcattaatttgaacaaacttggaatctcaaacaacatgttgtctggagagatcccatcctcccttggccagtgtgtgactctggagtatcttgagatacaatgcaacttctttgtaggacgtattccacaatcttttatgaacttagtaagcataaaagagatggatatatctcggaataaTttgtctgggaatatcccacagttcctcaaatcgctgagttccctacaggacctcaatttatccttcaacaattttgatggagtcattccaacgggtggcgttttcgacattgacaatgcagtatcaattgaaggaaataatcatttgtgtacaagtgttccaaaagttggtattccttcttgttctgttttggctgacaggAaaagggaactaagatcttggttctagtcctagagatactaataccagctatcattgctgttataatcactctatcctatgttgtgagaatttatggaaggaaggagatgcaagcaaaCccacattgccaacaaattaatgaccacgtgaaaaacattacatatcaagacattgtaaaggctacagataggttcagttctgccaatttaattggcacaggatcatttgggacggtttacaaaggtaatctagaccgtcagcaagatgaggttgccatcaaagtatataaccttggaatttatggggaccaaaggagctttagtgtggagtgtgaagctctaagaaacattcgccatcgaaatcttgtaaaaatcatcactttgtgctcttcagtggattccaatggggcagacttcAaagcccttgtgttccaatatatggccaacgggaacttggacacttggCtacatccaagggctcatgaacacagtgagaggaaaactctgactttAaaccaaagaatcaatatagccttggatgtagcgtttcctttggactatctgcataaccaatgtgcatctccgctagtgcatcgtgacttgaagccaagcaatatccttttggaccttgacatgattgcttatgtcagtgactttggcctagcaagatgtctaaacaatacatcaaatgcatatgaaggaagttcaaaatctttggcttgcctaaaaggatctataggatacatcccaccaggcgagatagccatattcataatggtggccaactctttttgttcttcatagaattgtgggaacaggacatatataatatcTAACTtattacattcataaattaaatgcagagtatggcatgagtgaagtgatatcaaccaagggtgatgtctacagcttcggcgtgattttattggaaatgataacagggagtagtcctactgatgaaaaattcaataatggtacaagccttcgtgaacatgttgcaagagcttttcccaagaatacctatgagattgttgatcccaggatgctacaaggtgaaatgaacataacaacagtgatgcagaattgcatgattcctttggtcagaataggtctatgctgctctgctgcatctcctaaggaccgatgggaaatggggcaagtttctgccgaaatccttaagatcaagcatatattctcaagcatacatGgtgtatga
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| CDS seq | atggcctcttcgagtgtcctgtctccaaacatcgcatgggttctttgtcacttcatcttttgcagcatatcgttagccatctgcaatgaaactggcgatagacaggctctcctttgcttcaagtctcagctctctggttcatctagagttctatcctcatggagcaacacatccttgaatttctgcaactgggatggagtcacctgcagctcacgaagtcctccccgggtcattgcaatagatctctcatcagaaggcatcacgggcaccatatcaccttgcattgccaacctgacctctcttatgacacttcaactgtcaaacaacagcctccatggcagcataccacccaagcttggcctcctgagaaaactcaggaacctcaacctcagcatgaactctttagaaggtaacattccatctcaactttcttcatgttcccaaattgaaatcctagatttgtcaagcaattccttccaaggtgcaatcccagctagcctaggcaaatgcatacatcttcaggatattaatctcagcagaaacaatttgcaaggtagaatcccctctgcttttgggaatctttctaagctgcaagcactggtcctcactagcaacaggctcacagatgaaacaccaccatctctaggcagcagcttttctctcagatatgttgatcttgggaataatgatatcacaggaagcataccagagtccttggaaaacagttcatctctcgaagtacttaggttcatgagcaataatcttagtggagaagtcccaaagtctctattcaatacttcatcacttaccgccattttcctacaacaaaacagctttgttggttctatacccgctattacggccatgtcctcccccattaaatatctttccttaagggacaattgcatctcaggaacaataccgccctcactagagcttaggtcatatccgaacactagagatactgaccatgagtgtgaacaacttgtctggtctagttccaccatctctggaagaatgccagacgaagttggaaatctcattaatttgaacaaacttggaatctcaaacaacatgttgtctggagagatcccatcctcccttggccagtgtgtgactctggagtatcttgagatacaatgcaacttctttgtaggacgtattccacaatcttttatgaacttagAaaagggaactaagatcttggttctagtcctagagatactaataccagctatcattgctgttataatcactctatcctatgttgtgagaatttatggaaggaaggagatgcaagcaaaCccacattgccaacaaattaatgaccacgtgaaaaacattacatatcaagacattgtaaaggctacagataggttcagttctgccaatttaattggcacaggatcatttgggacggtttacaaaggtaatctagaccgtcagcaagatgaggttgccatcaaagtatataaccttggaatttatggggaccaaaggagctttagtgtggagtgtgaagctctaagaaacattcgccatcgaaatcttgtaaaaatcatcactttgtgctcttcagtggattccaatggggcagacttcAaagcccttgtgttccaatatatggccaacgggaacttggacacttggCtacatccaagggctcatgaacacaagtatggcatgagtgaagtgatatcaaccaagggtgatgtctacagcttcggcgtgattttattggaaatgataacagggagtagtcctactgatgaaaaattcaataatggtacaagccttcgtgaacatgttgcaagagcttttcccaagaatacctatgagattgttgatcccaggatgctacaaggtgaaatgaacataacaacagtgatgcagaattgcatgattcctttggtcagaataggtctatgctgctctgctgcatctcctaaggaccgatgggaaatggggcaagtttctgccgaaatccttaagatcaagcatatattctcaagcatacatGgtgtatga
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| Protein seq | MASSSVLSPNIAWVLCHFIFCSISLAICNETGDRQALLCFKSQLSGSSRVLSSWSNTSLNFCNWDGVTCSSRSPPRVIAIDLSSEGITGTISPCIANLTSLMTLQLSNNSLHGSIPPKLGLLRKLRNLNLSMNSLEGNIPSQLSSCSQIEILDLSSNSFQGAIPASLGKCIHLQDINLSRNNLQGRIPSAFGNLSKLQALVLTSNRLTDETPPSLGSSFSLRYVDLGNNDITGSIPESLENSSSLEVLRFMSNNLSGEVPKSLFNTSSLTAIFLQQNSFVGSIPAITAMSSPIKYLSLRDNCISGTIPPSLELRSYPNTRDTDHECEQLVWSSSTISGRMPDEVGNLINLNKLGISNNMLSGEIPSSLGQCVTLEYLEIQCNFFVGRIPQSFMNLEKGTKILVLVLEILIPAIIAVIITLSYVVRIYGRKEMQANPHCQQINDHVKNITYQDIVKATDRFSSANLIGTGSFGTVYKGNLDRQQDEVAIKVYNLGIYGDQRSFSVECEALRNIRHRNLVKIITLCSSVDSNGADFKALVFQYMANGNLDTWLHPRAHEHKYGMSEVISTKGDVYSFGVILLEMITGSSPTDEKFNNGTSLREHVARAFPKNTYEIVDPRMLQGEMNITTVMQNCMIPLVRIGLCCSAASPKDRWEMGQVSAEILKIKHIFSSIHGV |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_06g0020420 | OsGoSa_06g0020420.01 | Chr06 | 24267994 | 24270695 | + | NAM | ||
| CDS seq | atggcctcttcgagtgtcctgtctccaaacatcgcatgggttctttgtcacttcatcttttgcagcatatcgttagccatctgcaatgaaactggcgatagacaggctctcctttgcttcaagtctcagctctctggttcatctagagttctatcctcatggagcaacacatccttgaatttctgcaactgggatggagtcacctgcagctcacgaagtcctccccgggtcattgcaatagatctctcatcagaaggcatcacgggcaccatatcaccttgcattgccaacctgacctctcttatgacacttcaactgtcaaacaacagcctccatggcagcataccacccaagcttggcctcctgagaaaactcaggaacctcaacctcagcatgaactctttagaaggtaacattccatctcaactttcttcatgttcccaaattgaaatcctagatttgtcaagcaattccttccaaggtgcaatcccagctagcctaggcaaatgcatacatcttcaggatattaatctcagcagaaacaatttgcaaggtagaatcccctctgcttttgggaatctttctaagctgcaagcactggtcctcactagcaacaggctcacagatgaaacaccaccatctctaggcagcagcttttctctcagatatgttgatcttgggaataatgatatcacaggaagcataccagagtccttggaaaacagttcatctctcgaagtacttaggttcatgagcaataatcttagtggagaagtcccaaagtctctattcaatacttcatcacttaccgccattttcctacaacaaaacagctttgttggttctatacccgctattacggccatgtcctcccccattaaatatctttccttaagggacaattgcatctcaggaacaataccgccctcactagagcttaggtcatatccgaacactagagatactgaccatgagtgtgaacaacttgtctggtctagttccaccatctctggaagaatgccagacgaagttggaaatctcattaatttgaacaaacttggaatctcaaacaacatgttgtctggagagatcccatcctcccttggccagtgtgtgactctggagtatcttgagatacaatgcaacttctttgtaggacgtattccacaatcttttatgaacttagAaaagggaactaagatcttggttctagtcctagagatactaataccagctatcattgctgttataatcactctatcctatgttgtgagaatttatggaaggaaggagatgcaagcaaaCccacattgccaacaaattaatgaccacgtgaaaaacattacatatcaagacattgtaaaggctacagataggttcagttctgccaatttaattggcacaggatcatttgggacggtttacaaaggtaatctagaccgtcagcaagatgaggttgccatcaaagtatataaccttggaatttatggggaccaaaggagctttagtgtggagtgtgaagctctaagaaacattcgccatcgaaatcttgtaaaaatcatcactttgtgctcttcagtggattccaatggggcagacttcAaagcccttgtgttccaatatatggccaacgggaacttggacacttggCtacatccaagggctcatgaacacaagtatggcatgagtgaagtgatatcaaccaagggtgatgtctacagcttcggcgtgattttattggaaatgataacagggagtagtcctactgatgaaaaattcaataatggtacaagccttcgtgaacatgttgcaagagcttttcccaagaatacctatgagattgttgatcccaggatgctacaaggtgaaatgaacataacaacagtgatgcagaattgcatgattcctttggtcagaataggtctatgctgctctgctgcatctcctaaggaccgatgggaaatggggcaagtttctgccgaaatccttaagatcaagcatatattctcaagcatacatGgtgtatga
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| Protein seq | MASSSVLSPNIAWVLCHFIFCSISLAICNETGDRQALLCFKSQLSGSSRVLSSWSNTSLNFCNWDGVTCSSRSPPRVIAIDLSSEGITGTISPCIANLTSLMTLQLSNNSLHGSIPPKLGLLRKLRNLNLSMNSLEGNIPSQLSSCSQIEILDLSSNSFQGAIPASLGKCIHLQDINLSRNNLQGRIPSAFGNLSKLQALVLTSNRLTDETPPSLGSSFSLRYVDLGNNDITGSIPESLENSSSLEVLRFMSNNLSGEVPKSLFNTSSLTAIFLQQNSFVGSIPAITAMSSPIKYLSLRDNCISGTIPPSLELRSYPNTRDTDHECEQLVWSSSTISGRMPDEVGNLINLNKLGISNNMLSGEIPSSLGQCVTLEYLEIQCNFFVGRIPQSFMNLEKGTKILVLVLEILIPAIIAVIITLSYVVRIYGRKEMQANPHCQQINDHVKNITYQDIVKATDRFSSANLIGTGSFGTVYKGNLDRQQDEVAIKVYNLGIYGDQRSFSVECEALRNIRHRNLVKIITLCSSVDSNGADFKALVFQYMANGNLDTWLHPRAHEHKYGMSEVISTKGDVYSFGVILLEMITGSSPTDEKFNNGTSLREHVARAFPKNTYEIVDPRMLQGEMNITTVMQNCMIPLVRIGLCCSAASPKDRWEMGQVSAEILKIKHIFSSIHGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.730893 | 1.542495 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0586150 | SBH | 0.543865 | 0.402507 | 0.170149 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38670 | SBH | 0.332005 | 0.244379 | 0.039538 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0586150 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020780 | SBH | 0.134115 | 1.062366 | 0.983788 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020580 | SBH | 0.128209 | 0.915541 | 0.590720 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020730 | SBH | 0.119523 | 0.974873 | 2.135322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020540 | SBH | 0.0 | 0.024653 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020830 | SBH | 0.318380 | 0.370122 | 1.666568 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364900 | SBH | 1.1548545 | 4.9738295 | 3.1319425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020320 | SBH | 0.022439 | 0.160080 | 0.267884 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0340700 | SBH | 0 | 3.3867725 | 0.080806 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020740 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020800 | RBH | 0.000000 | 2.342795 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020390 | SBH | 1.448345 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021030 | SBH | 0.0 | 0.000000 | 0.043257 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020600 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020460 | SBH | 0.000000 | 0.0 | 0.049194 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020710 | SBH | 0.943500 | 1.175457 | 1.125513 |
