Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsGoSa_05g0007540 | OGI:05019460 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:7123991-7124741 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | aaatcattaatcataagcttttctaagaagaattggcagacctgaattacaagatcagtagaacttgatcagcatgatctcttacaaccttatacttaagagtgaaaagaaacaaacaaatgaacatgatgaacatatatcatatatatggatcatagctcacagcaacacaaccaaactagacaagacaagtacgtagtaaagtatgctttgcaaagccctgtttgaaacgcgagaatttcagagagatttcaccgagaatagtttgaattccgacgcgatccaaacaaaaattcttgcgtccaaatacaggagcctagcctagttgtactcgatcagaagcaggggaatcccccgctgatgaccgccgccgacatgccggactccctgcagaggcagtccagcttccaccctggcagctcgccgccgccgccggagcccggcctcttctcgctcgacgcggcggtggacaacggcaagccaccggacgatggcgtcctgcccgcctcgcaggaggccgcagcgccgccgctctccgacgacgggacgacggcgtcgtgggtgggctgagatgatgatctctccggcttgctgctcttgttggcctccatggatggctaatggctttcgcctccttcttcctcggttttcttggtttggttggtttgcttgcgaattgcgagatcgcgtgcttcgctagcgagcgactgtgtgcttggttggtgcgatggaggagagggtggtgctatta
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CDS seq | atggaggccaacaagagcagcaagccggagagatcatcatctcagcccacccacgacgccgtcgtcccgtcgtcggagagcggcggcgctgcggcctcctgcgaggcgggcaggacgccatcgtccggtggcttgccgttgtccaccgccgcgtcgagcgagaagaggccgggctccggcggcggcggcgagctgccagggtggaagctggactgcctctgcagggagtccggcatgtcggcggcggtcatcagcgggggattcccctgcttctga |
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Protein seq | MEANKSSKPERSSSQPTHDAVVPSSESGGAAASCEAGRTPSSGGLPLSTAASSEKRPGSGGGGELPGWKLDCLCRESGMSAAVISGGFPCF |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_05g0007540 | OsGoSa_05g0007540.01 | Chr05 | 7123991 | 7124741 | - | NAM | ||
CDS seq | atggaggccaacaagagcagcaagccggagagatcatcatctcagcccacccacgacgccgtcgtcccgtcgtcggagagcggcggcgctgcggcctcctgcgaggcgggcaggacgccatcgtccggtggcttgccgttgtccaccgccgcgtcgagcgagaagaggccgggctccggcggcggcggcgagctgccagggtggaagctggactgcctctgcagggagtccggcatgtcggcggcggtcatcagcgggggattcccctgcttctga
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Protein seq | MEANKSSKPERSSSQPTHDAVVPSSESGGAAASCEAGRTPSSGGLPLSTAASSEKRPGSGGGGELPGWKLDCLCRESGMSAAVISGGFPCF |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 3.095243 | 16.787722 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0215700 | RBH | 0.700556 | 0.717248 | 0.856123 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g12481 | RBH | 0.420644 | 0.428330 | 0.195677 |
Nipponbare | IRGSP 1.0 | RAP-db | Os05g0215700 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007560 | RBH | 1.937316 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007590 | RBH | 0.0 | 1.460281 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007490 | RBH | 5.386095 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007540 | RBH | 0.885517 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007620 | RBH | 12.194999 | 0.0 | 5.114400 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0107900 | RBH | 28.528225 | 59.0490415 | 183.0908435 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007490 | RBH | 1.208400 | 1.520228 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0106100 | RBH | 38.4330005 | 59.870857 | 4.101114 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007520 | RBH | 0.000000 | 0.165544 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007440 | RBH | 0.593034 | 37.077961 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008410 | RBH | 106.812752 | 4.118269 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007600 | RBH | 1.088014 | 0.0 | 0.643522 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007580 | RBH | 3.368383 | 4.508435 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G007350 | RBH | 1.303522 | 0.0 | 1.519807 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007600 | RBH | 3.033300 | 0.0 | 0.0 |