Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0215700 | OGI:05019460 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:7168867-7169563 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGAAGAATTGGCAGACCTGAATTACAAGATCAGTAGAACTTGATCAGCATGATCTCTTACAACCTTATACTTAAGAGTGAAAAGAAACAAACAAATGAACATGATGAACATATATCATATATATGGATCATAGCTCACAGCAACACAACCAAACTAGACAAGACAAGTACGTAGTAAAGTATGCTTTGCAAAGCCCTGTTTGAAACGCGAGAATTTCAGAGAGATTTCACCGAGAATAGTTTGAATTCCGACGCGATCCAAACAAAAATTCTTGCGTCCAAATACAGGAGCCTAGCCTAGTTGTACTCGATCAGAAGCAGGGGAATCCCCCGCTGATGACCGCCGCCGACATGCCGGACTCCCTGCAGAGGCAGTCCAGCTTCCACCCTGGCAGCTCGCCGCCGCCGCCGGAGCCCGGCCTCTTCTCGCTCGACGCGGCGGTGGACAACGGCAAGCCACCGGACGATGGCGTCCTGCCCGCCTCGCAGGAGGCCGCAGCGCCGCCGCTCGCCGACGCCGGGACGACGGCGTCGTGGGTGGGCTGAGATGATGATCTCTCCGGCTTGCTGCTCTTGTTGGCCTCCATGGATGGCTAATGGCTTTCGCCTCCTTCTTCCTCGGTTTTCTTGGTTTGGTTGGTTTGCTTGCGAATTGCGAGATCGCGTGCTTCGCTAGCGAGCGACTGTGTGCTTGGTT
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| CDS seq | ATGGAGGCCAACAAGAGCAGCAAGCCGGAGAGATCATCATCTCAGCCCACCCACGACGCCGTCGTCCCGGCGTCGGCGAGCGGCGGCGCTGCGGCCTCCTGCGAGGCGGGCAGGACGCCATCGTCCGGTGGCTTGCCGTTGTCCACCGCCGCGTCGAGCGAGAAGAGGCCGGGCTCCGGCGGCGGCGGCGAGCTGCCAGGGTGGAAGCTGGACTGCCTCTGCAGGGAGTCCGGCATGTCGGCGGCGGTCATCAGCGGGGGATTCCCCTGCTTCTGA |
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| Protein seq | MEANKSSKPERSSSQPTHDAVVPASASGGAAASCEAGRTPSSGGLPLSTAASSEKRPGSGGGGELPGWKLDCLCRESGMSAAVISGGFPCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0215700 | Os05t0215700-02 | Chr05 | 7168867 | 7169563 | - | irgsp1_rep | ||
| CDS seq | ATGGAGGCCAACAAGAGCAGCAAGCCGGAGAGATCATCATCTCAGCCCACCCACGACGCCGTCGTCCCGGCGTCGGCGAGCGGCGGCGCTGCGGCCTCCTGCGAGGCGGGCAGGACGCCATCGTCCGGTGGCTTGCCGTTGTCCACCGCCGCGTCGAGCGAGAAGAGGCCGGGCTCCGGCGGCGGCGGCGAGCTGCCAGGGTGGAAGCTGGACTGCCTCTGCAGGGAGTCCGGCATGTCGGCGGCGGTCATCAGCGGGGGATTCCCCTGCTTCTGA
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| Protein seq | MEANKSSKPERSSSQPTHDAVVPASASGGAAASCEAGRTPSSGGLPLSTAASSEKRPGSGGGGELPGWKLDCLCRESGMSAAVISGGFPCF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0215700 | RBH | 0.700556 | 0.717248 | 0.856123 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g12481 | RBH | 0.420644 | 0.428330 | 0.195677 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007560 | RBH | 1.937316 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007590 | RBH | 0.0 | 1.460281 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007490 | RBH | 5.386095 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007540 | RBH | 0.885517 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007620 | RBH | 12.194999 | 0.0 | 5.114400 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0107900 | RBH | 28.528225 | 59.0490415 | 183.0908435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007490 | RBH | 1.208400 | 1.520228 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0106100 | RBH | 38.4330005 | 59.870857 | 4.101114 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007520 | RBH | 0.000000 | 0.165544 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007440 | RBH | 0.593034 | 37.077961 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007540 | RBH | 3.095243 | 16.787722 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007600 | RBH | 1.088014 | 0.0 | 0.643522 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007580 | RBH | 3.368383 | 4.508435 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G007350 | RBH | 1.303522 | 0.0 | 1.519807 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007600 | RBH | 3.033300 | 0.0 | 0.0 |
