Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0024400 | OGI:04088650 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:32121173-32124706 | ||||||||
| Gene Symbol | OsbHLH050 | ||||||||||
| DNA seq | atggcgcttgacaccctgtgcagcgccggcggcgacgtcctcatctacgacacgttcaacgcctccgccgcggcggcggcggcggttgtgccgccggcgagcttcctcttcgggaataataatgccggcggcgcggcggggacggagacgagggtgcaggtggcggccggggcggtgccggaggtggaccagctgctgaagcaggctcagcagccggggaggaggaagcggcggcggcgggcgaggagctgcaagagccgggaggacgccgagagccagcggatgacccacattgccgtcgagcgcaaccgccgccgccagatgaacgagtacctcgccgtgctccggtcgctcatgccggagtcctacgtccaccgggtacgtacactagcacttactaacattctacatttcctgtacgctgaacttggaactctgatctgaggtgagaactgatccttagggttcatctccctagcttgattctcatttggacattggattttgggttgtgctgaactggagttggcaagagaatgtttcggcgagaagcactgtgatttttctctagtataaaaatcgtaccattatgtacccatccaacttttttttaagaaagattcgttcaacttttgtgatgtttaagcactttttttttttgctctttctcgtcaactgaatattgaggaatttccaggtctctttcatgctatcccaataatgaatcattaattcctccatggggcatacgttcctcggccactttgtgccattaatgtgcatgccccctccatgtcattatcattgcttgaatcatagtaacattattactgttctagtttactctcgctgacacaactgcttcgctctagaatcgcgatgatgctaggtatgctaggttgatttgatctgtcgtctctgcacttcactgtcgctcacttgcttgcttttaattggtcggcgtgtagggcgaccaggcgtccattgtcggcggcgccattgatttcgtgaaggagctcgagcagctgctgcaatccctcgaggcgcagaagcgcacgctgctgatgcagccgccgccgccaccgcagcagcagcgggagcccaagtgtgatgccgcggactccacgagcgcggccgatcaggagactccggcggcggcggcggcggatggaccgccgttcgcgcggttcttcacgtacccgcagtacgtgtggtgccacaacccggcgcaggacggcggcgggggcgggggcgcggcggcggagaaccgcgccggagtggcggacatcgaggtgagccttgtggagacgcacgccagcatccgggtgatggcggcgcggcggccggggcagctgctcaagatggtcgccggcctgcaggcgctccggctcaccgtcctccacctcaacgtcacggccctcggctcgcttgccctctactccatcagcgtcaaggtacgtatacacaggagtctgctgccAaaaaaaattcctccgttttcttgctgaaatatggcccattgttgcttttgcgtttcctttttaagcataaaccgtcagaaaaaaaaaggctgagaagtttcgtcatccaagatacatactccacataagatacgcatgagatgtccgcgagttagattaataacacgaataatctataatctacttgctagtactagtagaacgtttaaccgtccgtcttatttgaaaaaaatatgaaaaaaattaaaaagacaagtcatgcataaaatattaatcatgtattatcatctaacaacaataaaaatacgaattataaaaaaatttcatataagacggacagtcaaaattgaacacgAaaacttaggtttgacttttttttttggaacggaaagagtacgtatgtgcagcacctgatgtgacaaactgaccaaccaagtttgcaagagagacagccatacttctgatcagctcagatatacaaactactacacccaaatacaaactaccaaacggattgtcttagcatatggccaacacgactccacatgtgtacagatcgatgatgcgtgaggccatgagcctcatacaccgtgcttgcgtgtacgcggctcagctggcgctgcacacgtcttgacaatcatgagaggccatactcgccagccacacagggaagcaaaatcatctccatgcatctgttgctgcctatatagtgtagtacacgagaacaataaacgtgtcataaattctcctctgttacccatcgtacgtagaccaacatccccgggggtattttactatactagtagaggctattgcatgggtgatcactgatcagaattgcgtctcgctgctgctgctgttgatgctgctccatatctgccatggccgattgcttttgaccagagattccatggcggaaaggccattgcttcccttggccccttgggtgtgttctttctctgtgctctgtatctgtggtacagtactacagtggtaagagtacgtagctctgaacttgatgtgccccagtcgactggtgctgcactatatcaagccatggcacttcatactcacaaagggagatgcagaatttTAtatatatatgttttatactcctagataggtttagagagagagggagggagagagaggacgatggacagcactgtcacggagaatctttctgctggggagtagattgccaaggcgaaatctcagcagaaaagaaaaaaagggctacagagttttgtgtgtcattgtgtgctgctgccgccttttcttgcgctgttttatttacagcagagaatctgcctttacgaaacgatcgctctattgaaaagcgtcgcctgtgcctcgcttttttcctcctcggctttgtgcttgtggagcctctgtgtctgtgtgactaggcgatcgactcgtggtagcctctctgtctgtcccgtgtaatacctttgcttatcaatcgccgtttgatttccctcgaatcgcccactttgccttgcgggcattaatttgtgtactttgtgttgcgttggccggatgtgaatgtgatttgtggcatcaagcaatcctttgatttttgtgtgtggattttgcatttgcaggtggaggaagggtgcggcatggcgacggtggacgacatcgcagcggcggtgcaccacgtgctctgcatcatcgacgccgaggcggcgtcgcagatgctgctcgccggggaggcctccggttagcgtggccacctagcaagataggcgcgcggcggcggccggtgtaacaaatctgtaaagtgtagcggatctcgatcgatctctcccctcccgtaggcgagtcgggtgatttgggggtcggtggcgtagggcaaaagcccgtgtaagtgcaataacatgcggcccgttgtaatcctagccggTtttttttttttttttttgccgtcgagtgtgtgcgttttgcggttttctcggcggaagtcgacgtggaatccGggggagtgagacggtgaagagagggTttttttatccttgcttgtccctccatgttgggccgactaggtaca
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| CDS seq | atggcgcttgacaccctgtgcagcgccggcggcgacgtcctcatctacgacacgttcaacgcctccgccgcggcggcggcggcggttgtgccgccggcgagcttcctcttcgggaataataatgccggcggcgcggcggggacggagacgagggtgcaggtggcggccggggcggtgccggaggtggaccagctgctgaagcaggctcagcagccggggaggaggaagcggcggcggcgggcgaggagctgcaagagccgggaggacgccgagagccagcggatgacccacattgccgtcgagcgcaaccgccgccgccagatgaacgagtacctcgccgtgctccggtcgctcatgccggagtcctacgtccaccggggcgaccaggcgtccattgtcggcggcgccattgatttcgtgaaggagctcgagcagctgctgcaatccctcgaggcgcagaagcgcacgctgctgatgcagccgccgccgccaccgcagcagcagcgggagcccaagtgtgatgccgcggactccacgagcgcggccgatcaggagactccggcggcggcggcggcggatggaccgccgttcgcgcggttcttcacgtacccgcagtacgtgtggtgccacaacccggcgcaggacggcggcgggggcgggggcgcggcggcggagaaccgcgccggagtggcggacatcgaggtgagccttgtggagacgcacgccagcatccgggtgatggcggcgcggcggccggggcagctgctcaagatggtcgccggcctgcaggcgctccggctcaccgtcctccacctcaacgtcacggccctcggctcgcttgccctctactccatcagcgtcaagagattccatggcggaaaggccattgcttcccttggccccttgggtgtgttctttctctgtgctctgtatctgtggtacagtactacagtggtaagagtggaggaagggtgcggcatggcgacggtggacgacatcgcagcggcggtgcaccacgtgctctgcatcatcgacgccgaggcggcgtcgcagatgctgctcgccggggaggcctccggttag
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| Protein seq | MALDTLCSAGGDVLIYDTFNASAAAAAAVVPPASFLFGNNNAGGAAGTETRVQVAAGAVPEVDQLLKQAQQPGRRKRRRRARSCKSREDAESQRMTHIAVERNRRRQMNEYLAVLRSLMPESYVHRGDQASIVGGAIDFVKELEQLLQSLEAQKRTLLMQPPPPPQQQREPKCDAADSTSAADQETPAAAAADGPPFARFFTYPQYVWCHNPAQDGGGGGGAAAENRAGVADIEVSLVETHASIRVMAARRPGQLLKMVAGLQALRLTVLHLNVTALGSLALYSISVKRFHGGKAIASLGPLGVFFLCALYLWYSTTVVRVEEGCGMATVDDIAAAVHHVLCIIDAEAASQMLLAGEASG |
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| Function | Transcription factor bHLH96 [UniProtKB/Swiss-Prot:Q9C7T4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0024400 | OsGoSa_04g0024400.01 | Chr04 | 32121173 | 32124706 | + | NAM | ||
| CDS seq | atggcgcttgacaccctgtgcagcgccggcggcgacgtcctcatctacgacacgttcaacgcctccgccgcggcggcggcggcggttgtgccgccggcgagcttcctcttcgggaataataatgccggcggcgcggcggggacggagacgagggtgcaggtggcggccggggcggtgccggaggtggaccagctgctgaagcaggctcagcagccggggaggaggaagcggcggcggcgggcgaggagctgcaagagccgggaggacgccgagagccagcggatgacccacattgccgtcgagcgcaaccgccgccgccagatgaacgagtacctcgccgtgctccggtcgctcatgccggagtcctacgtccaccggggcgaccaggcgtccattgtcggcggcgccattgatttcgtgaaggagctcgagcagctgctgcaatccctcgaggcgcagaagcgcacgctgctgatgcagccgccgccgccaccgcagcagcagcgggagcccaagtgtgatgccgcggactccacgagcgcggccgatcaggagactccggcggcggcggcggcggatggaccgccgttcgcgcggttcttcacgtacccgcagtacgtgtggtgccacaacccggcgcaggacggcggcgggggcgggggcgcggcggcggagaaccgcgccggagtggcggacatcgaggtgagccttgtggagacgcacgccagcatccgggtgatggcggcgcggcggccggggcagctgctcaagatggtcgccggcctgcaggcgctccggctcaccgtcctccacctcaacgtcacggccctcggctcgcttgccctctactccatcagcgtcaagagattccatggcggaaaggccattgcttcccttggccccttgggtgtgttctttctctgtgctctgtatctgtggtacagtactacagtggtaagagtggaggaagggtgcggcatggcgacggtggacgacatcgcagcggcggtgcaccacgtgctctgcatcatcgacgccgaggcggcgtcgcagatgctgctcgccggggaggcctccggttag
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| Protein seq | MALDTLCSAGGDVLIYDTFNASAAAAAAVVPPASFLFGNNNAGGAAGTETRVQVAAGAVPEVDQLLKQAQQPGRRKRRRRARSCKSREDAESQRMTHIAVERNRRRQMNEYLAVLRSLMPESYVHRGDQASIVGGAIDFVKELEQLLQSLEAQKRTLLMQPPPPPQQQREPKCDAADSTSAADQETPAAAAADGPPFARFFTYPQYVWCHNPAQDGGGGGGAAAENRAGVADIEVSLVETHASIRVMAARRPGQLLKMVAGLQALRLTVLHLNVTALGSLALYSISVKRFHGGKAIASLGPLGVFFLCALYLWYSTTVVRVEEGCGMATVDDIAAAVHHVLCIIDAEAASQMLLAGEASG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0590800 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g50090 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0590800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024830 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025250 | RBH | 0.0 | 0.0 | 0.358989 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025020 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025240 | RBH | 0.0 | 0.0 | 0.773955 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0472000 | RBH | 0.8895915 | 0.2056075 | 1.3143185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024020 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0475200 | RBH | 0.4767465 | 0.0508105 | 9.537774 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024260 | RBH | 0.0 | 0.0 | 0.183007 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024150 | RBH | 0.0 | 0.0 | 0.000000 |
