Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0005340 | OGI:04031490 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:10541413-10546875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatacgctgtaggccatagccaacgccacggcccatctgttgcgccaactgatgtctgatggtggtgggtaggaccgtgtgtggatgggattaaaaggctatctgaattataacatctgatttggatatatctcaattcggtttgaagtttttcatctggatggttctttcttagctactcgtttccatatttataaccaacataaaaagcatatgtactaattttgtatagacctcttgtcataaatgaactggaatcactgttgtgaggcagcaaatgccaactttgaatttgaataatggaattttagtcgaatttgaatcttgagtatcttaatctagcttggcaaagaatggtggcgaaaaacctcctgaaattcatccttaaatgagagaaccaagcatgattatttttatacatatattccctccatactataatagccatctttagctgtgaaaaaataaacctcttgtattattgtctgttctatatgaatctgaactgagccgtagcgagtgaatatactcactgacagggttatggataccacatacctaatagtagttgactaagctcggcagggcccaccacataccatatcttatatggaatcataccttgtatatagaaggagttccagataaggaaagacaaatagagttccatatggaaacgacaaggactacccggattgtatccatattggtctccctagttatacttggacaagggggcatctataggtataaatacaagcccccctaggaggagaggggacataccaacaagccacaagacatactgatcaatataagccaacacacgccaagacaagccgccggatatcgatatcagagataagcctagacaaaccaaatatgatgtctgtggaggccaacaagagggatctagtgctatctctgatctcgccgagtgcggattcaaggaggaagactacccttttgtcgactacgagttggttatccatgccgccaagtcgacgacaactagataagttattccaattattgtactggtgtgattatgatgaataagagcaacaccggcttcgaccaacaggagtagggctattacctatcagttaaggggcccgaacctatataaaaatccttatctccatctcttttacctcaatctcacgtataccctagtaccaatgatcccatactatgcaaaataccgtagtcatgatctcaaacgtcgacagtggcgcaccaactagaggagttttggtgcttcaaggtttcgacgagatgggtttaagagatggattctccaacaacaagctactcgacgacttcggctgtggggagtctaccctgaccggaatatgtcttccgacgagatcggaaccatcgtcgtcaacaatttaatctatcaagatcatccaagcctcaagatacggggcgtacctacatatgtcagattatatgatgtcaaacgagtacgcAaaaaggtaattggcagattggttttttaaattaatctactaatttcatagatacatccagcatatatttacaaaaatacgcaatattctatatacaatttactgtacctattgttcagatttatacaatattgtcagatccataatttattatctttacctagagcatgttttttatacaatatctattgtgcgagtgtgcctgatgtttggccgactatggtttaatgctgatttattgctgggcgctcgctctattttcttctatataaatcatgcttgtttacaatttacatgatgtctgatatttagtctgctcgttatatccttataatactagatgattcacgcagtattttgagtacatactcgatattctctgctgtatatatcttgtcttctagataaagtttttcagggacaatttagcactcgagtaggttgtggtcgagtacacccattatcgagaatgttatcgacaaatgcagagttgtcgcacccaacctgccaacgaagctcgacgacctacctcatgtatagcgacggccacggttcgactatttgagaatagggttttaacagataattccttgcaaactttctcagcttgatcacccgatatgattgtgaacagacatccggatatgctataagttgggtatgtgagtcatgctggccacatgagatgcgcatgtaataacgaactctagcacccctataggtaattaagagatgcctagtgtcacgcccagaaattcactagtaatttccgaacatatttgtgcataaaatcctcgtccaggaattagccgaggtacacaaactgacaatttaatatacagattcatcagaataactaaagcaattaacacttactgaagaggcacttagtcctcacaacgaagaaaactgcagcggaaaataaaatctagcgaagctccggctccactcccacaggcagctcaactggcgtataagccaaacgtcttctccttctggatcctttttcttcaactgaggtttgattgattattgcaaggtgggtatatggaatactccgcaagccacacatcaaatatgcaagtgcacaaggataccaaaagatagcataatataggctcatttgcaaaagtagcatttagcaaacatttaagagtagtaaaacaatagagtaattaatcatcaattttaatcaacactgcacaacaccccaatgctgcacaggcccaaccatcctgaacaatcatacccagctatacagatttaactccaaaccaggagctaagcaaattattaccaattacagcatcaataattattgtgagaggtgtgagactaatcacaaaaaacattgctcaacccgcccatgaccgcgggcacggctattcgaatagttttactctggccagaggtgtaccactgtacccacaagacacagcctcaacatcatgtctaccatgcgtcacgatactggaaagtacccgaatagaggctgtaacaataccctctgcacaacacaactcaccacagtgcaccgttcatggatcataatcacccccttaataaccagaggcatggactccccagcgacccctatggacttctcgccgcttctcagtctggcaccccgtaataaaccatgttgtacagaagatatagccgttgcccacgctggcttgtggttggcacggttaatgtctcacaacagtagctcgcgaactggtccttaattgtcactagtgaacgtgcacgtgcaaggcacgttatcgtaatatgtactattgcaaataaaaaaatatcaattattaagtgatagttacaaaataacttatcccttctataaaaaaaatgcaattgtagaacaatgttgtcgccttagcaatctgcaatcaacaaattaatgtttcatgactctattggatacatgtgagatccctagcccctagctagatatgtgaagtaaaagcatgtagggtttctttcataaacaacacaagggaaaagaaatcagatttgatctttatgagctttcatcttgtcaaattcagtgtcctatactctcatttgatcatacaagattatgtaagatttctttcatAaaaaacaaaaggaaaacaaaatcagatttgatccttatgggctttcaccttgttaaattcagtgtcctatacttcaaaatggtatctttttgctgcctaaagcaaatcctgatgcacattccagttcttgaaaatgttgcaaatatatgtaacttatgattttttttttcaaaagggaaaaagtcagtatcaacatttgctttagacttacgatgctattgtcattatgatcatcatgattcctggtgtttttaggaaaaataaacacagtataatgatctagatttacctacaaaatatcagcatccatatagaaaaataaatgtaaagttggatcatgtcatcctgcagttatagaaccaattgggcaatttatcaaacttgggaagcacgaataagagagcatatttatatgctttttagtgcatgtacaattcatacaacagaagttaaacagcattatatttgccaatatattcttgagaagttaaatgcatttcctttgtagctagaagtgctaatctcgtccctttcctatgtggtctttctcataaagactcaccagagatggttgcagcagtgattattctaaacttatgtcatcttaccaggattccgatccagcaagctcatttttgccacataattcctcatatttgagctccctttggtgcatctgcttgttgccctccaaacctatggctagaggagccaccatcccgagggtcctagctagttagattttcgttctgtgaaacaaaaattaccagagagcatcatcatatgctgcatttgatagtagttcgcagcccatccatgattaacaatgtatatcagcaccgaagggattcacccaaaactggccaagatgaaaagaacaaaaagcttgcattaccatcttccgaggacgcgaaggcagcagtcatcatcctcgtggtggtggcgattgtgcgacggcaaggtaattgtaaggtagctgctgctcctcgctggagtagcccttataccccgaaggagaatggtttggcaacaagaacctgaatcaatcagggagtcaggcaaaatttcaacaacatttctgcactgtcagatgtgcttccaaatcggttcagctgacgccacctcactggcccggtcgcctcattacatggaggatcaccgcagtaggggatgtcttgcgtgaggaggatcagcgctgcctgggtagccttgtcatgggtaggatagtcgctaccaggatcaccatgtatataacaatcaaaaagttacctcgatattggcctttgttacagtgtcctcttctctcctccAaaaaaaaaaatcaagtatatcgaaagtaatgaaaaaaatgcataaagattttgttcatttaaattaactaatagaatgtgcattcaagggaaaacctattttctaaatatcatgccagcacacacatctacattcaaaggaaagcaacctaagccatcaaccttttagaggatccatcaatttataataaaggtttaccgtccaaaacatggaatatttcatagtctagaatttaattcaacaaaatatgaactatgtataaatttaattaccgagcagtggcatcataactggcaactgcaacaactaaacataataattccgttaaaaaggtgaatatgacacgtaagtgcaacaactaaacataactaccattctacaaagggtctataacagtgcatgctaacctctactgattaaacaaaagaatttaaccacaagcacccccattatttgcaacagagaatactgcaataagtaggtgtgcatttgtacctcagattaagagcattgctgatctgctgatcttcactaaaatgaatgtcacaaatcatactctttaaacacctctcaattg
More
|
||||||||||
| CDS seq | atgatgactgctgccttcgcgtcctcggaagatgctaggaccctcgggatggtggctcctctagccataggtttggagggcaacaagcagatgcaccaaagggagctcaaatatgaggaattatgtggcaaaaatgagcttgctggatcggaatcctggaatcatgatgatcataatgacaatagcatcccttttaatcccatccacacacggtcctacccaccaccatcagacatcagttggcgcaacagatgggccgtggcgttggctatggcctacagcgtataa |
||||||||||
| Protein seq | MMTAAFASSEDARTLGMVAPLAIGLEGNKQMHQRELKYEELCGKNELAGSESWNHDDHNDNSIPFNPIHTRSYPPPSDISWRNRWAVALAMAYSV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0005340 | OsGoSa_04g0005340.02 | Chr04 | 10541413 | 10546310 | - | NAM | ||
| CDS seq | atgatgactgctgccttcgcgtcctcggaagatgctaggaccctcgggatggtggctcctctagccataggtttggagggcaacaagcagatgcaccaaagggagctcaaatatgaggaattatgtggcaaaaatgagcttgctggatcggaatcctggaatcatgatgatcataatgacaatagcatcccttttaatcccatccacacacggtcctacccaccaccatcagacatcagttggcgcaacagatgggccgtggcgttggctatggcctacagcgtataa
More
|
|||||||
| Protein seq | MMTAAFASSEDARTLGMVAPLAIGLEGNKQMHQRELKYEELCGKNELAGSESWNHDDHNDNSIPFNPIHTRSYPPPSDISWRNRWAVALAMAYSV |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0005340 | OsGoSa_04g0005340.01 | Chr04 | 10545575 | 10546875 | - | NAM | ||
| CDS seq | atgatttgtgacattcattttagtgaagatcagcagatcagcaatgctcttaatctgagcgactatcctacccatgacaaggctacccaggcagcgctgatcctcctcacgcaagacatcccctactgcggtgatcctccatgtaatgaggcgaccgggccagttcttgttgccaaaccattctccttcggggtataa |
|||||||
| Protein seq | MICDIHFSEDQQISNALNLSDYPTHDKATQAALILLTQDIPYCGDPPCNEATGPVLVAKPFSFGV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 10545719 | 10545883 | - | OsGoSa_04g0005340.01 | OsGoSa_04g0005340.02,OsGoSa_04g0005340.01 | All |
| A5 | Chr04 | 10546024 | 10546115 | - | OsGoSa_04g0005340.02 | OsGoSa_04g0005340.02,OsGoSa_04g0005340.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 15.071935 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g17730 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005740 | RBH | 0.000000 | 1.727597 | 1.601805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005360 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005360 | RBH | 4.218020 | 0.0 | 7.062851 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0145000 | RBH | 0.6874895 | 3.346876 | 2.9028235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005430 | RBH | 0.0 | 0.000000 | 0.341841 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0157400 | RBH | 0.7667755 | 4.2163315 | 5.3432005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005240 | RBH | 0.205861 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005570 | RBH | 0.403054 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005160 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005470 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
