Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g17730 | OGI:04031490 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9714196-9715676 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATCACAAAAAACATTGCTCAACCCGCCCATGACCGCTGGCACGGCTATTCGAATAGTTTTACTCTGGCCAGAGGTGTACCACTGTACCCACAAGACACAGCCTCAACATCATGTCTACCATGCGTCACGATACTGGAAAGTACCCGAATAGAGGCTGTAACAATACCCTCTGCACAACACAACTCACCACAGTGCACCGTTCCTGGATCATAATCACCCCCTTAATAACTAGAGGCATGGACTCCCCAGCGACCCCTATGGACTTCTCGCCGCTTCTCAGTCTGGCACCCCGTAATAAACCATGTTGTACAGAAGATATAGCCGTTGCCCACGCTGGCTTGTGGTTGGCACGGTTAATGTCTCACAACAGTAGCTCGCGAACCGGTCCTTAATTGTCACTAGTGAACGTGCACGTGCAAGGCACGTTATCGTAATATGTATTATTGCAAATAAAAAAATATCAATTATTAAGTGATAGTTACAAAATAACTTATCCCTTCTATAAAAAAAATGCAATTGTAGAACAATGTTGTCGCCTTAGCATTCTGCAACCAACAAATTAATGTTTCATGACTCTATTGGATACATGTGAGATCCCTAGCCCCTAGCTAGATATGTGAAGTAAAAGCATGTAGGGTTTCTTTCATAAACAACACAAGGGAAAAGAAATCAGATTTGATCTTTATGAGCTTTCATCTTGTCAAATTCAGTGTCCTATACTCTCATTTGATCATACAAGATTATGTAAGATTTCTTTCATAAAAAACAAAAGGAAAACAAAATCAGATTTGATCCTTATGGGCTTTCACCTTGTTAAATTCAGTGTCCTATACTTCAAAATGGTATCTTTTTGCTGCCTAAAGCAAATCCTGATGCACATTCCAGTTCTTGAAAATGTCGCAAATATATGTAACTTATGATTTTTTTTTCAAAAGGGAAAAAGTCAGTATCAACATTTGCTTTAGACTTACGATGCTATTGTCATTATGATCATCATGATTCCTGGTGTTTTTAGGAAAAATAAACACAGTATAATGATCTAGATTTACCTACAAAATATCAGCATCCATATAGAAAAATAAATGTATAGTTGGATCATGTCATCCTGCAGTTATAGAACCAATTGGGCAATTTATCAAACTTGGGAAGCACGAATAAGAGAGCATATTTATATGCTTTTTAGTGCATGTACAATTCATACAACAGAAGTTAAACAGCATTATATTTGCCAATATATTCTTGAGAAGTTAAATACATTTCCTTTGTAGCTAGAAGTGCTAATCTCGTCCCTTTCCTATGTGGTCTTTCTCATAAAGACTCACCAGAGATGGTTGCAGCAGTGATTATTCTAAACTTATGTCATCTTACCAGGATTCCGATCCAGCAAGCTCATTTTTGCCACATAATTCCTCATATTTGAGCTCCCTTTGGTGCATCTGCTTGTTGCCCTCCAAACCTATGGCTAGAGGAGCCACCAT
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| CDS seq | ATGGTGGCTCCTCTAGCCATAGGTTTGGAGGGCAACAAGCAGATGCACCAAAGGGAGCTCAAATATGAGGAATTATGTGGCAAAAATGAGCTTGCTGGATCGGAATCCTGGAATCATGATGATCATAATGACAATAGCATCTGGTACACCTCTGGCCAGAGTAAAACTATTCGAATAGCCGTGCCAGCGGTCATGGGCGGGTTGAGCAATGTTTTTTGTGATTAG |
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| Protein seq | MVAPLAIGLEGNKQMHQRELKYEELCGKNELAGSESWNHDDHNDNSIWYTSGQSKTIRIAVPAVMGGLSNVFCD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g17730 | LOC_Os04g17730.1 | Chr04 | 9714196 | 9715676 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGCTCCTCTAGCCATAGGTTTGGAGGGCAACAAGCAGATGCACCAAAGGGAGCTCAAATATGAGGAATTATGTGGCAAAAATGAGCTTGCTGGATCGGAATCCTGGAATCATGATGATCATAATGACAATAGCATCTGGTACACCTCTGGCCAGAGTAAAACTATTCGAATAGCCGTGCCAGCGGTCATGGGCGGGTTGAGCAATGTTTTTTGTGATTAG
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| Protein seq | MVAPLAIGLEGNKQMHQRELKYEELCGKNELAGSESWNHDDHNDNSIWYTSGQSKTIRIAVPAVMGGLSNVFCD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g29060 | RBH | 0.609986 | 0.486225 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005740 | RBH | 0.000000 | 1.727597 | 1.601805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005360 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005360 | RBH | 4.218020 | 0.0 | 7.062851 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0145000 | RBH | 0.6874895 | 3.346876 | 2.9028235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005430 | RBH | 0.0 | 0.000000 | 0.341841 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0157400 | RBH | 0.7667755 | 4.2163315 | 5.3432005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005240 | RBH | 0.205861 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005570 | RBH | 0.403054 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005340 | RBH | 15.071935 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005160 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005470 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
