Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0001040 | OGI:04003980 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:1307866-1308840 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catcgatcttgtggataagagattctgaagctagggtgctatccatctagcaatcgagcttcttcagcaaaactacAaaagaacactatgtcgagcaacgtggattcaaagacatccaacaaagcctcctatcctcttgcatcttaagccattgaaacaacagcagctcaatcccaacatatttactcttcttaccttctccattgcatatataatagacacagctagctttgttgtaccattgaatcaatcatcaattttgcagcaatagctagacaatcagcgagacaaagtcacaaaaccatggcttctgcagatgctatcctgtcttcgcaggtggccggcgaatgcctgaagatcaacaaggtcagtcagtcacttcttctcactcaaatcaacaaagattcttcacgaatatatatacatatattcttgatcttgcacatgctgctgctgttgctgttcttgctcgattaggaccattttacatctgttgatttcttgtgattttgcagctggcagcagcaagcccagtgaaagtagtgcaggtgcagaagccgagcaaagagacgaagaacatcagcggtgcacctgtagctgccgctgccgtcaaggtggttgtgagcaagcaagtgatgaagccacggtttgccgtggagctggatGggctcaactgcttcgagacacttgtccctcgctgatgatatcatgaagcgcacacacgagctgctagctgtgttccatctgatttgttgattttctggtcattatttttgcggggttatattatatttgttcaaattttctatgagttggatcctttcgcacgcgcgattatgtattttctttctttgaagtgatatgtataatttgctcttacgagtgattccgactgtgaagtattatttgttatataaagatatacgtgctattgatatctcagaggttataataaggttgggAaacgatttttct
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| CDS seq | atggcttctgcagatgctatcctgtcttcgcaggtggccggcgaatgcctgaagatcaacaagctggcagcagcaagcccagtgaaagtagtgcaggtgcagaagccgagcaaagagacgaagaacatcagcggtgcacctgtagctgccgctgccgtcaaggtggttgtgagcaagcaagtgatgaagccacggtttgccgtggagctggatGggctcaactgcttcgagacacttgtccctcgctga |
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| Protein seq | MASADAILSSQVAGECLKINKLAAASPVKVVQVQKPSKETKNISGAPVAAAAVKVVVSKQVMKPRFAVELDGLNCFETLVPR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0001040 | OsGoSa_04g0001040.01 | Chr04 | 1307866 | 1308840 | + | NAM | ||
| CDS seq | atggcttctgcagatgctatcctgtcttcgcaggtggccggcgaatgcctgaagatcaacaagctggcagcagcaagcccagtgaaagtagtgcaggtgcagaagccgagcaaagagacgaagaacatcagcggtgcacctgtagctgccgctgccgtcaaggtggttgtgagcaagcaagtgatgaagccacggtttgccgtggagctggatGggctcaactgcttcgagacacttgtccctcgctga
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| Protein seq | MASADAILSSQVAGECLKINKLAAASPVKVVQVQKPSKETKNISGAPVAAAAVKVVVSKQVMKPRFAVELDGLNCFETLVPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.333405 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0119000 | RBH | 12.152904 | 10.292872 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02880 | RBH | 5.828524 | 4.960812 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0119000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000940 | RBH | 2.038879 | 6.626598 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000890 | RBH | 0.388303 | 0.0 | 1.157467 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000960 | RBH | 7.666358 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001000 | RBH | 1.425053 | 0.062994 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000960 | RBH | 8.980208 | 0.0 | 1.385732 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0022900 | RBH | 32.5713555 | 9.220985 | 1.574853 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001070 | RBH | 0.426772 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0022400 | RBH | 24.233801 | 0 | 0.129352 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000940 | SBH | 0.000000 | 0.087714 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001030 | RBH | 0.220824 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000900 | RBH | 3.438964 | 0.0 | 0.715358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001070 | RBH | 3.649533 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001000 | RBH | 1.042891 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001080 | RBH | 4.472936 | 18.786455 | 0.000000 |
