Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0009380 | OGI:03017930 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:6999163-7003350 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaccatcgcaatgccggacctccctcatcctcgcaacggaacagcgaggacgcaccactgcaccgccggactagcgccgaggttcgcgttccctcctttataagccaggtcgccccacgccgttgcaatcagcgcaccagcggccgagggctccgtaggtgtcgctgcctccggggcggctccgtcgtcgccaccgcaatcgggcccgctggtctagggtttcgttggtgccacagccccgtcgctgaccggtggtccagccttccgccagcgccgctgctccattgctctccgctggtccagccttcggtcgtacctccggtcttgccgctgacacgaggggcatagtagaccgcaggtacttctagctgtaagtcaaaatttcttctgctcctgagatcgagtgagacactcaaattgactcttctgaatccccattagtcttctgtgtggattttcttattcagctgaagggtatgcacatatattaaatctctcctcttaatggtgtgattcggttcttatcgatccatatgtgcatcattgcaggctatatcctatcaaggtgattggtgttgctccatacagactaacattgtagacttgtagttgccatgctgaatctcttccagattattttatacagaaattttattgtacaggtttgagaattgttcaagttcgatcagattaaggggatcgactcacttttgagaattcatagattcatttgtttagtactttagttcttgagcacagattattgtgagccttcatccatgaataaattatatatatgttcagtcattcacaaagtgattatctaacctgagtactctgtgatatagcagttcatgtgtgttaccttccttttttctgttgtctaatttagatcaatgcatgactggttagacggtgatgcatcaggcggtggctggccggacgggtgctaggcaagagccagtgtgcagctgatcggtataatgggtatttgccggttttaattctttctcccatttggttcaattttccttgttataacaaaccattcttttttacctctggcaaagaaagctaatttgcacaaaaatggaggatacaacatttttgctactcaaggatgcggttgaagttgaaaagttggtttcattgattattcctgggaacatgaaatgtttatattttatttttcttagcctaataaaaagcaaatcttaatttctgatttaatgtgatactgcaatccaccatttgatttctttagctaggcatactataaaacggccatgatacaagcttatacagatatgctgaagataggggtgaacaggatggaaggcatttttattaggcccttgtcagatggcttttggctttaagatgctctatgaggaaggtcaaggggattttgttattttatttttcattgattggcctttggttgatatatatgaattaatatactccataggcacaacaaaaaggtaatattaatatatgcagaattatttctttgctttaagtttttactatttttactatggttactacttattggtcactggtcagataagggtacatgcatatatttttgtgtactataaacttattagagaaactcagcttagtgtatgcaagggtaaaggcatggaacaactctgattctgaataggaataacttcttcctttttctgggctaggaatttgagtgtttactttttcattaccaaggcttatatgctcctagctagcagctgctggtgatttgacaagttttggtgattttgtcctaatgcttcaaattttgttttgggtagatccaaggacaaatatattctccaaacagatgaacttttgttaaagatAaaaaaatatattttattttgaagcacaaaatgtgctataaccccaacctgaacattttactgaagcgattactgtaactagttcattttgtctgctcgctgaactctacccaaccatgtttgttgttgctccaaccaaaatcaggaggctttatggtctttgtgtgccatacaactttatatatgaatttgaatttagttttacatggtctgaacttgggcttgcattgctcaagaacttggttgacaacattctgaaattggcctcgcattatatggcatcctgtgtagtgtaatgtattgtttctattcaacataaacatgcatagtttccctgtgaactattggttatatactgagttaataattcctgacagcctttagaaatgtggaacacTttttttttaacaatttcagtacaaatttcctgggagcaaaaaattgtcaatcacatctcatgttgtgtcctccaaaaaaaaagttctaattttctgtcgtgctgatgacaaattctttatatatacctcaaacgtgtgcactatagatgtcgaatatttgccaggttagtgtttgaacatttcttatattattttctgagcatttggcatattagttttcgacttgtccttatgatgtaggagtatctgaattaagaatctgaacttcgacaaacatctaaatattgttcaatgttttaatttgctgtgagctaattaatgttatgaatttcttatagctcaagtactggaagtttagaaattcaccagtcgatgtaagaTttgtgtgggtttagtgtctgaccttggcccttgcaatgtgtgtaaacaatatactcctattaccatttaaggttgaacatggaatgtatcttttttttatgaactacatggaatgtatctgaattcagtgtgtcatgtttctggagttaagtgtatgaatatggcactgtttttccccatacttttactttttaaaatatacattgtaaaaacgtgccttgcacgtgcattactagtcctaaaaaaatgtcttactccaagggcctgcttggaaggcctgtatttggcccaaaaccggtataagttacaggcccataatttttttccaaggataaactcaaaacgctgcttggatgggccgtaacctattatatttccaggtgttttcggcccattcggacgaaaaggtaatgtgggctagagatgtcacattttttgggggtaaatatcgagctcaatccactcagccttcaactccggcctcaagttacgcaaccacatagagcgtgttattggaatcctgaagatgtgatttccaatcctagaagttgcaacattttatccaatcgcaacccaagtgataatccttgcagttgcaatagtcctccataacataatcaggagccaaaaaggtgatgataagtggttagttcagaagaaacttgttccagtacatgagtggacttatatggagatgatgtagcaccaatgaatagtcaaagacacttgggaaataagctaagggacaagattgcaaagaatatgtgggctgaccaccgaagaatgagagagcgtagggtgcaaagaagagcttcttgaattctcataacacttgaacatctcaagcgtagtgtgattttcttttcatgttgaactttttattatttgtaataaagcaaacatgtttggatatgttccacattatttgaatatatcttgatgttttgaattattttgaatgtgttgatgttctagattatttgaatatgttattatatcatgaacaatatcttcgttcaacatttcttgtgatctgttatagatcagatggctcaaagagcaaggtgaacattgaaatatgagaaggcattggtggatctacttatggagtacaacgtctctcattatcgagggcaaaatagttggtgtatagagggcttgaataaaatagtgatggatttcaacaagttattccaagaagctaaatttaccgagaggctcaaatacaggacaaataaacccaaccgaagaaagacttcaaagcaattaaatccattcaaagtcgtggtggcTtttcttgggaccaaaatgtgtcgatgattaaaaccacatttgaaaaatgggaagcgatcatcgaggctagattgtacttattttgaattcagaatttaatcttgtgcatcagtaatcttgacccttctataaatatataggaagatcagaagttgaagaggcatgagaacaaaagtttcccattgtttgagtgcttggatcaattgtatgaaggtaggacatacctttttctctatttgatattttga
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| CDS seq | atgcaccatcgcaatgccggacctccctcatcctcgcaacggaacagcgaggacgcaccactgcaccgccggactagcgccgaggttcgcgttccctcctttataagccaggtcgccccacgccgttgcaatcagcgcaccagcggccgagggctccgtaggtgtcgctgcctccggggcggctccgtcgtcgccaccgcaatcgggcccgctggtctagggtttcgttggtgccacagccccgtcgctgaccggtggtccagccttccgccagcgccgctgctccattgctctccgctggtccagccttcggtcgtacctccgacggtgatgcatcaggcggtggctggccggacgggtgctaggcaagagccactcaagtactggaagtttagaaattcaccagtcgatgaagatcagaagttgaagaggcatgagaacaaaagtttcccattgtttgagtgcttggatcaattgtatgaaggtaggacatacctttttctctatttgatattttga
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| Protein seq | MHHRNAGPPSSSQRNSEDAPLHRRTSAEVRVPSFISQVAPRRCNQRTSGRGLRRCRCLRGGSVVATAIGPAGLGFRWCHSPVADRWSSLPPAPLLHCSPLVQPSVVPPTVMHQAVAGRTGARQEPLKYWKFRNSPVDEDQKLKRHENKSFPLFECLDQLYEGRTYLFLYLIF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0009380 | OsGoSa_03g0009380.01 | Chr03 | 6999163 | 7003350 | + | NAM | ||
| CDS seq | atgcaccatcgcaatgccggacctccctcatcctcgcaacggaacagcgaggacgcaccactgcaccgccggactagcgccgaggttcgcgttccctcctttataagccaggtcgccccacgccgttgcaatcagcgcaccagcggccgagggctccgtaggtgtcgctgcctccggggcggctccgtcgtcgccaccgcaatcgggcccgctggtctagggtttcgttggtgccacagccccgtcgctgaccggtggtccagccttccgccagcgccgctgctccattgctctccgctggtccagccttcggtcgtacctccgacggtgatgcatcaggcggtggctggccggacgggtgctaggcaagagccactcaagtactggaagtttagaaattcaccagtcgatgaagatcagaagttgaagaggcatgagaacaaaagtttcccattgtttgagtgcttggatcaattgtatgaaggtaggacatacctttttctctatttgatattttga
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| Protein seq | MHHRNAGPPSSSQRNSEDAPLHRRTSAEVRVPSFISQVAPRRCNQRTSGRGLRRCRCLRGGSVVATAIGPAGLGFRWCHSPVADRWSSLPPAPLLHCSPLVQPSVVPPTVMHQAVAGRTGARQEPLKYWKFRNSPVDEDQKLKRHENKSFPLFECLDQLYEGRTYLFLYLIF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0229000 | RBH | 0.347796 | 1.188200 | 0.419632 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12750 | SBH | 0.000000 | 0.522144 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0229000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009620 | RBH | 0.458488 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009480 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009550 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009470 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009350 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0112700 | RBH | 0.2060035 | 0.366127 | 0.328701 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009280 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0112600 | RBH | 1.236314 | 2.726511 | 5.448237 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009360 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009440 | RBH | 0.049558 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009420 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009380 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009260 | RBH | 0.132924 | 0.0 | 0.000000 |
