Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g12750 | OGI:03017930 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:6816149-6819144 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAAGGCATTTTTATAGGCCCTTGTCAGATGGCTTTTGGCTTTAAGATGCTCTATGAGGAAGGTCAAGGGGATTTTGTTATTTTATTTTTCATTGATTGGCCTTTGGTTGATATATATGAATTAATATACTCCATAGGCACAACAAAAAGGTAATATTAATATATGCAGAATTATTTCTTTGCTTTAAGTTTTTACTATTTTTACTATGGTTACTACTTATTGGTCACTGGTCAGATAAGGGTACATGCATATATTTTTGTGTACTATAAACTTATTAGAGAAACTCAGCTTAGTGTATGCAAGGGTAAAGGCATGGAACAACTCTGATTCTGAATAGGAATAACTTCTTCCTTTTTCTGGGCTAGGAATTTGAGTGTTTACTTTTTCATTACCAAGGCTTATATGCTCCTAGCTAGCAGCTGCTGGTGATTTGACAAGTTTTGGTGATTTTGTCCTAATGCTTCAAATTTTGTTTTGGGTAGATCCAAGGACAAATATATTCTCCAAACAGATGAACTTTTGTTAAAGATAAAAAATATATTTTATTTTGAAGCACAAAATGTGCTATAACCCCAACCTGAACATTTTACTGAAGCGATTACTGTAACAAGTTCATTTTGTCTGCTCGCTGAACTCTACCCAACCATGTTTGTTGTTGCTCCAACCAAAATCAGGAGGCTTTATGGTCTTTGTGTGCCATACAACTTTATATATGAATTTGAATTTAGTTTTACATGGTCTGAACTTGGGCTTGCATTGCTCAAGAACTTGGTTGACAACATTCTGAAATTGGCCTCGCATTATATGGCATCCTGTGTAGTGTAATGTATTGTTTCTATTCAACATAAACATGCATAGTTTCCCTGTGAACTATTGGTTATGTACTGAGTTAATAATTCCTGACAGCCTTTAGAAATGTGGAACACTTTTATTTTTAACAATTTCAGTACAAATTTCCTGGGAGCAAAAAATTGTCAATCACATCTCATGTTGTGTCCTCCAAAAAAAAAGTTCTAATTTTCTGTCGTGCTGATGACAAATTCTTTATATATACCTCAAACGTGTGCACTATAGATGTCGAACATTTGCCAGGTTAGTGTTTGAACATTTCTTATATTATTTTCTGAGCATTTGGCATATTAGTTTTCGACTTGTCCTTATGATGTAGGAGTATCTGAATTAAGAATCTGAACTTCGACAAACATCTAAATATTGTTCAATGTTTTAATTTGCTGTGAGCTAATTAATGTTATGAATTTCTTATAGCTCAAGTACTGGAAGTTTAGAAATTCACCAGTCGATGTAAGATTTGTGTGGGTTTAGTGTCTGAACATGGAATATACTCCTATTACCATTTAAGGTTGAACATGGAATGTATCTTTTTTTTATGAACTACATGGAATGTATCTGAATTCAGTGTGTCATGTTTCTGGAGTTAAGTGTATGAATATGGCACTGTTTTTCCCCATACTTTTACTTTTTAAAATATACATTGTAAAAACGTGCCTTGCACGTGCATTACTAGTCCTAAAAAAATGTCTTACTCCAAGGGCCTGCTTGGAAGGCCTGTATTTGGCCCAAAACCGGTATAAGTTACAGGCCCATAATTTTTTTCCAAGGATAAACTCAAAACGCTGCTTGGATGGGCCGTAACCTATTATATTTCCAGGCGTTTTCGGCCCATTCCGACGAAAAGGTAATGTGGGCTAGAGATGTCACATTTTTTGGGGGTAAATATCGAGCTCAATCCACTCAGCCTTCAACTCCGGCCTCAAGTTACGCAACCACATAGAGCGTGTTATTGGAATCCTGAAGATGTGATTTCCAATCCTAGAAGTTGCAACATTTTATCCAATCGCAACCCAAGTGATAATCCTTGCAGTTGCAATAGTCCTCCATAACATAATCAGGAGCCAAAAAGGTGATGATAAGTGGTTAGTTCAGAAGAAACTTGTTCCAGTACATGAGTGGACTTATATGGAGATGATGTAGCACCAATGAATAGTCAAAGACACTTGGGAAATAAGCTAAGGGACAAGATTGCAAAGAATATGTGGGCTGACCACCGAAGAATGAGAGAGCGTAGGGTGCAAAGAAGAGCTTCTTGAATTCTCATAACACTTGAACATCTCAAGCGTAGTGTGATTTTCTTTTCATGTTGAACTTTTTATTATTTGTAATAAAGCAAACATGTTTGGATATGTTCCACATTATTTGAATATATCTTGATGTTTTGAATTATTTTGAATGTGTTGATGTTCTAGATTATTTGAATATGTTATTATATCATGAACAATATCTTCGTTCAACATTTCTTGTGATCTGTTATAGATCAGATGGCTCAAAGAGCAAGGTGAACATTGAAATATGAGAATGCATTGGTGGATCTACTTATGGAGTACAACGTCTCTCATTATCGAGGGCAAAATAGTTGGTGTATAGAGGGCTTGAATAAAATAGTGATGGATTTCAACAAGTTATTCCAAGAAGCTAAATTTACCGAGAGGCTCAAATACAGGACAAATAAACCCAACCGAAGAAAGACTTCAAAGCAATTAAATCCATTCAAAGTCGTGGTGGCTTTTCTTGGGACCAAAATGTGTCGATGATTAAAACCACATTTGAAAAATGGGAAGCGATCATCGAGGCTAGATTGTACTTATTTTGAATTCAGAATTTAATCTTGTGCATCAGTAATCTTGACCCTTCTATAAATATATAGGAAGATCAGAAGTTGAAGAGGCATGAGAACAAAAGTTTCCCATTGTTTGAGTGCTTGGATCAATTGTATGAAGGTAGGACATACCTTTTTCTCTATTTGATATTTTGATCTTAAAATACTTATTTTATGACATATATTAACTTAGTGTAACATGTCAATATGTTGAAGGATAGGCTTTACCTCTAGTACATCCAACCATGTCAACCTCAAGGGCAAAGACATGGCAACAACAAATAACATAGCTGAGGAGCGCCTTGTTGACGGTCCTTAA
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| CDS seq | ATGGAAGGCATTTTTATAGGCCCTTGTCAGATGGCTTTTGGCTTTAAGATGCTCTATGAGGAAGGTCAAGGGGATTTTGTTATTTTATTTTTCATTGATTGGCCTTTGGTTGATATATATGAATTAATATACTCCATAGGCACAACAAAAAGCTCAAGTACTGGAAGTTTAGAAATTCACCAGTCGATATCAGATGGCTCAAAGAGCAAGGAAGATCAGAAGTTGAAGAGGCATGAGAACAAAAGTTTCCCATTGTTTGAGTGCTTGGATCAATTGTATGAAGGCTTTACCTCTAGTACATCCAACCATGTCAACCTCAAGGGCAAAGACATGGCAACAACAAATAACATAGCTGAGGAGCGCCTTGTTGACGGTCCTTAA |
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| Protein seq | MEGIFIGPCQMAFGFKMLYEEGQGDFVILFFIDWPLVDIYELIYSIGTTKSSSTGSLEIHQSISDGSKSKEDQKLKRHENKSFPLFECLDQLYEGFTSSTSNHVNLKGKDMATTNNIAEERLVDGP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g12750 | LOC_Os03g12750.1 | Chr03 | 6816149 | 6819144 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAAGGCATTTTTATAGGCCCTTGTCAGATGGCTTTTGGCTTTAAGATGCTCTATGAGGAAGGTCAAGGGGATTTTGTTATTTTATTTTTCATTGATTGGCCTTTGGTTGATATATATGAATTAATATACTCCATAGGCACAACAAAAAGCTCAAGTACTGGAAGTTTAGAAATTCACCAGTCGATATCAGATGGCTCAAAGAGCAAGGAAGATCAGAAGTTGAAGAGGCATGAGAACAAAAGTTTCCCATTGTTTGAGTGCTTGGATCAATTGTATGAAGGCTTTACCTCTAGTACATCCAACCATGTCAACCTCAAGGGCAAAGACATGGCAACAACAAATAACATAGCTGAGGAGCGCCTTGTTGACGGTCCTTAA
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| Protein seq | MEGIFIGPCQMAFGFKMLYEEGQGDFVILFFIDWPLVDIYELIYSIGTTKSSSTGSLEIHQSISDGSKSKEDQKLKRHENKSFPLFECLDQLYEGFTSSTSNHVNLKGKDMATTNNIAEERLVDGP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.522144 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0288101 | RBH | 0.281687 | 1.542717 | 2.195916 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0288101 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013720 | RBH | 0.000000 | 0.000000 | 2.049677 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013540 | RBH | 0.176191 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013560 | RBH | 0.000000 | 0.000000 | 1.305663 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013540 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013370 | RBH | 2.457631 | 5.271906 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0112700 | RBH | 0.2060035 | 0.366127 | 0.328701 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013280 | RBH | 0.000000 | 0.0 | 0.273181 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0013480 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013470 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013540 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013410 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013350 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009380 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009260 | RBH | 0.132924 | 0.0 | 0.000000 |
