Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_03g0002490 OGI:03004840 | 16/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr03:1829129-1833627
Gene Symbol NLP1, OsNLP1
DNA seq

aaaaaaaatcttcacccgtaaaagagcaggtttacacgagcaacatcgaaactactccaacatataaataacattgtattaacaataatgctaacactgatctaaaaacaacagaattcatctcgactttgatgatgatcttgtttcattgccagcactgcaactgctttcttgtgaaccctttcgcttctgcaatatgtgggtgcaagataagcttaccatgcaactaatgagatgaacaaagaaaggaaaaatatacactaatattttcatcaatacttacactggtgggaagacatttcagaattgcaaaaatgctcccatgaaggctgaacagacacgctgtaacgggtaacctgaggcaggcTttcaaatgctgaaaccttgaagtgaacacttgagaactattgagtcagatgaaaccccaaaagagctacaaacttttgaactgtaactgactgctaaatctatcccaaagcttcatttcgacaaatgccaatattttcatcctctgacctactcacctacaattatgtacactagtttagtctgcctacacaaagttcctatggttatgaaactgaacaaaaggcatactgctccatcttctattcccgtggactccactgcatgaacttcagcatgcaaatcaataccaagcaccgacagggaacatcaacaattacttcatttccaattcaagaacacagcacggttcaactgcaacatcaacaggcagctgtccattaatttgcacctcagcccaagtatccaaatctgaagcctgcatacgccatcttgacttacaaccaaaggcagcgtcaggcattctttacctgaaggagcaatgagatgattgttttcagtgctgcaacaccactgtcaagacagaccagtttgaccgaaggaagcattgagcaacggttgaatgctaggattaaccaatattctaactgtttgattacttgatgacttgtatacatcaatacactccagcaggtctgcatcacaggttaaaagaacccactcagattcatcgtccaaatacttgaggtccacgtgagtatcctgagaaatgccgaaccgctttacgatctcttcttttagcctttgaaagccccaactaggctgaagacggaatatacatctttcctcgccatagatggcttttattttgagagaatcagacctagccttttgcacgtttgacatgttttctatcggtttgtgttcacttaaaagtacttgactctgagacctaaatagcatggtaggtctttcttcaacaaacatttgcagctctgcctctgcatggctagcagatttgattagtgtggagcactgattctcatccatagatatttcctctttgactgcaagctgaggagcactaccatgctgttgctgagtctttggaacactggaacaaccaaggctagaatttgagctctggctgcaggatggggagatggaattagagccagaagtatgtgaagtgaatctgccctcacatggacgatcaggaactgaaggttccagctgaaagttttgctcagatgctggaaaatggacatctccttgtaactctctttctgaccatgtggtcttggtaaaattttcatagagtgaactgagctgaactgttccttcaggaccatgtactgaatcaatgaccatttgcaatttcttcagggagtgcccaactttcttgatctttcgtgatggccaacgattaattccatgctgcctgcatattctcttcagtgtagtcgggcacactggaacaaacggtagaaacataagatcaatagtcagccacagatattgcagtttatatctatgcaaatagtgaatgaagcattagtcctatatactttcagttggatctattgcaaaaaccaagacatttgaattatcaattttatctcaattaattacattgtaagttccccgcctgattgtacacctgtcatttttttttatcctggaacttatctgaaagggttacatgcactgtaagcagattattactatgagcaaacttatcccacttcttttgagccatgcttcaaggagataaatgtacaggaaaagctgcaaaaaataattttaaaaaaggtaaggaagccagccatttcagagatcatttgtcattaaaatacctcctaaattctttgcagcttctttcaggctaccagcaaaatgcttccgaagatcttgcaggctaactgttttctccgtcttagtgcgccgtttttctactgctttgtccgagtttgaattgcttggatcactggaacaagtattttctttgacatcataatcttcatgccgcttaaaccctgaaaacatgctaccgtcaggtgccataactggagaagtatgccagccagctgtaacactaaatccttcatcatcttgtttgctgaatccgaatggcaagtcaacatctatttctccctttcctcccttattctgagcatccactaagctcgctatccatgatgatacctcctcagatgcttccaatgatgttgtccttccaggaacattaataccactacagagctcatccaagtcttcatgcacagacttggcataaaattctggcctggttggttgactaatttcaaatggtccatcatttaccagctcttttggcttcacaactcttaatgtatagcatacttgttgtatggtattagataaagaattgagcatggccctttgctcttcagtatttatgcacttcattggcaagaaaaactccaagacaaagtccaggcttccagtcttgacacttcgcagctggatggcaactgctgccctcaagccaaaaagtttggcatgatgcgagagagggtactgggtcttgctgtaggtggtaatgtctggggagaaacatggctcattcgtcccaaatgccctgccgacaacaccctcacctctgaacagatgatgctcggagcaagcctggtgaaagcctaatacggaacaatcacggacataacatgcctcatcaacaGtggacacacaatgtttgtagctttcatcagagtggcggcttcccctcttggcctggcagatgcacggtatccatgtctgggctagtggcagattgtgggtatcacaaacagctctgagaacatccatgatctcaggtataattgctcggtaagaagcatcaacaacctggcatcaagcgggcagcatctgttactgagaacaacatttcagcaaagcactctgatctttaatatctttcatctcaccttggaacgaggatcacttgaaacatcagagctcctgagatcaacttcctgcaattttccacgaaatgtagttttattaagacaaggatgacaccaaggtaggagaagtgaaaagattgattactttggggattggtgtgcccagcagttatcacatcttttcctaatgacatttcatcgaatacgttaagagcataacatggtggcctgcaaagcatgggcatttttttcggctttggagaatcaaatggagcagtgttgcgcaaatctaccttgagagcattgcagatgttctcgatctccgcactgtagttgaccttctgcgtggtcatgacgagctcgacgacgccgaggcaggctcggctccgcggctcgaagaccggcagcgcgacgctgccgcggatgtcgaagtattgcgcgtgctggacgcgcgggtactcctcggtggagaagtagcggacgtccggcgtccactcggggacgcggccgacgaagacccggccggggagccccaggtcggcgcgcgcgctctcgtcggcggagaactggtacttcatcgacaccgtccggtagctggcgaggcgctggttccggcggtccagccagaacggctgcccgcaagtcgtcagcacctgccggtcgccgatccgcgtcggcacccagacctggacgagcagctccccgtcgccccgctgcgcctgcgactgcgactgcgacgcgatgcgctccagcgcgcggcgcagccgctccttcaccgtcggctccacggccacctcctgcggcgccgtctggaacgtccagccgcggtgcgcggggctcacctcgaggccgccgccgccacggctgggcatctccgcctcgtccctgtcgtcctcgccggccgccggcgcGggggtagtcaaggtagtgacgctgctgccgatgtcgaacagcggggagaaggggctcgccgcccccggatgccagaactccgacaaatcgagccccggcgtcgccagcaagaactcctccatgagatccaggtcaccgccggcgatatcccccgtcccgcccatcccgcatcccatcaatccatcctcctcctcgtcgctcctcggcggcggcggcggcgacggcttctgctccatgaccggacaagcaccaccaccaacctcacagccctcgcatacccccaatccgccgaaacgcagccgcgcggaggcgaacaaacacgagccacgaacctgg

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CDS seq

atggagcagaagccgtcgccgccgccgccgccgaggagcgacgaggaggaggatggattgatgggatgcgggatgggcgggacgggggatatcgccggcggtgacctggatctcatggaggagttcttgctggcgacgccggggctcgatttgtcggagttctggcatccgggggcggcgagccccttctccccgctgttcgacatcggcagcagcgtcactaccttgactaccccCgcgccggcggccggcgaggacgacagggacgaggcggagatgcccagccgtggcggcggcggcctcgaggtgagccccgcgcaccgcggctggacgttccagacggcgccgcaggaggtggccgtggagccgacggtgaaggagcggctgcgccgcgcgctggagcgcatcgcgtcgcagtcgcagtcgcaggcgcagcggggcgacggggagctgctcgtccaggtctgggtgccgacgcggatcggcgaccggcaggtgctgacgacttgcgggcagccgttctggctggaccgccggaaccagcgcctcgccagctaccggacggtgtcgatgaagtaccagttctccgccgacgagagcgcgcgcgccgacctggggctccccggccgggtcttcgtcggccgcgtccccgagtggacgccggacgtccgctacttctccaccgaggagtacccgcgcgtccagcacgcgcaatacttcgacatccgcggcagcgtcgcgctgccggtcttcgagccgcggagccgagcctgcctcggcgtcgtcgagctcgtcatgaccacgcagaaggtcaactacagtgcggagatcgagaacatctgcaatgctctcaaggaagttgatctcaggagctctgatgtttcaagtgatcctcgttccaaggttgttgatgcttcttaccgagcaattatacctgagatcatggatgttctcagagctgtttgtgatacccacaatctgccactagcccagacatggataccgtgcatctgccaggccaagaggggaagccgccactctgatgaaagctacaaacattgtgtgtccaCtgttgatgaggcatgttatgtccgtgattgttccgtattaggctttcaccaggcttgctccgagcatcatctgttcagaggtgagggtgttgtcggcagggcatttgggacgaatgagccatgtttctccccagacattaccacctacagcaagacccagtaccctctctcgcatcatgccaaactttttggcttgagggcagcagttgccatccagctgcgaagtgtcaagactggaagcctggactttgtcttggagtttttcttgccaatgaagtgcataaatactgaagagcaaagggccatgctcaattctttatctaataccatacaacaagtatgctatacattaagagttgtgaagccaaaagagctggtaaatgatggaccatttgaaattagtcaaccaaccaggccagaattttatgccaagtctgtgcatgaagacttggatgagctctgtagtggtattaatgttcctggaaggacaacatcattggaagcatctgaggaggtatcatcatggatagcgagcttagtggatgctcagaataagggaggaaagggagaaatagatgttgacttgccattcggattcagcaaacaagatgatgaaggatttagtgttacagctggctggcatacttctccagttatggcacctgacggtagcatgttttcagggtttaagcggcatgaagattatgatgtcaaagaaaatacttgttccagtgatccaagcaattcaaactcggacaaagcagtagaaaaacggcgcactaagacggagaaaacagttagcctgcaagatcttcggaagcattttgctggtagcctgaaagaagctgcaaagaatttaggagtgtgcccgactacactgaagagaatatgcaggcagcatggaattaatcgttggccatcacgaaagatcaagaaagttgggcactccctgaagaaattgcaaatggtcattgattcagtacatggtcctgaaggaacagttcagctcagttcactctatgaaaattttaccaagaccacatggtcagaaagagagttacaaggagatgtccattttccagcatctgagcaaaactttcagctggaaccttcagttcctgatcgtccatgtgagggcagattcacttcacatacttctggctctaattccatctccccatcctgcagccagagctcaaattctagccttggttgttccagtgttccaaagactcagcaacagcatggtagtgctcctcagcttgcagtcaaagaggaaatatctatggatgagaatcagtgctccacactaatcaaatctgctagccatgcagaggcagagctgcaaatgtttgttgaagaaagacctaccatgctatttaggtctcagagtcaagtacttttaagtgaacacaaaccgatagaaaacatgtcaaacgtgcaaaaggctaggtctgattctctcaaaataaaagccatctatggcgaggaaagatgtatattccgtcttcagcctagttggggctttcaaaggctaaaagaagagatcgtaaagcggttcggcatttctcaggatactcacgtggacctcaagtatttggacgatgaatctgagtgggttcttttaacctgtgatgcagacctgctggagtgtattgatgtatacaagtcatcaagtaatcaaacagttagaatattggttaatcctagcattcaaccgttgctcaatgcttccttcggtcaaactggtctgtcttga

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Protein seq

MEQKPSPPPPPRSDEEEDGLMGCGMGGTGDIAGGDLDLMEEFLLATPGLDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGGGGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERIASQSQSQAQRGDGELLVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLASYRTVSMKYQFSADESARADLGLPGRVFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCICQAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSGINVPGRTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAPDGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYENFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHTSGSNSISPSCSQSSNSSLGCSSVPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFRSQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQTGLS

Function Protein NLP1 [UniProtKB/Swiss-Prot:Q10S83]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0002490 OsGoSa_03g0002490.01 Chr03 1829129 1833627 - NAM
CDS seq

atggagcagaagccgtcgccgccgccgccgccgaggagcgacgaggaggaggatggattgatgggatgcgggatgggcgggacgggggatatcgccggcggtgacctggatctcatggaggagttcttgctggcgacgccggggctcgatttgtcggagttctggcatccgggggcggcgagccccttctccccgctgttcgacatcggcagcagcgtcactaccttgactaccccCgcgccggcggccggcgaggacgacagggacgaggcggagatgcccagccgtggcggcggcggcctcgaggtgagccccgcgcaccgcggctggacgttccagacggcgccgcaggaggtggccgtggagccgacggtgaaggagcggctgcgccgcgcgctggagcgcatcgcgtcgcagtcgcagtcgcaggcgcagcggggcgacggggagctgctcgtccaggtctgggtgccgacgcggatcggcgaccggcaggtgctgacgacttgcgggcagccgttctggctggaccgccggaaccagcgcctcgccagctaccggacggtgtcgatgaagtaccagttctccgccgacgagagcgcgcgcgccgacctggggctccccggccgggtcttcgtcggccgcgtccccgagtggacgccggacgtccgctacttctccaccgaggagtacccgcgcgtccagcacgcgcaatacttcgacatccgcggcagcgtcgcgctgccggtcttcgagccgcggagccgagcctgcctcggcgtcgtcgagctcgtcatgaccacgcagaaggtcaactacagtgcggagatcgagaacatctgcaatgctctcaaggaagttgatctcaggagctctgatgtttcaagtgatcctcgttccaaggttgttgatgcttcttaccgagcaattatacctgagatcatggatgttctcagagctgtttgtgatacccacaatctgccactagcccagacatggataccgtgcatctgccaggccaagaggggaagccgccactctgatgaaagctacaaacattgtgtgtccaCtgttgatgaggcatgttatgtccgtgattgttccgtattaggctttcaccaggcttgctccgagcatcatctgttcagaggtgagggtgttgtcggcagggcatttgggacgaatgagccatgtttctccccagacattaccacctacagcaagacccagtaccctctctcgcatcatgccaaactttttggcttgagggcagcagttgccatccagctgcgaagtgtcaagactggaagcctggactttgtcttggagtttttcttgccaatgaagtgcataaatactgaagagcaaagggccatgctcaattctttatctaataccatacaacaagtatgctatacattaagagttgtgaagccaaaagagctggtaaatgatggaccatttgaaattagtcaaccaaccaggccagaattttatgccaagtctgtgcatgaagacttggatgagctctgtagtggtattaatgttcctggaaggacaacatcattggaagcatctgaggaggtatcatcatggatagcgagcttagtggatgctcagaataagggaggaaagggagaaatagatgttgacttgccattcggattcagcaaacaagatgatgaaggatttagtgttacagctggctggcatacttctccagttatggcacctgacggtagcatgttttcagggtttaagcggcatgaagattatgatgtcaaagaaaatacttgttccagtgatccaagcaattcaaactcggacaaagcagtagaaaaacggcgcactaagacggagaaaacagttagcctgcaagatcttcggaagcattttgctggtagcctgaaagaagctgcaaagaatttaggagtgtgcccgactacactgaagagaatatgcaggcagcatggaattaatcgttggccatcacgaaagatcaagaaagttgggcactccctgaagaaattgcaaatggtcattgattcagtacatggtcctgaaggaacagttcagctcagttcactctatgaaaattttaccaagaccacatggtcagaaagagagttacaaggagatgtccattttccagcatctgagcaaaactttcagctggaaccttcagttcctgatcgtccatgtgagggcagattcacttcacatacttctggctctaattccatctccccatcctgcagccagagctcaaattctagccttggttgttccagtgttccaaagactcagcaacagcatggtagtgctcctcagcttgcagtcaaagaggaaatatctatggatgagaatcagtgctccacactaatcaaatctgctagccatgcagaggcagagctgcaaatgtttgttgaagaaagacctaccatgctatttaggtctcagagtcaagtacttttaagtgaacacaaaccgatagaaaacatgtcaaacgtgcaaaaggctaggtctgattctctcaaaataaaagccatctatggcgaggaaagatgtatattccgtcttcagcctagttggggctttcaaaggctaaaagaagagatcgtaaagcggttcggcatttctcaggatactcacgtggacctcaagtatttggacgatgaatctgagtgggttcttttaacctgtgatgcagacctgctggagtgtattgatgtatacaagtcatcaagtaatcaaacagttagaatattggttaatcctagcattcaaccgttgctcaatgcttccttcggtcaaactggtctgtcttga

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Protein seq

MEQKPSPPPPPRSDEEEDGLMGCGMGGTGDIAGGDLDLMEEFLLATPGLDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGGGGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERIASQSQSQAQRGDGELLVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLASYRTVSMKYQFSADESARADLGLPGRVFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCICQAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSGINVPGRTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAPDGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYENFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHTSGSNSISPSCSQSSNSSLGCSSVPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFRSQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQTGLS

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0002490 OsGoSa_03g0002490.02 Chr03 1832632 1832945 - IsoSeq
CDS seq

ctccgccgacgagagcgcgcgcgccgacctggggctccccggccgggtcttcgtcggccgcgtccccgagtggacgccggacgtccgctacttctccaccgaggagtacccgcgcgtccagcacgcgcaatacttcgacatccgcggcagcgtcgcgctgccggtcttcgagccgcggagccgagcctgcctcggcgtcgtcgagctcgtcatgaccacgcagaaggtcaactacagtgcggagatcgagaacatctgcaatgctctcaaggtagatttgcgcaacactgctcc

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Protein seq

LRRRERARRPGAPRPGLRRPRPRVDAGRPLLLHRGVPARPARAILRHPRQRRAAGLRAAEPSLPRRRRARHDHAEGQLQCGDREHLQCSQGRFAQHCS

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 9.941356 29.145435 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0131100 RBH 1.567286 2.250888 0.973788
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g03900 RBH 1.096248 1.543969 0.219477
Nipponbare | IRGSP 1.0 | RAP-db Os03g0131100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0002480 RBH 0.942153 7.545688 2.598148
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0002450 RBH 0.332036 2.685763 0.772268
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0002480 RBH 2.793218 5.818002 2.913623
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0002460 RBH 0.340645 0.273039 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0002490 RBH 9.095707 5.512422 5.109809
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0027900 RBH 5.552221 6.245941 24.2323105
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0002440 RBH 0.182248 0.499910 0.364723
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0028600 RBH 10.9260485 15.416853 8.912922
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0002520 RBH 0.089224 0.584540 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0002520 RBH 0.568816 12.737767 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0002530 RBH 0.644522 0.210944 0.481992
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0002510 RBH 0.279113 5.944637 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G002510 RBH 0.454153 0.718440 0.811474
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0002330 RBH 1.648746 5.169020 1.731587
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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