Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0002330 | OGI:03004840 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:1776579-1781074 | ||||||||
| Gene Symbol | NLP1, OsNLP1 | ||||||||||
| DNA seq | aaaatcttcacccgtaaaagagcaggtttacacgagcaacatcgaaactactccaacatataaataacattgtattaacaataatgctaacactgatctaaaaacaacagaattcatctcgactttgatgatgatcttgtttcattgccagcactgcaactgctttcttgtgaaccctttcgcttctgcaatatgtgggtgcaagataagcttaccatgcaactaatgagatgaacaaagaaaggaaaaatatacactaatattttcatcaatacttacactggtgggaagacatttcagaattgcaaaaatgctcccatgaaggctgaacagacacgctgtaacgggtaacctgaggcaggctttcaaatgctgaaaccttgaagtgaacacttgagaactattgagtcagatgaaaccccaaaagagctacaaacttttgaactgtaactgactgctaaatctatcccaaagcttcatttcgacaaatgccaattattttcatcctctgacctactcacctacaattatgtacactagtttagtctgcctacacaaagttcctatggttatgaaactgaacaaaaggcatacagctccatcttctattcccgtggactccactgcatgaacttcagcatgcaaatcaataccaagcaccgacagggaacatcaacaattacttcatttccaattcaagaacacagcacggttcaactgcaacatcaacaggcagctgtccattaatttgcacctctgcccaagtatccaaatctgaagcctgcatacgccatcttgacttacaaccaaaggcagcgtcaggcattctttacctgaaggagcaatgagatgattgttttcagtgctgcaacaccactgtcaagacagaccagtttgaccgaaggaagcattgagcaacggttgaatgctaggattaaccaatattctaactgtttgattacttgatgacttgtatacatcaatacactccagcaggtctgcatcacaggttaaaagaacccactcagattcatcgtccaaatacttgaggtccacgtgagtatcctgagaaatgccgaaccgctttacgatctcttcttttagcctttgaaagccccaactaggctgaagacggaatatacatctttcctcgccatagatggcttttattttgagagaatcagacctagccttttgcacgtttgacatgttttctatcggtttgtgttcacttaaaagtacttgactctgagacctaaatagcatggtaggtctttcttcaacaaacatttgcagctctgcctctgcatggctagcagatttgattagtgtggagcactgattctcatccatagatatttcctctttgactgcaagctgaggagcactaccatgctgttgctgagtctttggaacactggaacaaccaaggctagaatttgagctctggctgcaggatggggagatggaattagagccagaagtatgtgaagtgaatctgccctcacatggacgatcaggaactgaaggttccagctgaaagttttgctcagatgctggaaaatggacatctccttgtaactctctttctgaccatgtggtcttggtaaaattttcatagagtgaactgagctgaactgttccttcaggaccatgtactgaatcaatgaccatttgcaatttcttcagggagtgcccaactttcttgatctttcgtgatggccaacgattaattccatgctgcctgcatattctcttcagtgtagtcgggcacactggaacaaacggtagaaacataagatcaatagtcagccacagatattgcagtttatatctatgcaaatagtgaatgaagcattagtcctatatactttcagttggatctattgcaaaaaccaagacatttgaattatcatttttatctcaattaattacattgtaagttccccgcctgattgtacacctgtcatttttttctatcctggaacttatctgaaagggttacatgcactgtaagcagattattactatgagcaaacttatcccacttcttttgagccatgcttcaaggagataaatgtacaggaaaagctgcaaaaaataattttaaaaaaggtaaggaagccagccatttcagagatcatttgtcattaaaatacctcctaaattctttgcagcttctttcaggctaccagcaaaatgcttccgaagatcttgcaggctaactgttttctccgtcttagtgcgccgtttttctactgctttgtccgagtttgaattgcttggatcactggaacaagtattttctttgacatcataatcttcatgccgcttaaaccctgaaaacatgctaccgtcaggtgccataactggagaagtatgccagccagctgtaacactaaatccttcatcatcttgtttgctgaatccgaatggcaagtcaacatctatttctccctttcctcccttattctgagcatccactaagctcgctatccatgatgatacctcctcagatgcttccaatgatgttgtccttccaggaacattaatactactacagagctcatccaagtcttcatgcacagacttggcataaaattctggcctggttggttgactaatttcaaatggtccatcatttaccagctcttttggcttcacaactcttaatgtatagcatacttgttgtatggtattagataaagaattgagcatggccctttgctcttcagtatttatgcacttcattggcaagaaaaactccaagacaaagtccaggcttccagtcttgacacttcgcagctggatggcaactgctgccctcaagccaaaaagtttggcatgatgcgagagagggtactgggtcttgctgtaggtggtaatgtctggggagaaacatggctcattcgtcccaaatgccctgccgacaacaccctcacctctgaacagatgatgctcggagcaagcctggtgaaagcctaatacggaacaatcacggacataacatgcctcatcaacagtggacacacaatgtttgtagctttcatcagagtggcggcttcccctcttggcctggcagatgcacggtatccatgtctgggctagtggcagattgtgggtatcacaaacagctctgagaacatccatgatctcaggtataattgctcggtaagaagcatcaacaacctggcatcaagcgggcagcatctgttactgagaacaacatttcagcaaagcactctgatctttaatatctttcatctcaccttggaacgaggatcacttgaaacatcagagctcctgagatcaacttcctgcaattttccacgaaatgtagttttattaagacaaggatgacaccaaggtaggagaagtgaaaagattgattactttggggattggtgtgcccagcagttatcacatcttttcctaatgacatttcatcgaatacgttaagagcataacatggtggcctgcaaagcatgggcatttttttcggctttggagaatcaaatggagcagtgttgcgcaaatctaccttgagagcattgcagatgttctcgatctccgcactgtagttgaccttctgcgtggtcatgacgagctcgacgacgccgaggcaggctcggctccgcggctcgaagaccggcagcgcgacgctgccgcggatgtcgaagtattgcgcgtgctggacgcgcgggtactcctcggtggagaagtagcggacgtccggcgtccactcggggacgcggccgacgaagacccggccggggagccccaggtcggcgcgcgcgctctcgtcggcggagaactggtacttcatcgacaccgtccggtagctggcgaggcgctggttccggcggtccagccagaacggctgcccgcaagtcgtcagcacctgccggtcgccgatccgcgtcggcacccagacctggacgagcagctccccgtcgccccgctgcgcctgcgactgcgactgcgacgcgatgcgctccagcgcgcggcgcagccgctccttcaccgtcggctccacggccacctcctgcggcgccgtctggaacgtccagccgcggtgcgcggggctcacctcgaggccgccgccgccacggctgggcatctccgcctcgtccctgtcgtcctcgccggccgccggcgcgggggtagtcaaggtagtgacgctgctgccgatgtcgaacagcggggagaaggggctcgccgcccccggatgccagaactccgacaaatcgagccccggcgtcgccagcaagaactcctccatgagatccaggtcaccgccggcgatatcccccgtcccgcccatcccgcatcccatcaatccatcctcctcctcatcgctcctcggcggcggcggcggcgacggcttctgctccatgaccggacaagcaccaccaccaacctcacagccctcgcatacccccaatccgccgaaacgcagccgcgcggaggcgaacaaacacgagccacgaacctgg
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| CDS seq | atggagcagaagccgtcgccgccgccgccgccgaggagcgatgaggaggaggatggattgatgggatgcgggatgggcgggacgggggatatcgccggcggtgacctggatctcatggaggagttcttgctggcgacgccggggctcgatttgtcggagttctggcatccgggggcggcgagccccttctccccgctgttcgacatcggcagcagcgtcactaccttgactacccccgcgccggcggccggcgaggacgacagggacgaggcggagatgcccagccgtggcggcggcggcctcgaggtgagccccgcgcaccgcggctggacgttccagacggcgccgcaggaggtggccgtggagccgacggtgaaggagcggctgcgccgcgcgctggagcgcatcgcgtcgcagtcgcagtcgcaggcgcagcggggcgacggggagctgctcgtccaggtctgggtgccgacgcggatcggcgaccggcaggtgctgacgacttgcgggcagccgttctggctggaccgccggaaccagcgcctcgccagctaccggacggtgtcgatgaagtaccagttctccgccgacgagagcgcgcgcgccgacctggggctccccggccgggtcttcgtcggccgcgtccccgagtggacgccggacgtccgctacttctccaccgaggagtacccgcgcgtccagcacgcgcaatacttcgacatccgcggcagcgtcgcgctgccggtcttcgagccgcggagccgagcctgcctcggcgtcgtcgagctcgtcatgaccacgcagaaggtcaactacagtgcggagatcgagaacatctgcaatgctctcaaggaagttgatctcaggagctctgatgtttcaagtgatcctcgttccaaggttgttgatgcttcttaccgagcaattatacctgagatcatggatgttctcagagctgtttgtgatacccacaatctgccactagcccagacatggataccgtgcatctgccaggccaagaggggaagccgccactctgatgaaagctacaaacattgtgtgtccactgttgatgaggcatgttatgtccgtgattgttccgtattaggctttcaccaggcttgctccgagcatcatctgttcagaggtgagggtgttgtcggcagggcatttgggacgaatgagccatgtttctccccagacattaccacctacagcaagacccagtaccctctctcgcatcatgccaaactttttggcttgagggcagcagttgccatccagctgcgaagtgtcaagactggaagcctggactttgtcttggagtttttcttgccaatgaagtgcataaatactgaagagcaaagggccatgctcaattctttatctaataccatacaacaagtatgctatacattaagagttgtgaagccaaaagagctggtaaatgatggaccatttgaaattagtcaaccaaccaggccagaattttatgccaagtctgtgcatgaagacttggatgagctctgtagtagtattaatgttcctggaaggacaacatcattggaagcatctgaggaggtatcatcatggatagcgagcttagtggatgctcagaataagggaggaaagggagaaatagatgttgacttgccattcggattcagcaaacaagatgatgaaggatttagtgttacagctggctggcatacttctccagttatggcacctgacggtagcatgttttcagggtttaagcggcatgaagattatgatgtcaaagaaaatacttgttccagtgatccaagcaattcaaactcggacaaagcagtagaaaaacggcgcactaagacggagaaaacagttagcctgcaagatcttcggaagcattttgctggtagcctgaaagaagctgcaaagaatttaggagtgtgcccgactacactgaagagaatatgcaggcagcatggaattaatcgttggccatcacgaaagatcaagaaagttgggcactccctgaagaaattgcaaatggtcattgattcagtacatggtcctgaaggaacagttcagctcagttcactctatgaaaattttaccaagaccacatggtcagaaagagagttacaaggagatgtccattttccagcatctgagcaaaactttcagctggaaccttcagttcctgatcgtccatgtgagggcagattcacttcacatacttctggctctaattccatctccccatcctgcagccagagctcaaattctagccttggttgttccagtgttccaaagactcagcaacagcatggtagtgctcctcagcttgcagtcaaagaggaaatatctatggatgagaatcagtgctccacactaatcaaatctgctagccatgcagaggcagagctgcaaatgtttgttgaagaaagacctaccatgctatttaggtctcagagtcaagtacttttaagtgaacacaaaccgatagaaaacatgtcaaacgtgcaaaaggctaggtctgattctctcaaaataaaagccatctatggcgaggaaagatgtatattccgtcttcagcctagttggggctttcaaaggctaaaagaagagatcgtaaagcggttcggcatttctcaggatactcacgtggacctcaagtatttggacgatgaatctgagtgggttcttttaacctgtgatgcagacctgctggagtgtattgatgtatacaagtcatcaagtaatcaaacagttagaatattggttaatcctagcattcaaccgttgctcaatgcttccttcggtcaaactggtctgtcttga
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| Protein seq | MEQKPSPPPPPRSDEEEDGLMGCGMGGTGDIAGGDLDLMEEFLLATPGLDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGGGGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERIASQSQSQAQRGDGELLVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLASYRTVSMKYQFSADESARADLGLPGRVFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCICQAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSSINVPGRTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAPDGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYENFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHTSGSNSISPSCSQSSNSSLGCSSVPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFRSQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQTGLS |
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| Function | Protein NLP1 [UniProtKB/Swiss-Prot:Q10S83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0002330 | OsNaBo_03g0002330.01 | Chr03 | 1776579 | 1781074 | - | NAM | ||
| CDS seq | atggagcagaagccgtcgccgccgccgccgccgaggagcgatgaggaggaggatggattgatgggatgcgggatgggcgggacgggggatatcgccggcggtgacctggatctcatggaggagttcttgctggcgacgccggggctcgatttgtcggagttctggcatccgggggcggcgagccccttctccccgctgttcgacatcggcagcagcgtcactaccttgactacccccgcgccggcggccggcgaggacgacagggacgaggcggagatgcccagccgtggcggcggcggcctcgaggtgagccccgcgcaccgcggctggacgttccagacggcgccgcaggaggtggccgtggagccgacggtgaaggagcggctgcgccgcgcgctggagcgcatcgcgtcgcagtcgcagtcgcaggcgcagcggggcgacggggagctgctcgtccaggtctgggtgccgacgcggatcggcgaccggcaggtgctgacgacttgcgggcagccgttctggctggaccgccggaaccagcgcctcgccagctaccggacggtgtcgatgaagtaccagttctccgccgacgagagcgcgcgcgccgacctggggctccccggccgggtcttcgtcggccgcgtccccgagtggacgccggacgtccgctacttctccaccgaggagtacccgcgcgtccagcacgcgcaatacttcgacatccgcggcagcgtcgcgctgccggtcttcgagccgcggagccgagcctgcctcggcgtcgtcgagctcgtcatgaccacgcagaaggtcaactacagtgcggagatcgagaacatctgcaatgctctcaaggaagttgatctcaggagctctgatgtttcaagtgatcctcgttccaaggttgttgatgcttcttaccgagcaattatacctgagatcatggatgttctcagagctgtttgtgatacccacaatctgccactagcccagacatggataccgtgcatctgccaggccaagaggggaagccgccactctgatgaaagctacaaacattgtgtgtccactgttgatgaggcatgttatgtccgtgattgttccgtattaggctttcaccaggcttgctccgagcatcatctgttcagaggtgagggtgttgtcggcagggcatttgggacgaatgagccatgtttctccccagacattaccacctacagcaagacccagtaccctctctcgcatcatgccaaactttttggcttgagggcagcagttgccatccagctgcgaagtgtcaagactggaagcctggactttgtcttggagtttttcttgccaatgaagtgcataaatactgaagagcaaagggccatgctcaattctttatctaataccatacaacaagtatgctatacattaagagttgtgaagccaaaagagctggtaaatgatggaccatttgaaattagtcaaccaaccaggccagaattttatgccaagtctgtgcatgaagacttggatgagctctgtagtagtattaatgttcctggaaggacaacatcattggaagcatctgaggaggtatcatcatggatagcgagcttagtggatgctcagaataagggaggaaagggagaaatagatgttgacttgccattcggattcagcaaacaagatgatgaaggatttagtgttacagctggctggcatacttctccagttatggcacctgacggtagcatgttttcagggtttaagcggcatgaagattatgatgtcaaagaaaatacttgttccagtgatccaagcaattcaaactcggacaaagcagtagaaaaacggcgcactaagacggagaaaacagttagcctgcaagatcttcggaagcattttgctggtagcctgaaagaagctgcaaagaatttaggagtgtgcccgactacactgaagagaatatgcaggcagcatggaattaatcgttggccatcacgaaagatcaagaaagttgggcactccctgaagaaattgcaaatggtcattgattcagtacatggtcctgaaggaacagttcagctcagttcactctatgaaaattttaccaagaccacatggtcagaaagagagttacaaggagatgtccattttccagcatctgagcaaaactttcagctggaaccttcagttcctgatcgtccatgtgagggcagattcacttcacatacttctggctctaattccatctccccatcctgcagccagagctcaaattctagccttggttgttccagtgttccaaagactcagcaacagcatggtagtgctcctcagcttgcagtcaaagaggaaatatctatggatgagaatcagtgctccacactaatcaaatctgctagccatgcagaggcagagctgcaaatgtttgttgaagaaagacctaccatgctatttaggtctcagagtcaagtacttttaagtgaacacaaaccgatagaaaacatgtcaaacgtgcaaaaggctaggtctgattctctcaaaataaaagccatctatggcgaggaaagatgtatattccgtcttcagcctagttggggctttcaaaggctaaaagaagagatcgtaaagcggttcggcatttctcaggatactcacgtggacctcaagtatttggacgatgaatctgagtgggttcttttaacctgtgatgcagacctgctggagtgtattgatgtatacaagtcatcaagtaatcaaacagttagaatattggttaatcctagcattcaaccgttgctcaatgcttccttcggtcaaactggtctgtcttga
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| Protein seq | MEQKPSPPPPPRSDEEEDGLMGCGMGGTGDIAGGDLDLMEEFLLATPGLDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGGGGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERIASQSQSQAQRGDGELLVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLASYRTVSMKYQFSADESARADLGLPGRVFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCICQAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSSINVPGRTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAPDGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYENFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHTSGSNSISPSCSQSSNSSLGCSSVPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFRSQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQTGLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.648746 | 5.169020 | 1.731587 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0131100 | RBH | 1.567286 | 2.250888 | 0.973788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03900 | RBH | 1.096248 | 1.543969 | 0.219477 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0131100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002480 | RBH | 0.942153 | 7.545688 | 2.598148 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002450 | RBH | 0.332036 | 2.685763 | 0.772268 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002480 | RBH | 2.793218 | 5.818002 | 2.913623 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002460 | RBH | 0.340645 | 0.273039 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002490 | RBH | 9.095707 | 5.512422 | 5.109809 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0027900 | RBH | 5.552221 | 6.245941 | 24.2323105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002440 | RBH | 0.182248 | 0.499910 | 0.364723 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0028600 | RBH | 10.9260485 | 15.416853 | 8.912922 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0002520 | RBH | 0.089224 | 0.584540 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002520 | RBH | 0.568816 | 12.737767 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002490 | RBH | 9.941356 | 29.145435 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002530 | RBH | 0.644522 | 0.210944 | 0.481992 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002510 | RBH | 0.279113 | 5.944637 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002510 | RBH | 0.454153 | 0.718440 | 0.811474 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
