Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0018960 | OGI:02001240 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:19593166-19597499 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaggagaaagaagcgagcgcatggagttcatcgggtgagcgttcttgatagtaggagattcttctccaatccgtgggagaagagctaggaggagaggaggaatccgtgtcccctcccgcggacctgcttctccggctgcccgtaagttggatttttctctgcttcgctccctcccctcctcgcgccattgTttttttcttggtcctttggctctcgggtgcgtcgccaccgcgattcgatctggggggagagggaggaggcgcaggcggagcgcacgagggaggtgggtggaggagagggtggggggcggcggcttagctgctgtggacggcagaaggggtttcttgtgttccagacaagaatcctgaggagtgagagcattacattgacatcctcatcagggctttgggtgtggaaagaagcgtataatgatgtattccttgttcagaatttactgttggttaaaaagtatatgtgcttcaacttttgaggacagggccatagggggtgaaaataagatataagtaaataacttacaaggaaacatggatgagagtgtgtaccataagcacaatttcgttttgtttcaataccaaatattttcttttaactaaatggattcattgacaataaggtatttgcttcaatatgcgttcttattacttcatatcataccacattttgtgattggggaatttcatatagtttcagatgctatgttagtttgagccatatcgtccaaccctgctcactccccctcctaaatttccattttccatgttttgttgtgcaggaaacatgctttctccctatcagcctttgtgatgcattgaacaggggttgagaagtactgtaatttttgtaatggctgggtgttccttggcaacactgagaggacaacatcgagggagatggatccaatctcacagcaagctccccacaaggattatgtctattaatctgccaaagaggtaaaaaagttttccgtactctgttgatattagtcatcttgagttcttcaatggtaatttaatgtttgattttcttcatttgcagtaatcacagtcacaagattcagcttccatgccagtccaatttaggaagaaaacagaaaactggtgcatttgctcctttgggttttcatggaaggtgttgccggatcgaaacatcagttaaatgttatttcttgcagtcgcttgtggattctgagagtatgatctcaccaaatttgttattgctttctgatgaagctctactaactatcagtatagtttttgcatatttggctggagttgtaccctctggccatgcatttcctcatgctagaaaccatagtcaaaaccaacatcttggagctccaggtccatctgattctggtaggtaagagtagctgcttaagtatgacttctagatctcaaaacattggcttgacaataaaaactgataatgtattctttccattccaatttctagggatatgaaatggttacctgaagggaatactaggttttaccccagcgatacatggagtaaagtgagaatgaaactttcagaagccttgcaatcaaatggtcgagatgccacttcggatggcagcgatagtgaactcaagaacaatcgcaaaaattatcctttgagtatgcttgcaattcatggtggtcccaggctgcggcttcttctagctacctttcagctacttgagatggaggcaagagggccatcaactttttctttctaatatgctggggattatcatggatgaatactgaagattacccatgcatacttcacttatttttttttctaagggagagagcatacttcaaaaagcttaagcaagctggtagttgtgatattttctactaaaatggtgccactatccttctgtagagtattataatggatgaatcctgaagattgttcttgcatgtttcactagcttagttaagctttctctctttgtttttttaatgttacttgactagccactagaactatggactaaagttcagtcagtatcaagatatgtttttctttctaaccagcacagctgtataatatgtcagaacacatgtgttgattttgttgtagttaatttgatcttgtgcaggtaagaaatgttcctgaaagttctgaacttgtagatgggatcaaatggttgcaaatatcaaccacgttgattgatggcttgattgaaccaacatttatgaaatggattcaagaagaaaaagcctgggagaacagcaagatcaatgaagtataccattattttcaactgtcttacatttctccatattgtcatgccttcaagtccctgatagttttcttttttcctgataaaggaacttatgaagacggtaaccagcaaaataaaggaggatgacaggatcttgaagaggttcaacagattagggaaatctgaactctatttggatctgctttatttcctgagatttggttctgcaaggtactatttatcttcacttcttgatccatatggtaccacttttttccatctgaactccatctcctgtttaagagtttaagatggcactattggttgtttattgtctgtacttatatccatatatagctatttaccaaacagtaatccttccataaggtaaatgagttcattcttatccttcatttcctgatggcaggtcttatagctattttgatgctaaatttctggctaaacatggagcgagaattttggaggacctggttattttcttagctgacgcggtcgctagtatttacatagagcttatatcagttgatggtgatatgccgactgatgttgttggttccagcttagctctatgctcgctgtcaaccagagaacttcaaagaatgcgtaacgaggtaatagttgtggataattcaaggtgttgcttgtgcttttactgttcaaatgtgcttttcgaaacttgcttgtatatacaccaaaaaataagcactttttatgctcacagtttggattcggtaagttgatgatttatagttggctttgcatgaagttagtagtctccttggagacaagccaacaaatatttaaatcctacccaagctggaaaccatatcaacagactaacagatcttgaaatattttttcttcaagtactcttattgttctcgtatggtattgtagtgttatatcatcactaattaactacgaccagccttctcaagttctcatcatgatttacgtgtaagaaatgaactgtgaacagagacgatgctgcgattctaatatactacattttgtccacatgtgtaccttctgtgtcaTtttctcttaaccttataagacattttgattgccaaacaaatatttttaagtgaatatcacagtacatgttacgtgaataatctaattgggcaaatatttgcactttgaactctcctctttttggttaatatttttaagtttttaggaaacatctctattccagttttttcttacttccagatttgataatccagtgctaaatttttttaaggtggcaattaatgggtggctgcaccagtattttgagtcagttgtctcaatgtacgaggacaggtttgagttatatgttttatccagaaaactttgtgaaaaaccagcagataatcaagctgaagtgacaaactggtggaggcttggatttggaaagccttccaccgttactcttctagagtacgttcacataagctcattttctcttccggtgagaaggacgaaagaattgagagctctggctggatggtattcgcaatttccttttctaccattcttttcatgaataattcatggaaacatttctgtgcgacttggggcaagatgaacataactttactctgttctgttgcaggaggtattatttcagcctattattagaaatgtcagatattgccatgcctttcataagggctgttgtcaccaaagttagtgctgcagtgtcgtacttctgggtgtccatgataggaaggtctctgggattgattttctcagggataaggcaatcacttggttggagatgatcagatgtttctttggtttttgattgtgagatcttgtgactgagcgatatttgcctcgcagtcatgtccagttttgtcaatttatataggcttttcgttgaccTttttttttttactgttgagatggctgacttctggtcctcgttatacatgttctgtatcacataatgtaacaaagttcattgatctgaccaaagggtgaaaattatttgttaatcttggaatgcatcatgtggtatataacattttgaaggcaaaccacacatttcaggacattatggcagaagtcagattgtctgatcc
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| CDS seq | atggctgggtgttccttggcaacactgagaggacaacatcgagggagatggatccaatctcacagcaagctccccacaaggattatgtctattaatctgccaaagagtaatcacagtcacaagattcagcttccatgccagtccaatttaggaagaaaacagaaaactggtgcatttgctcctttgggttttcatggaaggtgttgccggatcgaaacatcagttaaatgttatttcttgcagtcgcttgtggattctgagagtatgatctcaccaaatttgttattgctttctgatgaagctctactaactatcagtatagtttttgcatatttggctggagttgtaccctctggccatgcatttcctcatgctagaaaccatagtcaaaaccaacatcttggagctccaggtccatctgattctggtagggatatgaaatggttacctgaagggaatactaggttttaccccagcgatacatggagtaaagtgagaatgaaactttcagaagccttgcaatcaaatggtcgagatgccacttcggatggcagcgatagtgaactcaagaacaatcgcaaaaattatcctttgagtatgcttgcaattcatggtggtcccaggctgcggcttcttctagctacctttcagctacttgagatggaggtaagaaatgttcctgaaagttctgaacttgtagatgggatcaaatggttgcaaatatcaaccacgttgattgatggcttgattgaaccaacatttatgaaatggattcaagaagaaaaagcctgggagaacagcaagatcaatgaagaacttatgaagacggtaaccagcaaaataaaggaggatgacaggatcttgaagaggttcaacagattagggaaatctgaactctatttggatctgctttatttcctgagatttggttctgcaaggtcttatagctattttgatgctaaatttctggctaaacatggagcgagaattttggaggacctggttattttcttagctgacgcggtcgctagtatttacatagagcttatatcagttgatggtgatatgccgactgatgttgttggttccagcttagctctatgctcgctgtcaaccagagaacttcaaagaatgcgtaacgaggtggcaattaatgggtggctgcaccagtattttgagtcagttgtctcaatgtacgaggacaggtttgagttatatgttttatccagaaaactttgtgaaaaaccagcagataatcaagctgaagtgacaaactggtggaggcttggatttggaaagccttccaccgttactcttctagagtacgttcacataagctcattttctcttccggtgagaaggacgaaagaattgagagctctggctggatggaggtattatttcagcctattattagaaatgtcagatattgccatgcctttcataagggctgttgtcaccaaagttagtgctgcagtgtcgtacttctgggtgtccatgataggaaggtctctgggattgattttctcagggataaggcaatcacttggttggagatga
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| Protein seq | MAGCSLATLRGQHRGRWIQSHSKLPTRIMSINLPKSNHSHKIQLPCQSNLGRKQKTGAFAPLGFHGRCCRIETSVKCYFLQSLVDSESMISPNLLLLSDEALLTISIVFAYLAGVVPSGHAFPHARNHSQNQHLGAPGPSDSGRDMKWLPEGNTRFYPSDTWSKVRMKLSEALQSNGRDATSDGSDSELKNNRKNYPLSMLAIHGGPRLRLLLATFQLLEMEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKAWENSKINEELMKTVTSKIKEDDRILKRFNRLGKSELYLDLLYFLRFGSARSYSYFDAKFLAKHGARILEDLVIFLADAVASIYIELISVDGDMPTDVVGSSLALCSLSTRELQRMRNEVAINGWLHQYFESVVSMYEDRFELYVLSRKLCEKPADNQAEVTNWWRLGFGKPSTVTLLEYVHISSFSLPVRRTKELRALAGWRYYFSLLLEMSDIAMPFIRAVVTKVSAAVSYFWVSMIGRSLGLIFSGIRQSLGWR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0018960 | OsGoSa_02g0018960.02 | Chr02 | 19593166 | 19597499 | + | NAM | ||
| CDS seq | atgatctcaccaaatttgttattgctttctgatgaagctctactaactatcagtatagtttttgcatatttggctggagttgtaccctctggccatgcatttcctcatgctagaaaccatagtcaaaaccaacatcttggagctccaggtccatctgattctggtagggatatgaaatggttacctgaagggaatactaggttttaccccagcgatacatggagtaaagtgagaatgaaactttcagaagccttgcaatcaaatggtcgagatgccacttcggatggcagcgatagtgaactcaagaacaatcgcaaaaattatcctttgagtatgcttgcaattcatggtggtcccaggctgcggcttcttctagctacctttcagctacttgagatggaggtaagaaatgttcctgaaagttctgaacttgtagatgggatcaaatggttgcaaatatcaaccacgttgattgatggcttgattgaaccaacatttatgaaatggattcaagaagaaaaagcctgggagaacagcaagatcaatgaagaacttatgaagacggtaaccagcaaaataaaggaggatgacaggatcttgaagaggttcaacagattagggaaatctgaactctatttggatctgctttatttcctgagatttggttctgcaaggtcttatagctattttgatgctaaatttctggctaaacatggagcgagaattttggaggacctggttattttcttagctgacgcggtcgctagtatttacatagagcttatatcagttgatggtgatatgccgactgatgttgttggttccagcttagctctatgctcgctgtcaaccagagaacttcaaagaatgcgtaacgaggtggcaattaatgggtggctgcaccagtattttgagtcagttgtctcaatgtacgaggacaggtttgagttatatgttttatccagaaaactttgtgaaaaaccagcagataatcaagctgaagtgacaaactggtggaggcttggatttggaaagccttccaccgttactcttctagagtacgttcacataagctcattttctcttccggtgagaaggacgaaagaattgagagctctggctggatggaggtattatttcagcctattattagaaatgtcagatattgccatgcctttcataagggctgttgtcaccaaagttagtgctgcagtgtcgtacttctgggtgtccatgataggaaggtctctgggattgattttctcagggataaggcaatcacttggttggagatga
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| Protein seq | MISPNLLLLSDEALLTISIVFAYLAGVVPSGHAFPHARNHSQNQHLGAPGPSDSGRDMKWLPEGNTRFYPSDTWSKVRMKLSEALQSNGRDATSDGSDSELKNNRKNYPLSMLAIHGGPRLRLLLATFQLLEMEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKAWENSKINEELMKTVTSKIKEDDRILKRFNRLGKSELYLDLLYFLRFGSARSYSYFDAKFLAKHGARILEDLVIFLADAVASIYIELISVDGDMPTDVVGSSLALCSLSTRELQRMRNEVAINGWLHQYFESVVSMYEDRFELYVLSRKLCEKPADNQAEVTNWWRLGFGKPSTVTLLEYVHISSFSLPVRRTKELRALAGWRYYFSLLLEMSDIAMPFIRAVVTKVSAAVSYFWVSMIGRSLGLIFSGIRQSLGWR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0018960 | OsGoSa_02g0018960.03 | Chr02 | 19593166 | 19597499 | + | NAM | ||
| CDS seq | atgccagtccaatttaggaagaaaacagaaaactggtgcatttgctcctttgggttttcatggaaggtgttgccggatcgaaacatcatttttgcatatttggctggagttgtaccctctggccatgcatttcctcatgctagaaaccatagtcaaaaccaacatcttggagctccaggtccatctgattctggtagggatatgaaatggttacctgaagggaatactaggttttaccccagcgatacatggagtaaagtgagaatgaaactttcagaagccttgcaatcaaatggtcgagatgccacttcggatggcagcgatagtgaactcaagaacaatcgcaaaaattatcctttgagtatgcttgcaattcatggtggtcccaggctgcggcttcttctagctacctttcagctacttgagatggaggtaagaaatgttcctgaaagttctgaacttgtagatgggatcaaatggttgcaaatatcaaccacgttgattgatggcttgattgaaccaacatttatgaaatggattcaagaagaaaaagcctgggagaacagcaagatcaatgaagaacttatgaagacggtaaccagcaaaataaaggaggatgacaggatcttgaagaggttcaacagattagggaaatctgaactctatttggatctgctttatttcctgagatttggttctgcaaggtcttatagctattttgatgctaaatttctggctaaacatggagcgagaattttggaggacctggttattttcttagctgacgcggtcgctagtatttacatagagcttatatcagttgatggtgatatgccgactgatgttgttggttccagcttagctctatgctcgctgtcaaccagagaacttcaaagaatgcgtaacgaggtggcaattaatgggtggctgcaccagtattttgagtcagttgtctcaatgtacgaggacaggtttgagttatatgttttatccagaaaactttgtgaaaaaccagcagataatcaagctgaagtgacaaactggtggaggcttggatttggaaagccttccaccgttactcttctagagtacgttcacataagctcattttctcttccggtgagaaggacgaaagaattgagagctctggctggatggaggtattatttcagcctattattagaaatgtcagatattgccatgcctttcataagggctgttgtcaccaaagttagtgctgcagtgtcgtacttctgggtgtccatgataggaaggtctctgggattgattttctcagggataaggcaatcacttggttggagatga
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| Protein seq | MPVQFRKKTENWCICSFGFSWKVLPDRNIIFAYLAGVVPSGHAFPHARNHSQNQHLGAPGPSDSGRDMKWLPEGNTRFYPSDTWSKVRMKLSEALQSNGRDATSDGSDSELKNNRKNYPLSMLAIHGGPRLRLLLATFQLLEMEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKAWENSKINEELMKTVTSKIKEDDRILKRFNRLGKSELYLDLLYFLRFGSARSYSYFDAKFLAKHGARILEDLVIFLADAVASIYIELISVDGDMPTDVVGSSLALCSLSTRELQRMRNEVAINGWLHQYFESVVSMYEDRFELYVLSRKLCEKPADNQAEVTNWWRLGFGKPSTVTLLEYVHISSFSLPVRRTKELRALAGWRYYFSLLLEMSDIAMPFIRAVVTKVSAAVSYFWVSMIGRSLGLIFSGIRQSLGWR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0018960 | OsGoSa_02g0018960.01 | Chr02 | 19593166 | 19597499 | + | NAM | ||
| CDS seq | atggctgggtgttccttggcaacactgagaggacaacatcgagggagatggatccaatctcacagcaagctccccacaaggattatgtctattaatctgccaaagagtaatcacagtcacaagattcagcttccatgccagtccaatttaggaagaaaacagaaaactggtgcatttgctcctttgggttttcatggaaggtgttgccggatcgaaacatcagttaaatgttatttcttgcagtcgcttgtggattctgagagtatgatctcaccaaatttgttattgctttctgatgaagctctactaactatcagtatagtttttgcatatttggctggagttgtaccctctggccatgcatttcctcatgctagaaaccatagtcaaaaccaacatcttggagctccaggtccatctgattctggtagggatatgaaatggttacctgaagggaatactaggttttaccccagcgatacatggagtaaagtgagaatgaaactttcagaagccttgcaatcaaatggtcgagatgccacttcggatggcagcgatagtgaactcaagaacaatcgcaaaaattatcctttgagtatgcttgcaattcatggtggtcccaggctgcggcttcttctagctacctttcagctacttgagatggaggtaagaaatgttcctgaaagttctgaacttgtagatgggatcaaatggttgcaaatatcaaccacgttgattgatggcttgattgaaccaacatttatgaaatggattcaagaagaaaaagcctgggagaacagcaagatcaatgaagaacttatgaagacggtaaccagcaaaataaaggaggatgacaggatcttgaagaggttcaacagattagggaaatctgaactctatttggatctgctttatttcctgagatttggttctgcaaggtcttatagctattttgatgctaaatttctggctaaacatggagcgagaattttggaggacctggttattttcttagctgacgcggtcgctagtatttacatagagcttatatcagttgatggtgatatgccgactgatgttgttggttccagcttagctctatgctcgctgtcaaccagagaacttcaaagaatgcgtaacgaggtggcaattaatgggtggctgcaccagtattttgagtcagttgtctcaatgtacgaggacaggtttgagttatatgttttatccagaaaactttgtgaaaaaccagcagataatcaagctgaagtgacaaactggtggaggcttggatttggaaagccttccaccgttactcttctagagtacgttcacataagctcattttctcttccggtgagaaggacgaaagaattgagagctctggctggatggaggtattatttcagcctattattagaaatgtcagatattgccatgcctttcataagggctgttgtcaccaaagttagtgctgcagtgtcgtacttctgggtgtccatgataggaaggtctctgggattgattttctcagggataaggcaatcacttggttggagatga
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| Protein seq | MAGCSLATLRGQHRGRWIQSHSKLPTRIMSINLPKSNHSHKIQLPCQSNLGRKQKTGAFAPLGFHGRCCRIETSVKCYFLQSLVDSESMISPNLLLLSDEALLTISIVFAYLAGVVPSGHAFPHARNHSQNQHLGAPGPSDSGRDMKWLPEGNTRFYPSDTWSKVRMKLSEALQSNGRDATSDGSDSELKNNRKNYPLSMLAIHGGPRLRLLLATFQLLEMEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKAWENSKINEELMKTVTSKIKEDDRILKRFNRLGKSELYLDLLYFLRFGSARSYSYFDAKFLAKHGARILEDLVIFLADAVASIYIELISVDGDMPTDVVGSSLALCSLSTRELQRMRNEVAINGWLHQYFESVVSMYEDRFELYVLSRKLCEKPADNQAEVTNWWRLGFGKPSTVTLLEYVHISSFSLPVRRTKELRALAGWRYYFSLLLEMSDIAMPFIRAVVTKVSAAVSYFWVSMIGRSLGLIFSGIRQSLGWR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 19594224 | 19594547 | + | OsGoSa_02g0018960.01 | OsGoSa_02g0018960.03,OsGoSa_02g0018960.01 | All |
| RI | Chr02 | 19593961 | 19594547 | + | OsGoSa_02g0018960.02 | OsGoSa_02g0018960.02,OsGoSa_02g0018960.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.409842 | 6.033744 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0515000 | RBH | 4.216087 | 3.861277 | 3.697700 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g31070 | RBH | 3.139986 | 2.706475 | 1.001990 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0515000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018770 | RBH | 1.269768 | 17.172306 | 6.669565 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018930 | RBH | 0.483823 | 2.903237 | 1.728157 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018870 | RBH | 4.557344 | 2.329633 | 8.772382 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018640 | RBH | 0.483029 | 0.334897 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018580 | RBH | 15.044301 | 13.824676 | 13.958940 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0309200 | RBH | 21.963361 | 11.371053 | 16.0759665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018300 | RBH | 0.643853 | 0.692669 | 1.650341 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0328200 | RBH | 12.632153 | 7.188125 | 19.8525065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018840 | RBH | 0.675557 | 0.249068 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018550 | RBH | 1.993482 | 8.439651 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018700 | RBH | 3.824123 | 0.906752 | 2.399310 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018480 | RBH | 2.438780 | 7.199912 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018890 | RBH | 1.043644 | 5.890951 | 2.983186 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0018590 | RBH | 5.094174 | 14.505994 | 6.683112 |
