Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0043490 | OGI:01117270 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:40863446-40871685 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacaatgaaaccgttcagcactcaatcataaagaaaatgtgttccatccccagaacaatgaaaccgttcagcactcattcataaagaaactgtggtatctacgttccagaatcttttcacataaagtgttccaaaattatgttgaagagaccatcgTCtcgaatcctaatattgtttcagatgaggctaggaaatagctgcttcaaaaatactctctctctcccggcgaaaaaaaaatattcagttacctatcactaacaatctaacacagactagtgttatctcgtatcaattggttgcagggtgtttcgcctttgaatgatccttcagagcaccagaggagttgaaaggcctgagcaagttagcaagtgcctatgtgaggatatagcaatatttcaatggtaaatcattaagtaaaaggaacaataatttactttttgcatgagttgcagacatagctagcagaacgcttaggcgtgtcgttctttatgggcgtcctctttgcctgttttgctgggtgagggtttgtaacttgaagatgactacctctcttgctagtattagtacctgcacacaagatcaacaagaagtatgaatttgcaaTcttcatgacgaaaaaattgtgagttcaacaaaaacaaatcaaaagaaacaaattccaaccagTtttgttgtccgtaattggtgcttctatctttgccatctcatgtggaaatgtcttcaagggtgttaccactggttcattttcctctttagtattctgggagatcaaggaaacaacaacaacaaaaaagttacaaggtttctgagaaattaagcatcagaaactatcatccacttaagtatctcatactgttggtgtaatatgcaactttatgagggacctacttgtaattctgttgaataaagatatgcatgtgtgggggtgctgatcggtggtgaggccaacaagctcattccacccctctctcaggcgttaggcagcagcagcaggaaggcgggagaaggtagcagcaggagcagcaccggcgtgcggggcagcagcagcgccgccgcgccactcggcgcgctggtagcagccccgctgcgcgcaagcgaggccctcaggttcgtgggcttcctggaggagaggagctctgtgtgcgcaagctaggaggaagaaaagacggtactgttttgggagttggaTTtgggactgatttgtgagcttgttgtgggaaagagagcaagtttatttctgtttctttgttgacaggtgcgggaagaagcctggtccagttatgtgatttgggttgctaagagcacaagcgaggatatgttcccgttctttgcttgctgaaaacttgatggaataagagttgccgtgattgtggtgaacacgggcagcaaggagtgttagttggcatcgctctaggagatggatccattgaaaggggttgaggaatcatcgctggtcactaaaggcgagatgaaaagcctactacaagacttgatagctactgggatgatggggcctagaataggaggggcatcacctgaaataaagctagagcaaatgccgaatgaagttaagttggaggagagccaaaattacttgagctggtctagaaggacaagattgatgttgagggcaaaaggggtagaacactatttggaggaaacttgtattgaaccagatgacaagcttagtgtggactggaaggtgtggaattccaccaactctacggtggcaacatggttaatgacctcagtggctccatccattgcgaggatggtggagacaatttctaatgcatcaactgtgtggaagacattgagcaaaatgtactcaggggaagacaatgcaatgatgatggttgaggctcaagacaaggtggagaacttgaagcaagagggaagaactgttcaagaatatgctagtgagttgcaacaattatgggcagatttggatcactatgagagggggactgggaggaggattgggactggagtcaggcgcaatgggttgtggtacatcaataatgaagaagtaggattggctgcagttgcaggaaatgctgaggagattattttgcttcattgccggttaggacatccatcatttgataacgtaagtaagctatatccaattctctttaatggagtgaacaaaagtagacttgtctgtgacgcttgcgaatttggcaaacatacacggaccccatatgttgggagtggcctccgtagttatgaaccctttatattaatacattatgatgtttggggaccatggccagttactttagtgagtggatttaagtggtttgtttccttcattgattgttacactcgaatgacttggatttatgtacttaagcacaagaatgatgttcttcgatgcttccaagattttcataaattcaaatcagtttgatgcaaatgttcgaatcattcgaactgataatgggactgagtatatcaacaacgaatttgtctcttatgtcttggatcaagggatcatacatcaaaccacttgtcctggaacccctcctcaaaatggtgtagctgagaggaagaaccgacatttgttggaggtggcacgttcacttatgtttcagatgaatgtacccaaatacttgtggaagtgatgactgctgcatatcttattaatcgcatatcttgtggagatgacaaggaagaatgatggggaccaaattagggaatttgcacgggagcaagttgaagagtctgaacaacctgagcatccagtccaagaatcctccccgtgcctctctcctccaactcccttgcccctcattgaaacgtctggtgatgttccccctatacttgaacaagtagaattacctcttacacaacgtagggaaactagaagtaatgctgggaaacctcctatacgtcttggctttgaacatattagctctaagcatgacattgcaaattatatctcatactcccacatttcacctgcatacaaaactttcattgcatcattacaagcagtgcctgttccgaaagactggagatgtgccaagcaagatcctaggtggaaagatgcaatgaaggaggagcttcatgcccttcaggagaacaagacatgggaacttgtgagacttccaccaGgaaaaagagcagtaagatgtaagtgagtatttacagtaaagcaaactcctgaagggaaggtggatagatacaaagcaagatcaattgcaaaaggttatagtcaaacttatgggattgactatgatgaaacatttgctcctgtggccaagatgggtatagtgagagctttggtgtcttctgcagttaactttggatggcctctacatcagctggatgtgaaaaatgctttcctttatggtgatctacaagaggtctatatggagattccccttggatttggaaataaccaaatggtaggaaaggtatgtaaactcaagagatcattatatggtttgaagcagtctcacgtgcatggtttgatagatttaggcgtgcactatgtgagatgggatattcccaatgcaatGgagatcacacggttttttatacacataagggttcatgtattaccatcttggcagtgtatgctgatgatatagtgatcaccggtgatgatgggggaagaaattaggtgcttgaaggaaatgtttggaaagacctttgaggtgaaggatcttggacctcttcgatacttccttgggattgagattgctcggtcgtcaaagggaatcgttctctcccaagggaaatatatccttgatctattggcagaaacatgaatgcttggatgtcgttcaagtgctacaccaattgataaaaatcatcaactatgtgctcagacaggtgatccagttgacaaggaggcttgtaggacgcttgATatatctgtgccatacaagacctgatatctcttatgtagtgagtgtggtaaatagatatatgcatgatcctaggtctggtcttttggaggcagctcatagaatcctaagatacttgaagggatggcactatggtgctccattgtgataataaatcagttatcaacattgcaaacaatccggttcagcatgatcacataaagcatatcgaaattgataggttgttcatcaaagagaaaattgATagtggagtgcttagcctagagtatactaaatcttgtgaacaactagctgattgtctaacaaagggattaggcccaagtgaatgagttattttgtaacaagatgggcatgatcgatatcttttgcccatcttgagggggagtgttggtgtaatatgcaactttatcaGggacctgcttgtaattctgttaaataaatatatgcatgtgtgggggtactggtcagtggtgaggccaatcattccccaattcccaaatcaatctacacatacctttgcaggagtctcttcttcatcagaactctcaccttcctttgcaggagtctctttttcatcagtactctcaccttcctttgcagtagtctcttcttcatcagaactcttaccttcataatcagcatcatcacttgaatcctatttgtcaatcatatcatacaaatgtatcgcaggattataatatatccaacacaattcatgactgcccatttttaataatgtcactgttacgtacctcattaccagtagattcactaactactgaaatatcattgtatcgttcattgttgtcatcatcagcttttgatttctcatagtgctctatttcctttacaaaagccttttgcatggcggatgcaactgtagcagactttgcaggaagtttacTtttctgtgcttctttgatcatattatctgaaagtttaacataaaaaaatatatcattcgaagattcgcttaccggctcacattagcatgtctagcagattctatcataaaatgtaacatggacgaagcacttcaaactacacaagcatactgatgtgaccatggttaccatagatacaaccatagttcacatcatagctcaactagaagacatcgccgtagaagttctaaaatccaattcggtcacctgcaacagtgctgatttcaaatggccgccaaatgtgcatacaagctccgtttttggcccatgagtacttgatggaaagctcttggagtcttatttccaactaatctagtCtcatctccaaattccatctcggtcgaccgcaatcacagaaactaggtgttgtgtcatctataatggacgtataggcttgtaacttcatttagggcctcgacccatgtgggatgtgcccaacctggtggagcacgactctagagaccccatagtcgtcctcccacctctttaaataactaggtacctcttcagggtttttcaggttttgtttagattaaagtttagctttgctactttgccatataatctcgtgacttgttagatcgttacggaattctaacttgttatttgtattcaattcttatttgcaatttacattgctttttatctcgctcttgcttgtttcttcgatttgcttgcgggaacaaggttgatctacaccaacaaggtcaacaaccgatggagaggtgtatcgatcgctaagacaacacgtctcgtacggttgaagtcgggtcgtcaacgtttctcccaaatcgtagttatcgttaactcactgaaagatcaagccaattatagccgtgagtgtattgagtggagcttatggtttatcaagtgataaaagcaatatgaaaccctgataccacttgataaaCcctgagctccgctcgatacgctcacgactacgatatgggagaaacgtttacgacccgactacaaccgtacgagacgttgttgtgttacgccttaacgatcgatacaccttttcgtgggttgttgatcttgccggtgtagattaaccttattcctgcaagcaaataaaaaaaaaacaagcaagaacaaaataaaaccaatctaaattacaaatagcaattgaatataaatgataatttgggattccgtaacgagcaaacagacgatctaacaaatcacgggattacacggcaaagtagaaaagctaaactttaatctaaacaaaacccgaaaaaacctgaaggggtacctagctatttaaggaggtgggaggatgaccatggggtccctaaagtcatgttccatcaagttggggcgcaccccacatgggccctacttggaccggggtcccagacgaagttataaacccataggcccattataggtgatgcaacacctagtttctgtgattgcgaccgactgagatggaatttggagatgagactagttccgttgggaagaagactcgaagagctttccatcgagtactcacgggctaaaaacggagctcgtatacacacattgggaatcagcactgttgtaggtgaccgaattggaatccagaacttctgcgacttgatcgcgatgtcttccagttgagctaatgtgaactatggttgtatctatggtagccatggtcacgccacatacactttatggaagttgaattagcgtagtattctataaaaaaagtaagcgttcttaaggcttataaagtaattattatgattagcaaagcatataccatctaacttggggtatagacgaatacctggtggaacctcctcatcagattcatcacctgaaacatcacatctcaagaattgtgattatcatgaagccaagtgtaggggaaacattagagatgaccaatttaccttcagaatcagtgaattttcccaaattctttacttgatagccacaaaaggcaactttgctgattagtgaggtgtggaatagttgaaagttcttcttgaaacagaagtcaaccttgatatgcggatgccttttggaggaaagcgtcccaatcgcaaacttctcatcattaacttcgacaaatactttcacattggagtcttttagcccgtaagcctcatcaagggctacctgcgatttaagttataacagtaagatgagacatcactataaataatgagacctggtaagaaaattgataatatgagagataacaagtactccctctgtctccatcctagaatatagcaacctagaacccaacttattacaatcctaggttgctatattctgagatggagggagtagaacataccgatgttagatgatacagggtatcctcaggacaaaagatctccttcttattgcacggctcaattaccactcctaataaacaataacattaatcacaaagttgtttttttttaatcttaatgagacagttgttatttaaatacactaaattggaaagaggaaacaaaccccaaaaatcgacgtccattgctgcttttgttaatttcttcccgagcttttagagatttggcctgttaaatcaaatcaacaaatggattaaatcagcatataattatcttctagattgacatgactaacatttaggtcaacaatagatgcactacaaagatctccaatgcatgcataattattgttagttatgaatgcgccaacatcagattaagaccatcccagaaagaatttcacttgggaaacccaactttataatgcatgtaaaatcctagattttacaggaactcaaatatatgtactgaataaggctaaccaatcagacaaataattagttcacctagaatttcaaggtgctaaaagcatgctagatcaaaagggactaaaagaaaaaaaaattacaagaaaatacatttgactctcaaagtcttcatttgccaaagaaagcaaatgtaaagggcggcggggaaacactattaacattatggtctagggcttatgagccggagagagataagagatgaagcgtctacctaccacccaccccgctcagcgatcaactgctataacggtcactggctagataaagcccctattgaatcgtccttgtcccgggcggacgttgtacaggcccgccggtcagcgcctgccctcctaccctatcgtaggtggatattgaagccggtttggcatctggtgcaacacaaggtgtaaagaagggttcgctgccatctggccaacaaccgcatttactcgttctgtgtagccagctcgccctatcctgcgttggctccaggtgaggtgcttccggtgtctagggataggccatcttaaggtagattgcaaggggaacatcggatgttatcgtttctggtaccttggccatgttgagcgtttctgcaagtttaacaaagaagagcacaagcgctcccctgtagctgacggctcccat
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| CDS seq | atgggagccgtcagctacaggggagcgcttgtgctcttctttgttaaacttgcagaaacgctcaacatggccaaggtagcccttgatgaggcttacgggctaaaagactccaatgtgaaagtatttgtcgaagttaatgatgagaagtttgcgattgggacgctttcctccaaaaggcatccgcatatcaaggttgacttctgtttcaagaagaactttcaactattccacacctcactaatcagcaaagttgccttttgtggctatcaagtaaagaatttgggaaaattcactgattctgaaggtgatgaatctgatgaggaggttccaccaggtattcgtctataccccaagttagatgataatatgatcaaagaagcacagaaaAgtaaacttcctgcaaagtctgctacagttgcatccgccatgcaaaaggcttttgtaaaggaaatagagcactatgagaaatcaaaagctgatgatgacaacaatgaacgatacaatgatatttcagtagttagtgaatctactggtaatgaggattcaagtgatgatgctgattatgaaggtaagagttctgatgaagaagagactactgcaaaggaaggtgagagtactgatgaaaaagagactcctgcaaaggaaggtgagagttctgatgaagaagagactcctgcaaagaatactaaagaggaaaatgaaccagtggtaacacccttgaagacatttccacatgagatggcaaagatagaagcaccaattacggacaacaaaActggtactaatactagcaagagaggtagtcatcttcaagttacaaaccctcacccagcaaaacaggcaaagaggacgcccataaagaacgacacgcctaagcgttctgctagctatgtctgcaactcatgcaaaaagcctttcaactcctctggtgctctgaaggatcattcaaaggcgaaacaccctgcaaccaattga
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| Protein seq | MGAVSYRGALVLFFVKLAETLNMAKVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPGIRLYPKLDDNMIKEAQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNNERYNDISVVSESTGNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKNTKEENEPVVTPLKTFPHEMAKIEAPITDNKTGTNTSKRGSHLQVTNPHPAKQAKRTPIKNDTPKRSASYVCNSCKKPFNSSGALKDHSKAKHPATN |
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| Function | Histone deacetylase HDT1 [UniProtKB/Swiss-Prot:Q8LJS2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0043490 | OsGoSa_01g0043490.02 | Chr01 | 40863446 | 40871685 | - | NAM | ||
| CDS seq | atgggagccgtcagctacaggggagcgcttgtgctcttctttgttaaacttgcagaaacgctcaacatggccaaggtagcccttgatgaggcttacgggctaaaagactccaatgtgaaagtatttgtcgaagttaatgatgagaagtttgcgattgggacgctttcctccaaaaggcatccgcatatcaaggttgacttctgtttcaagaagaactttcaactattccacacctcactaatcagcaaagttgccttttgtggctatcaagtaaagaatttgggaaaattcactgattctgaaggtgatgaatctgatgaggaggttccaccaggtattcgtctataccccaagttagatgataatatgatcaaagaagcacagaaaAgtaaacttcctgcaaagtctgctacagttgcatccgccatgcaaaaggcttttgtaaaggaaatagagcactatgagaaatcaaaagctgatgatgacaacaatgaacgatacaatgatatttcagtagttagtgaatctactggtaatgaggattcaagtgatgatgctgattatgaaggtaagagttctgatgaagaagagactactgcaaaggaaggtgagagtactgatgaaaaagagactcctgcaaaggaaggtgagagttctgatgaagaagagactcctgcaaagaatactaaagaggaaaatgaaccagtggtaacacccttgaagacatttccacatgagatggcaaagatagaagcaccaattacggacaacaaaActggtactaatactagcaagagaggtagtcatcttcaagttacaaaccctcacccagcaaaacaggcaaagaggacgcccataaagaacgacacgcctaagcgttctgctagctatgtctgcaactcatgcaaaaagcctttcaactcctctggtgctctgaaggatcattcaaaggcgaaacaccctgcaaccaattga
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| Protein seq | MGAVSYRGALVLFFVKLAETLNMAKVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPGIRLYPKLDDNMIKEAQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNNERYNDISVVSESTGNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKNTKEENEPVVTPLKTFPHEMAKIEAPITDNKTGTNTSKRGSHLQVTNPHPAKQAKRTPIKNDTPKRSASYVCNSCKKPFNSSGALKDHSKAKHPATN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0043490 | OsGoSa_01g0043490.01 | Chr01 | 40863446 | 40871685 | - | NAM | ||
| CDS seq | atgggagccgtcagctacaggggagcgcttgtgctcttctttgttaaacttgcagaaacgctcaacatggccaaggtagcccttgatgaggcttacgggctaaaagactccaatgtgaaagtatttgtcgaagttaatgatgagaagtttgcgattgggacgctttcctccaaaaggcatccgcatatcaaggttgacttctgtttcaagaagaactttcaactattccacacctcactaatcagcaaagttgccttttgtggctatcaagtaaagaatttgggaaaattcactgattctgaaggtgatgaatctgatgaggaggttccaccagataatatgatcaaagaagcacagaaaAgtaaacttcctgcaaagtctgctacagttgcatccgccatgcaaaaggcttttgtaaaggaaatagagcactatgagaaatcaaaagctgatgatgacaacaatgaacgatacaatgatatttcagtagttagtgaatctactggtaatgaggattcaagtgatgatgctgattatgaaggtaagagttctgatgaagaagagactactgcaaaggaaggtgagagtactgatgaaaaagagactcctgcaaaggaaggtgagagttctgatgaagaagagactcctgcaaagaatactaaagaggaaaatgaaccagtggtaacacccttgaagacatttccacatgagatggcaaagatagaagcaccaattacggacaacaaaActggtactaatactagcaagagaggtagtcatcttcaagttacaaaccctcacccagcaaaacaggcaaagaggacgcccataaagaacgacacgcctaagcgttctgctagctatgtctgcaactcatgcaaaaagcctttcaactcctctggtgctctgaaggatcattcaaaggcgaaacaccctgcaaccaattga
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| Protein seq | MGAVSYRGALVLFFVKLAETLNMAKVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPDNMIKEAQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNNERYNDISVVSESTGNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKNTKEENEPVVTPLKTFPHEMAKIEAPITDNKTGTNTSKRGSHLQVTNPHPAKQAKRTPIKNDTPKRSASYVCNSCKKPFNSSGALKDHSKAKHPATN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 40868254 | 40870048 | - | OsGoSa_01g0043490.02 | OsGoSa_01g0043490.02,OsGoSa_01g0043490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.462276 | 35.175518 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0909500 | RBH | 4.565744 | 3.877562 | 7.090122 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68160 | RBH | 2.751838 | 2.262084 | 1.451323 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0909500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044310 | RBH | 2.080773 | 15.694189 | 8.910149 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043870 | RBH | 0.793025 | 10.667901 | 7.316412 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044240 | RBH | 3.774445 | 11.318786 | 25.979313 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043700 | RBH | 0.779911 | 0.429517 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043270 | RBH | 22.146070 | 21.992575 | 25.836653 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0652800 | RBH | 12.4509005 | 30.3803415 | 25.1790535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042920 | RBH | 1.764326 | 2.641832 | 2.810865 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0653900 | RBH | 21.0466395 | 46.202454 | 44.581884 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043250 | RBH | 1.198028 | 0.374319 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043210 | RBH | 1.999734 | 24.130302 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043430 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043450 | RBH | 4.243422 | 2.809875 | 3.017849 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043260 | RBH | 2.407652 | 19.916309 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043650 | RBH | 3.203603 | 7.352071 | 6.775894 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043380 | RBH | 4.503141 | 40.286274 | 12.250978 |
