Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os01g0909500 OGI:01117270 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr01:39616243-39623317
Gene Symbol -
DNA seq

GTTCCATCCCCAGAACAATGAAACCGTTCAGCACTCATTCATAAAGAAACTGTGGTATCTACGTTCCAGAATCTTTTCACATAAAGTGTTCCAAAATTATGTTGAAGAGACCATCGTCTCGAATCCTAATATTGTTTCAGATGAGGCTAGGAAATAGCTGCTTCAAAAATATTCTCTCTCTCTCCCGGCGAAAAAAAAAAATTCAGTTACCTATGACTAACAATCTAACACAGACTAGTGTTATCTCGTATCAATTGGTTGCAGGGTGTTTCGCCTTTGAATGATCCTTCAGAGCACCAGAGGAGTTGAAAGTCCTGAGCAAGTTAGCAAGTGCCTATGTGAGGATATAGCAATATTTCAATGGTAAATCATTAAGTAAAAGGAACAATAATTTACTTTTTGCATGAGTTGCAGACATAGCTAGCAGAACGCTTAGGCGTGTCGTTCTTTATGGGCGTCCTCTTTGCCTGTTTTGCTGGGTGAGGGTTTGTAACTTGAAGATGACTACCTCTCTTGCTAGTATTAGTACCTGCACACAAGATCAACAAGAAGTATGAATTTGCAATCTTCATGACGAAAAAATTGTGAGTTCAACAAAAACAAATCAAAAGAAACAAATTCCAACCAGTTTTGTTGTCCGTAATTGGTGCTTCTATCTTTGCCATCTCATGTGGAAATGTCTTCAAGGGTGTTACCACTGGTTCATTTTCCTCTTTAGTATTCTGGGAGATCAAGGAAACAACAACAACAAAAAAGTTACAAGGTTTCTGAGAAATTAAGCATCAGAAACTATCATCCACTTAAGTATCTCATACTGTTGGTGTAATATGCAACTTTATGAGGGACCTACTTGTAATTCTGTTGAATAAAGATATGTATGTGTGGGGGTGCTGATCGGTGGTGAGGCCAACAAGCTCATTCCACCCCTCTCTCAGGCGTTAGGCAGCAGCAGCAGGAAGGCGGGAGAAGGTAGCAGCAGGAGCAGCACCGGCGTGCGGGGCAGCAGCAGCGCCGCCGCGCCACTCGGCGCGCTGGTAGCAGCCCCGCTGCGCGCACGCGAGGCCCTCAGGTTCGTGGGCTTCCTGGAGGAGAGGAGCTCTGTGTGCGCAAGCTAGGAGGAAGAAAAGACGGTACTGTTTTGGGAGTTGGATTTGGGACTGATTTGTGAGCTTGTTGTGGGAAAGAGAGCAAGTTTATTTCTGTTTCTTTGTTGACAGGTGCGGGAAGAAGCCTGGTCCAGTTATGTGATTTGGGTTGCTAAGAGCACAAGCGAGGATATGTTCCCGTTCTTTGCTTGCTGAAAACTTGATGGAATAAGAGTTGCCGTGATTGTGGTGAACACGGGCAGCAAGGAGTGTTAGTTGGCATCGCTCTAGGAGATGGATCCATTGAAAGGGGTTGAGGAATCATCGCTGGTCACTAAAGGCGAGATGAAAAGCCTACTACAAGACTTGATAGCTACTGGGATGATGGGGCCTAGAATAGGAGGGGCATCACCTGAAATAAAGCTAGAGCAAATGCCGAATGAAGTTAAGTTGGAGGAGAGCCAAAATTACTTGAGCTGGTCTAGAAGGACAAGATTGATGTTGAGGGCAAAAGGGGTAGAACACTATTTGGAGGAAACTTGTATTGAACCAGATGACAAGCTTAGTGTGGACTGGAAGGTGTGGAATTCCACCAACTCTACGGTGGCAACATGGTTAATGACCTCAGTGGCTCCATCCATTGCGAGGATGGTGGAGACAATTTCTAATGCATCAACTGTGTGGAAGACATTGAGCAAAATGTACTCAGGGGAAGACAATGCAATGATGATGGTTGAGGCTCAAGACAAGGTGGAGAACTTGAAGCAAGAGGGAAGAACTGTTCAAGAATATGCTAGTGAGTTGCAACAATTATGGGCAGATTTGGATCACTATGAGAGGGGGACTGGGAGGAGGATTGGGACTGGAGTCAGGCGCAATGGGTTGTGGTACATCAATAATGAAGAAGTAGGATTGGCTGCAGTTGCAGGAAATGCTGAGGAGATTATTTTGCTTCATTGCCGGTTAGGACATCCATCATTTGATAACGTAAGTAAGCTATATCCAATTCTCTTTAATGGAGTGAACAAAAGTAGACTTGTCTGTGACGCTTGCGAATTTGGCAAACATACACGGACCCCATATGTTGGGAGTGGCCTCCGTAGTTATGAACCCTTTATATTAATACATTATGATGTTTGGGGACCATGGCCAGTTACTTTAGTGAGTGGATTTAAGTGGTTTGTTTCCTTCATTGATTGTTACACTCGAATGACTTGGATTTATGTACTTAAGCACAAGAATGATGTTCTTCGATGCTTCCAAGATTTTCATAAATTCAAATCAGTTTGATGCAAATGTTCGAATCATTCGAACTGATAATGGGACTGAGTATATCAACAACGAATTTGTCTCTTATGTCTTGGATCAAGGGATCATACATCAAACCACTTGTCCTGGAACCCCTCCTCAAAATGGTGTAGCTGAGAGGAAGAACCGACATTTGTTGGAGGTGGCACGTTCACTTATGTTTCAGATGAATGTACCCAAATACTTGTGGAAGTGATGACTGCTGCATATCTTATTAATCGCATATCTTGTGGAGATGACAAGGAAGAATGATGGGGACCAAATTAGGGAATTTGCACGGGAGCAAGTTGAAGAGTCTGAACAACCTGAGCATCCAGTCCAAGAATCCTCCCCGTGCCTCTCTCCTCCAACTCCCTTGCCCCTCATTGAAACGTCTGGTGATGTTCCCCCTATACTTGAACAAGTAGAATTACCTCTTACACAACGTAGGGAAACTAGAAGTAATGCTGGGAAACCTCCTATACGTCTTGGCTTTGAACATATTAGCTCTAAGCATGACATTGCAAATTATATCTCATACTCCCACATTTCACCTGCATACAAAACTTTCATTGCATCATTACAAGCAGTGCCTGTTCCGAAAGACTGGAGATGTGCCAAGCAAGATCCTAGGTGGAAAGATGCAATGAAGGAGGAGCTTCATGCCCTTCAGGAGAACAAGACATGGGAACTTGTGAGACTTCCACCAGGAAAAAGAGCAGTAAGATGTAAGTGAGTATTTACAGTAAAGCAAACTCCTGAAGGGAAGGTGGATAGATACAAAGCAAGATCAATTGCAAAAGGTTATAGTCAAACTTATGGGATTGACTATGATGAAACATTTGCTCCTGTGGCCAAGATGGGTATAGTGAGAGCTTTGGTGTCTTCTGCAGTTAACTTTGGATGGCCTCTACATCAGCTGGATGTGAAAAATGCTTTCCTTTATGGTGATCTACAAGAGGTCTATATGGAGATTCCCCTTGGATTTGGAAATAACCAAACGGTAGGAAAGGTATGTAAACTCAAGAGATCATTATATGGTTTGAAGCAGTCTCACGTGCATGGTTTGATAGATTTAGGCGTGCACTATGTGAGATGGGATATTCCCAATGCAATGGAGATCACACGGTTTTTTATACACATAAGGGTTCATGTATTACCATCTTGGCAGTGTATGCTGATGATATAGTGATCACCGGTGATGATGGGGGAAGAAATTAGGTGCTTGAAGGAAATGTTTGGAAAGACCTTTGAGGTGAAGGATCTTGGACCTCTTCGATACTTCCTTGGGATTGAGATTGCTCGGTCGTCAAAGGGAATCGTTCTCTCCCAAGGGAAATATATCCTTGATCTATTGGCAGAAACATGAATGCTTGGATGTCGTTCAAGTGCTACACCAATTGATAAAAATCATCAACTATGTGCTCAGACAGGTGATCCAGTTGACAAGGAGGCTTGTAGGACGCTTGATATATCTGTGCCATACAAGACCTGATATCTCTTATGTAGTGAGTGTGGTAAATAGATATATGCATGATCCTAGGTCTGGTCTTTTGGAGGCAGCTCATAGAATCCTAAGATACTTGAAGGGATGGCACTATGGTGCTCCATTGTGATAATAAATCAGTTATCAGCATTGCAAACAATCCGGTTCAGCATGATCACATAAAGCATATCGAAATTGATAGGTTGTTCATCAAAGAGAAAATTGATAGTGGAGTGCTTAGCCTAGAGTATACTAAATCTTGTGAACAACTAGCTGATTGTCTAACAAAGGGATTAGGCCCAAGTGAATGAGTTATTTTGTAACAAGATGGGCATGATCGATATCTTTTGCCCATCTTGAGGGGGAGTGTTGGTGTAATATGCAACTTTATCAGGGACCTGCTTGTAATTCTGTTAAATAAATATATGCATGTGTGGGGGTACTGGTCAGTGGTGAGGCCAATCATTCCCCAATTCCCAAATCAATCTACACATACCTTTGCAGGAGTCTCTTCTTCATCAGAACTCTCACCTTCCTTTGCAGGAGTCTCTTTTTCATCAGTACTCTCACCTTCCTTTGCAGTAGTCTCTTCTTCATCAGAACTCTTACCTTCATAATCAGCATCATCACTTGAATCCTATTTGTCAATCATATCATACAAATGTATCGCAGGATTATAATATATCCAACACAATTCATGACTGCTCATTTTTAATAATGTCACTGTTACGTACCTCATTACCAGTAGATTCACCAACTACTGAAATATCACGGTATCGTTCATTGTTGTCATCATCAGCTTTTGATTTCTCATAGTGCTCTATTTCCTTTACAAAAGCCTTTTGCATGGCGGATGCAACTGTAGCAGACTTTGCAGGAAGTTTACTTTTCTGTGCTTCTTTGATCATATTATCTGAAAGTTTAACATAAAAAAATATATCATTCGAAGATTCGCTTACCGGCTCACATTAGCATGTCTAGCAGATTCTATCATAAAATGTAACATGGACGAAGCACTTCAAACTACACAAGCATACTGATGTGACCATGGTTACCATAGATACAACCATAGTTCACATCATAGCTCAACTAGAAGACATCGCCGTAGAAGTTCTAAAATCCAATTCGGTCACCTGCAACAGTGCTGATTTCAAATGGCCGCCAAATGTGCATACAAGCTCCGTTTTTGGCCCATGAGTACTTGATGGAAAGCTCTTGGAGTCTTATTTCCAACTAATCTAGTCTCATCTCCAAATTCCATCTCGGTCGACCGCAATCACAGAAACTAGGTGTTGCGTCATCTATAATGGACGTATAGGCTTGTAACTTCATTTAGGGCCTCGACCCAAGTGGGATGTGCCCAACCTGGTGGAGCACGACTCTAGAGACCCCATGGTCGTCCTCCCACCTCTTTAAATAACTAGGTACCTCTTCAGGGTTTTTCAGGTTTTGTTTAGATTAAAGTTTAGCTTTGCTACTTTGCCATATAATCTCGTGACTTGTTAGATCGTTACGGAATTCTAACTTGTTATTTGTATTCAATTCTTATTTGCAATTTACATTGCTTTTTATCTCGCTCTTGCTTGTTTCTTCGATTTGCTTGCGGGAACAAGGTTGATCTACACCCGTACGATATGGGAGAAACGTTTACGACCTGACTACAACCGTACGAGACGTTGTTGTGTTACGCCTTAACGATCGATACACCTTTTCGTGGGTTGTTGATCTTGCCGGTATAGATTAACCTTATTCCTGCAAGCAAATAAAAAAAAAACAAGCAAGAACAAAATAAAACCAATCTAAATTACAAATAGCAATTGAATATAAATGATAATTTGGGATTCCGTAACGAGCAAACAGACGATCTAACAAATCACGGGATTACACGGCAAAGTAGAAAAGCTAAACTTTAATCTAAACAAAACCCGAAAAAACCTGAAGGGGTACCTAGCTATTTAAGGAGGTGGGAGGATGACCATGGGGTCCCTAAAGTCATGTTCCATCAAGTTGGGGCGCACCCCACATGGGCCCTACTTGGACCGGGGTCCCAGACGAAGTTATAAACCCATAGGCCCATTATAGGTGATGCAACACCTAGTTTCTGTGATTGCGACCGACTGAGATGGAATTTGGAGATGAGACTAGTTCCGTTGGGAAGAAGACTCGAAGAGCTTTCCATCGAGTACTCACGGGCTAAAAACGGAGCTCGTATACACACATTGGGAATCAGCACTGTTGTAGGTGACCGAATTGGAATCCAGAACTTCTGCGACTTGATCGCGATGTCTTCCAGTTGAGCTAATGTGAACTATGGTTGTATCTATGGTAGCCATGGTCACGCCACATACACTTTATGGAAGTTGAATTAGCGTAGTATTCTATAAAAAAGGTAAGCGTTCTTAAGGCTTATAAAGTAATTATTATGATTAGCAAAGCATATACCATCTAACTTGGGGTATAGACGAATACCTGGTGGAACCTCCTCATCAGATTCATCACCTGAAACATCACATCTCAAGAATTGTGATTATCATGAAGCCAAGTGTAGGGGAAACATTAGAGATGACCAATTTACCTTCAGAATCAGTGAATTTTCCCAAATTCTTTACTTGATAGCCACAAAAGGCAACTTTGCTGATTAGTGAGGTGTGGAATAGTTGAAAGTTCTTCTTGAAACAGAAGTCAACCTTGATATGCGGATGCCTTTTGGAGGAAAGCGTCCCAATCGCAAACTTCTCATCATTAACTTCGACAAATACTTTCACATTGGAGTCTTTTAGCCCGTAAGCCTCATCAAGGGCTACCTGCGATTTAAGTTATAACAGTAAGATGAGACATCACTATAAATAATGAGACCTGGTAAGAAAATTGATAATATGAGAGATAACAAGTACTCCCTCTGTCTCCATCCTAGAATATAGCAACCTAGAACCCAACTTATTACAATCCTAGGTTGCTATATTCTGAGATGGAGGGAGTAGAACATACCGATGTTAGATGATACAGGGTATCCTCAGGACAAAAGATCTCCTTCTTATTGCACGGCTCAATTACCACTCCTAATAAACAATAACATTAATCACAAAGTTGTTTTTTTTTAATCTTAATGAGACAGTTGTTATTTAAATACACTAAATTGGAAAGAGGAAACAAACCCCAAAAATCGACGTCCATTGCTGCTTTTGTTATTTTCTTCCCGAGCTTTTAGAGATTTGGC

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CDS seq

ATGGACGTCGATTTTTGGGGAGTGGTAATTGAGCCGTGCAATAAGAAGGAGATCTTTTGTCCTGAGGATACCCTGTATCATCTAACATCGGTAGCCCTTGATGAGGCTTACGGGCTAAAAGACTCCAATGTGAAAGTATTTGTCGAAGTTAATGATGAGAAGTTTGCGATTGGGACGCTTTCCTCCAAAAGGCATCCGCATATCAAGGTTGACTTCTGTTTCAAGAAGAACTTTCAACTATTCCACACCTCACTAATCAGCAAAGTTGCCTTTTGTGGCTATCAAGTAAAGAATTTGGGAAAATTCACTGATTCTGAAGGTGATGAATCTGATGAGGAGGTTCCACCAGGTATTCGTCTATACCCCAAGTTAGATGATAATATGATCAAAGAAGCACAGAAAAGTAAACTTCCTGCAAAGTCTGCTACAGTTGCATCCGCCATGCAAAAGGCTTTTGTAAAGGAAATAGAGCACTATGAGAAATCAAAAGCTGATGATGACAACAATGAACGATACCGTGATATTTCAGTAGTTGGTGAATCTACTGGTAATGAGGATTCAAGTGATGATGCTGATTATGAAGGTAAGAGTTCTGATGAAGAAGAGACTACTGCAAAGGAAGGTGAGAGTACTGATGAAAAAGAGACTCCTGCAAAGGAAGGTGAGAGTTCTGATGAAGAAGAGACTCCTGCAAAGGTATGTGTAGATTGA

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Protein seq

MDVDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPGIRLYPKLDDNMIKEAQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNNERYRDISVVGESTGNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKVCVD

Function Histone deacetylase HDT2 [UniProtKB/Swiss-Prot:Q56WH4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os01g0909500 Os01t0909500-02 Chr01 39616243 39623317 - irgsp1_rep
CDS seq

ATGGACGTCGATTTTTGGGGAGTGGTAATTGAGCCGTGCAATAAGAAGGAGATCTTTTGTCCTGAGGATACCCTGTATCATCTAACATCGGTAGCCCTTGATGAGGCTTACGGGCTAAAAGACTCCAATGTGAAAGTATTTGTCGAAGTTAATGATGAGAAGTTTGCGATTGGGACGCTTTCCTCCAAAAGGCATCCGCATATCAAGGTTGACTTCTGTTTCAAGAAGAACTTTCAACTATTCCACACCTCACTAATCAGCAAAGTTGCCTTTTGTGGCTATCAAGTAAAGAATTTGGGAAAATTCACTGATTCTGAAGGTGATGAATCTGATGAGGAGGTTCCACCAGGTATTCGTCTATACCCCAAGTTAGATGATAATATGATCAAAGAAGCACAGAAAAGTAAACTTCCTGCAAAGTCTGCTACAGTTGCATCCGCCATGCAAAAGGCTTTTGTAAAGGAAATAGAGCACTATGAGAAATCAAAAGCTGATGATGACAACAATGAACGATACCGTGATATTTCAGTAGTTGGTGAATCTACTGGTAATGAGGATTCAAGTGATGATGCTGATTATGAAGGTAAGAGTTCTGATGAAGAAGAGACTACTGCAAAGGAAGGTGAGAGTACTGATGAAAAAGAGACTCCTGCAAAGGAAGGTGAGAGTTCTGATGAAGAAGAGACTCCTGCAAAGGTATGTGTAGATTGA

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Protein seq

MDVDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPGIRLYPKLDDNMIKEAQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNNERYRDISVVGESTGNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKVCVD

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Gene Transcript Chromosome Start End Strand Source
Os01g0909500 Os01t0909500-03 Chr01 39618597 39623317 - irgsp1_rep
CDS seq

ATGGACGTCGATTTTTGGGGAGTGGTAATTGAGCCGTGCAATAAGAAGGAGATCTTTTGTCCTGAGGATACCCTGTATCATCTAACATCGGTAGCCCTTGATGAGGCTTACGGGCTAAAAGACTCCAATGTGAAAGTATTTGTCGAAGTTAATGATGAGAAGTTTGCGATTGGGACGCTTTCCTCCAAAAGGCATCCGCATATCAAGGTTGACTTCTGTTTCAAGAAGAACTTTCAACTATTCCACACCTCACTAATCAGCAAAGTTGCCTTTTGTGGCTATCAAGTAAAGAATTTGGGAAAATTCACTGATTCTGAAGGTGATGAATCTGATGAGGAGGTTCCACCAGATAATATGATCAAAGAAGCACAGAAAAGTAAACTTCCTGCAAAGTCTGCTACAGTTGCATCCGCCATGCAAAAGGCTTTTGTAAAGGAAATAGAGCACTATGAGAAATCAAAAGCTGATGATGACAACAATGAACGATACCGTGATATTTCAGTAGTTGGTGAATCTACTGGTAATGAGGATTCAAGTGATGATGCTGATTATGAAGGTAAGAGTTCTGATGAAGAAGAGACTACTGCAAAGGAAGGTGAGAGTACTGATGAAAAAGAGACTCCTGCAAAGGAAGGTGAGAGTTCTGATGAAGAAGAGACTCCTGCAAAGGTATGTGTAGATTGA

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Protein seq

MDVDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPDNMIKEAQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNNERYRDISVVGESTGNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKVCVD

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0909500 RBH 4.565744 3.877562 7.090122
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g68160 RBH 2.751838 2.262084 1.451323
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0044310 RBH 2.080773 15.694189 8.910149
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0043870 RBH 0.793025 10.667901 7.316412
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0044240 RBH 3.774445 11.318786 25.979313
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0043700 RBH 0.779911 0.429517 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0043270 RBH 22.146070 21.992575 25.836653
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0652800 RBH 12.4509005 30.3803415 25.1790535
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0042920 RBH 1.764326 2.641832 2.810865
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0653900 RBH 21.0466395 46.202454 44.581884
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0043250 RBH 1.198028 0.374319 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0043210 RBH 1.999734 24.130302 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0043490 RBH 8.462276 35.175518 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0043450 RBH 4.243422 2.809875 3.017849
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0043260 RBH 2.407652 19.916309 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G043650 RBH 3.203603 7.352071 6.775894
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0043380 RBH 4.503141 40.286274 12.250978
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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