Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0036690 | OGI:01103280 | 7/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:35672738-35673473 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacaggctcacagcccccgccggcgaccgccacacggcacgaacccgtccgaccaggaggaggggagtggagcggcaacaacaggactggcggaggcgagggaagtcggaggagaggggcagcgtgggccgtggggggacgttgctgatcagatactgaataggaaaaacggcggggcgcaggggagaagaaagacgaaggggccgcgtacctagcagcacgctcatcgagtcgactacccatcggcaggaacgacgccgacgcgcccaacgcggcctcgtactgcagtcgccgcccaaaccacccacagccgccgccgacacgacagaccttgcttccaactgtcgccgccaccgacaaactttgcatcgcctccgtgccgactcgacggtcgccaactcctcctccacaccgagatccacctcccccgatcagcacgaggtggggatggcggcatgaggcatcactggggaggaggaggtgcaggagggcgagcggcggcgtggatgggtcggcaacggaggcagatttgaggagagggcagtggtggtggtgcttagcacgcccttggatctcgacggcctctccggcctggtgtccggtgcgacagcatggcgtccgtctcagcgcaccccgccattggtcgccggaggagttgggcttgaagtagccgagctgcctcctgatgtaggccagcgtcctcccatcccggtgcgccgcgccgtacagaaacat
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| CDS seq | atgtttctgtacggcgcggcgcaccgggatgggaggacgctggcctacatcaggaggcagctcggctacttcaagcccaactcctccggcgaccaatggcggggtgcgctgagacggacgccatgctgtcgcaccggacaccaggccggagaggccgtcgagatccaagggcgtgctaagcaccaccaccactgccctctcctcaaatctgcctccgttgccgacccatccacgccgccgctcgccctcctgcacctcctcctccccagtgatgcctcatgccgccatccccacctcgtgctgatcgggggaggtggatctcggtgtggaggaggagttggcgaccgtcgagtcggcacggaggcgatgcaaagtttgtcggtggcggcgacagttggaagcaaggtctgtcgtgtcggcggcggctgtgggtggtttgggcggcgactgcagtacgaggccgcgttgggcgcgtcggcgtcgttcctgccgatgggtagtcgactcgatgagcgtgctgctagcaacgtccccccacggcccacgctgcccctctcctccgacttccctcgcctccgccagtcctgttgttgccgctccactcccctcctcctggtcggacgggttcgtgccgtgtggcggtcgccggcgggggctgtgagcctgtga
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| Protein seq | MFLYGAAHRDGRTLAYIRRQLGYFKPNSSGDQWRGALRRTPCCRTGHQAGEAVEIQGRAKHHHHCPLLKSASVADPSTPPLALLHLLLPSDASCRHPHLVLIGGGGSRCGGGVGDRRVGTEAMQSLSVAATVGSKVCRVGGGCGWFGRRLQYEAALGASASFLPMGSRLDERAASNVPPRPTLPLSSDFPRLRQSCCCRSTPLLLVGRVRAVWRSPAGAVSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0036690 | OsGoSa_01g0036690.01 | Chr01 | 35672738 | 35673473 | - | NAM | ||
| CDS seq | atgtttctgtacggcgcggcgcaccgggatgggaggacgctggcctacatcaggaggcagctcggctacttcaagcccaactcctccggcgaccaatggcggggtgcgctgagacggacgccatgctgtcgcaccggacaccaggccggagaggccgtcgagatccaagggcgtgctaagcaccaccaccactgccctctcctcaaatctgcctccgttgccgacccatccacgccgccgctcgccctcctgcacctcctcctccccagtgatgcctcatgccgccatccccacctcgtgctgatcgggggaggtggatctcggtgtggaggaggagttggcgaccgtcgagtcggcacggaggcgatgcaaagtttgtcggtggcggcgacagttggaagcaaggtctgtcgtgtcggcggcggctgtgggtggtttgggcggcgactgcagtacgaggccgcgttgggcgcgtcggcgtcgttcctgccgatgggtagtcgactcgatgagcgtgctgctagcaacgtccccccacggcccacgctgcccctctcctccgacttccctcgcctccgccagtcctgttgttgccgctccactcccctcctcctggtcggacgggttcgtgccgtgtggcggtcgccggcgggggctgtgagcctgtga
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| Protein seq | MFLYGAAHRDGRTLAYIRRQLGYFKPNSSGDQWRGALRRTPCCRTGHQAGEAVEIQGRAKHHHHCPLLKSASVADPSTPPLALLHLLLPSDASCRHPHLVLIGGGGSRCGGGVGDRRVGTEAMQSLSVAATVGSKVCRVGGGCGWFGRRLQYEAALGASASFLPMGSRLDERAASNVPPRPTLPLSSDFPRLRQSCCCRSTPLLLVGRVRAVWRSPAGAVSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.777586 | 58.631989 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036510 | RBH | 0.000000 | 1.463495 | 8.985621 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0569400 | SBH | 9.419765 | 23.370115 | 14.115067 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036410 | RBH | 0.214151 | 0.180425 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036470 | RBH | 0.691993 | 15.601241 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036780 | RBH | 0.925477 | 1.039349 | 2.254956 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037040 | RBH | 0.000000 | 1.335476 | 2.591790 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036740 | RBH | 2.706378 | 8.462762 | 6.510002 |
