Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0032210 | OGI:01093490 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:32191813-32197502 | ||||||||
| Gene Symbol | OsLysM-RLK4 | ||||||||||
| DNA seq | gaaatggtgcaagatcattgcattagaacttgcaaggcacatttggtatacatacatggttacatatcacccaccaagaaatatattgcactgtggtagatactttgaaaagaagatgcagaaaactgctcaactgggcaagaaaccaacaaaatgcaggagaaggttacaggggaaaacgcctctagtggagcagggaaggagatcaccgaagagcgcatgggatagcaccgtagcaaccaggccaatcttacaggatcacctcccagccacaagaccactgaacacttggctgttcccagctagcgtcgcttcccactcgatcgacgacagcagtatttgcgatagcgtgattactgcctgcttcatgtctggccgaagaacaggatcttcctccacgcactgtttcgctagcatggccatctttataagaagaatttagagtgagatttagctttgaagcaaaggtatgtgaaatgtgcaggagatgttgatcatcaagcaccaacagattttattgtgcataccttgtatacacagtcatgtggatacaggtccattagattagggtcaatgcaggctttcaggctccccatatacattgagttacgacaattctttagtgcactcaacatctgcattgttaaaactaaattagttcaaaacttttggagtcaaaatagcaagtaaaatatactaaaacttcaataaagccagtgaaaaacactgcaacttgggatggcaaaataattctaagcccgtaagttataatgggcatatatgttcaattgcttatgctgaacctagaaaacttacaactgatgccaaggaacgcctttctgagtttgatccttcgttcaatccatcagtccttgtaattgcctcctttccagatattaactcaaaaagtactactccaaaagcataaacatcatttttcgtagttgccaggccatcgcgcaagtatctacaggaataaatgaaatgtcaggattgagctagatatttttcttttccaaatccatactgagctaccagaaaatgtactcactcaggggccaagtaaccaaatgtacccacaacttttgtgacagaagcctctgcatcagttgacttcactaccagttttgcaagaccaaaatctgaaatctacggagacagaaaatgcaggtaaacaagctgttctaaatggtgccaggagaaaacaaatcagtaaacaaatttcaaatcaattaacctttgctctgaaggattcatcgagcaagatgttactcgatttgatgtccctgtgaacataatgatcctttgtatgctcatgaatgtattcaagtcctctagccgcatcaagagcaatttggaccctgtagatccaagacaatgatgtgtaacctgaaaaagaaacaacacaaaatcaatcaataacgatagaaaatgtatgtgtgttcagaaaagaaaagttaacaaaacttgagttagcagcaatcaagaaatgttctcaagcagcaatattttagaacttgtacataagggttgcttttgattggtacctactcaacaaatacaatatcaaaactgctggaagtggaaacattacatggcgagattacccaagttaaacagaaagcaattagtaaatcactcgtacaagtcctaaatgatggtatacctttgctttgaggatcatgaaggtgattcttgagtgaacctttttgagagtactcgtaaatcaggtatagttcatccttgcttgctgcatagccaatcaactctacctttgacaaatcatgggtaacacaaatgaaattcaataaacaggatataagacataatctattagaaggatttacacaactgtaaaatggcataccagactggcatgatggaccttacaaagaactttcatctccactataaactctttagttttagttgctgtcattctctttatagcgacctcctatgaaaaaacatatttgttattggcaagggaaaatcacaacagttttgcatggatatggtcagctcagatcacatacctggtctcgaagaacaccataataaacagagccgtatgtaccatgacccagaagatttgcatcagaaaatgaatcggttgatgcaagtatttcttgataggtaaacacaatgggcttctCcctatcaaacacgtccactacaacacctgcatgagaggaaaattgagaacagcttgtatgtgagaggaacgaaagaaaattagaacaaatcaaagcagagcgttctaggctgctagaaatggcttgtcacactaagaaatcatgaagttgtttagttgtgaatttgtatcttgacgttttgttttctttgatattatttggacaatgtacttcagtatagaagttcagatcatcagatgtgtttggtgctacttgaactcatacaaaaatttgaacagatcgtattcctgcttaaatcattgcaggaaaagcaactaagcgatgctgacatgagtgtcatatgcaatgacaatataacattttgaaaaaacaaaacccctaagggatatgcatatgacaacatttcgatctttaatatgcctatataaggcactagattcatcaggccactcctatattaatatccacgcaaaatgaactcagcaaaacccattcaccactgcattgccgcgctgtgcagatgcagtggccaggaattattCccatcatatatatacaaaaaaaaaacatgttatgcagcacaatgatggttaaaaggagatgaactaaccttttggggtattcatatgatgatcactgccatccgttcttgattgtttcacatttccaaattggcagcataagtatcttccagaaccataacaaaaactaccactcttaagaagttgaaacttgtgtgatatagactggtctgggctctttccctggttatttggagcttggggattgtattgggagagcttgcacagaacaagtgcaaggagagcaatagcaatcaaagcaagtgcaactcccatgctgccaataacccatccataagggaattttgtggaatgatgttctgatacatctgccgatgtaattcagaaaaatacactgttagtttatcataaaaaggaacatctcaattgtaggctacccaacctaacaaaaccaaaatatttcaacattaatacttcaagaaaacaataggacaggatcctcagaatgaagtgccaacaatgtggtagcatgttatacaactattagcattaagtgttctcagaatatcatatagctgccAaaaaaaaaaaaacctagaaaacaaagtgcatcaactctaacaggtacctccatacctgagaatgtattttgtgcgggtgctggcgcaggagtaggagaggaaggagacatcacgggatatggttgtccaggaactgcacatgacatagttttacaggaatgaagccAaaaaaaaaaaaggtaaaagcaagaactatgcccaaaagaaaccttacaagctagaagagaggtatccaaaataacaaaataaaacatcataaaagaacaaagtggaataatatcattgtatttgtaccaaaaagggagtgctatacagatatgaatgataacattgaacaaggttaacccgcaaaaatgcaaaataagaaaataagatgaagcacctagctaaccAaaaaggccaatattgccaaatattaaacgtattgtggtccttgcctgtaacttagggtctcattctattaaatacatcaaacagatagtaccttatgtttggtgacaacacaatttggttaaattcttagtaaaacttagaagcatggcatgtgtttcgagtacaatcattcgatatcacaatgtgcctccttgtttgtgccaaatttgtctgtagcagcacatcatcagatgccaccaaccagtctaggaatgaagggattattttactccattcagtatagtctctacaggcaatcatatggacctcacaactccatggtggtaacaattttcagagatttgtttaggctgaactaaatggtaatgagcactttacgtgtttcagattgttattttactccattcagtatagtctctacaggcaatcatatggacctcacaactccatggtggtaacaattttcagagatttgtttaggctgaactaaatggtaatgagcactttacgtgtttcagattgtgttcatgctattaagttgcatgcaccagccagttgcacttaaaagcctaagtggtaacaattttcagagatttgtttaggctgaactaaatgagatttgtttaggctgaactaaatggtaatgagcactttacgtgtttcagattgtgttcatgctattaagttgcatgcaccagccagttgcacctaaaagcctaagctaagtggtaacaattttcagagatttgtttaggtacgtgtttcagattgtgttcatgctattaagttgcatacaccagccagttgcacctaaaagcctaagctgatagggaaaagcgggcaattcactttatacactccaacactccccctcacgcgagaCcccctcaagtctcaagcgtggaatattggagtgggctgcaattattttatttaattgcgcgccagccaggattcgaactcgagacctctggctctgataccatattaagttgcatgcaccagccagttgcacctaaaagcctaagctgatagggaaagacgggcaattcactttatacactccaacacatgctccttcctatctgaggtgatctcaagcaagaaatgaactgttaaatccagttcaatatagctgattactatgtaatgggcaagcatctctgttcctccctcattaaataacgctgcatctataaattattagaccaattaatttcaccatgttcatgaaataaatggtaaattctcggttcagccaaaaagaaaaatgcagtataccgtgtgtaaatagggaagtttgattgatcaaattgccggagtgaatgatcgctaaacatttgttcacctgagttgagtgggatgtagtacacctttcccgtggttataggatcagggccggccatgccattggcggcctcgatggcgtccatgctggccccgaaccgacttgatagcgattccaccgtgtctccgtcgacgccgacgtagctgaggagatagttccaggggccggatgagcagccacagagcaggtggagagccaccacggcgccggggcgcggcggccgcagagccggtccgcccggcggcggcacggctagccccgcgtacgccgcggcagccacgtcggccgccgtggcgttcgccgtcgccccggcggcggcggaggggacagtgtaggtcgtattggcgaggtatgtgcgggaggcgaggcaggagcagttcttgcggacgaacgcgtacccggggctggcggccgcgtcggccgtgatgtcccccggcgcggcgtcgaacatggactccagcacggaggcgttcgcggcctcgccggccgccgggaacgcgacgaacgccgtgcagacgcgcgagaggtcggagcaggggagcggcgccgaggcggtgacattgccgggggcggcgtcatcaccggcgacttcgccgggggaggcgagcgccaggaagatgaggaggatgagaagcccgggcgcgggcgggcggcggcggggaggcggcat
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| CDS seq | atgccgcctccccgccgccgcccgcccgcgcccgggcttctcatcctcctcatcttcctggcgctcgcctcccccggcgaagtcgccggtgatgacgccgcccccggcaatgtcaccgcctcggcgccgctcccctgctccgacctctcgcgcgtctgcacggcgttcgtcgcgttcccggcggccggcgaggccgcgaacgcctccgtgctggagtccatgttcgacgccgcgccgggggacatcacggccgacgcggccgccagccccgggtacgcgttcgtccgcaagaactgctcctgcctcgcctcccgcacatacctcgccaatacgacctacactgtcccctccgccgccgccggggcgacggcgaacgccacggcggccgacgtggctgccgcggcgtacgcggggctagccgtgccgccgccgggcggaccggctctgcggccgccgcgccccggcgccgtggtggctctccacctgctctgtggctgctcatccggcccctggaactatctcctcagctacgtcggcgtcgacggagacacggtggaatcgctatcaagtcggttcggggccagcatggacgccatcgaggccgccaatggcatggccggccctgatcctataaccacgggaaaggtgtactacatcccactcaactcaggtgaacaaatgtttagcgatcattcactccggcaatttgatcaatcaaacttccctatttacacacgttcctggacaaccatatcccgtgatgtctccttcctctcctactcctgcgccagcacccgcacaaaatacattctcaggtatggagatgtatcagaacatcattccacaaaattcccttatggatgggttattggcagcatgggagttgcacttgctttgattgctattgctctccttgcacttgttctgtgcaagctctcccaatacaatccccaagctccaaataaccagggaaagagcccagaccagtctatatcacacaagtttcaacttcttaagagtggtagtttttgttatggttctggaagatacttatgctgccaatttggaaatgtgaaacaatcaagaacggatggcagtgatcatcatatgaataccccaaaaggtgttgtagtggacgtgtttgataggGagaagcccattgtgtttacctatcaagaaatacttgcatcaaccgattcattttctgatgcaaatcttctgggtcatggtacatacggctctgtttattatggtgttcttcgagaccaggaggtcgctataaagagaatgacagcaactaaaactaaagagtttatagtggagatgaaagttctttgtaaggtccatcatgccagtctggtagagttgattggctatgcagcaagcaaggatgaactatacctgatttacgagtactctcaaaaaggttcactcaagaatcaccttcatgatcctcaaagcaaaggttacacatcattgtcttggatctacagggtccaaattgctcttgatgcggctagaggacttgaatacattcatgagcatacaaaggatcattatgttcacagggacatcaaatcgagtaacatcttgctcgatgaatccttcagagcaaagatttcagattttggtcttgcaaaactggtagtgaagtcaactgatgcagaggcttctgtcacaaaagttgtgggtacatttggttacttggcccctgaatacttgcgcgatggcctggcaactacgaaaaatgatgtttatgcttttggagtagtactttttgagttaatatctggaaaggaggcaattacaaggactgatggattgaacgaaggatcaaactcagaaaggcgttccttggcatcagttatgttgagtgcactaaagaattgtcgtaactcaatgtatatggggagcctgaaagcctgcattgaccctaatctaatggacctgtatccacatgactgtgtatacaagatggccatgctagcgaaacagtgcgtggaggaagatcctgttcttcggccagacatgaagcaggcagtaatcacgctatcgcaaatactgctgtcgtcgatcgagtgggaagcgacgctagctgggaacagccaagtgttcagtggtcttgtggctgggaggtga
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| Protein seq | MPPPRRRPPAPGLLILLIFLALASPGEVAGDDAAPGNVTASAPLPCSDLSRVCTAFVAFPAAGEAANASVLESMFDAAPGDITADAAASPGYAFVRKNCSCLASRTYLANTTYTVPSAAAGATANATAADVAAAAYAGLAVPPPGGPALRPPRPGAVVALHLLCGCSSGPWNYLLSYVGVDGDTVESLSSRFGASMDAIEAANGMAGPDPITTGKVYYIPLNSGEQMFSDHSLRQFDQSNFPIYTRSWTTISRDVSFLSYSCASTRTKYILRYGDVSEHHSTKFPYGWVIGSMGVALALIAIALLALVLCKLSQYNPQAPNNQGKSPDQSISHKFQLLKSGSFCYGSGRYLCCQFGNVKQSRTDGSDHHMNTPKGVVVDVFDREKPIVFTYQEILASTDSFSDANLLGHGTYGSVYYGVLRDQEVAIKRMTATKTKEFIVEMKVLCKVHHASLVELIGYAASKDELYLIYEYSQKGSLKNHLHDPQSKGYTSLSWIYRVQIALDAARGLEYIHEHTKDHYVHRDIKSSNILLDESFRAKISDFGLAKLVVKSTDAEASVTKVVGTFGYLAPEYLRDGLATTKNDVYAFGVVLFELISGKEAITRTDGLNEGSNSERRSLASVMLSALKNCRNSMYMGSLKACIDPNLMDLYPHDCVYKMAMLAKQCVEEDPVLRPDMKQAVITLSQILLSSIEWEATLAGNSQVFSGLVAGR |
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| Function | LysM domain receptor-like kinase 3 [UniProtKB/Swiss-Prot:F4IB81] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0032210 | OsGoSa_01g0032210.01 | Chr01 | 32191818 | 32197502 | - | NAM | ||
| CDS seq | atgccgcctccccgccgccgcccgcccgcgcccgggcttctcatcctcctcatcttcctggcgctcgcctcccccggcgaagtcgccggtgatgacgccgcccccggcaatgtcaccgcctcggcgccgctcccctgctccgacctctcgcgcgtctgcacggcgttcgtcgcgttcccggcggccggcgaggccgcgaacgcctccgtgctggagtccatgttcgacgccgcgccgggggacatcacggccgacgcggccgccagccccgggtacgcgttcgtccgcaagaactgctcctgcctcgcctcccgcacatacctcgccaatacgacctacactgtcccctccgccgccgccggggcgacggcgaacgccacggcggccgacgtggctgccgcggcgtacgcggggctagccgtgccgccgccgggcggaccggctctgcggccgccgcgccccggcgccgtggtggctctccacctgctctgtggctgctcatccggcccctggaactatctcctcagctacgtcggcgtcgacggagacacggtggaatcgctatcaagtcggttcggggccagcatggacgccatcgaggccgccaatggcatggccggccctgatcctataaccacgggaaaggtgtactacatcccactcaactcaggtgaacaaatgtttagcgatcattcactccggcaatttgatcaatcaaacttccctatttacacacgttcctggacaaccatatcccgtgatgtctccttcctctcctactcctgcgccagcacccgcacaaaatacattctcaggtatggagatgtatcagaacatcattccacaaaattcccttatggatgggttattggcagcatgggagttgcacttgctttgattgctattgctctccttgcacttgttctgtgcaagctctcccaatacaatccccaagctccaaataaccagggaaagagcccagaccagtctatatcacacaagtttcaacttcttaagagtggtagtttttgttatggttctggaagatacttatgctgccaatttggaaatgtgaaacaatcaagaacggatggcagtgatcatcatatgaataccccaaaaggtgttgtagtggacgtgtttgataggGagaagcccattgtgtttacctatcaagaaatacttgcatcaaccgattcattttctgatgcaaatcttctgggtcatggtacatacggctctgtttattatggtgttcttcgagaccaggaggtcgctataaagagaatgacagcaactaaaactaaagagtttatagtggagatgaaagttctttgtaaggtccatcatgccagtctggtagagttgattggctatgcagcaagcaaggatgaactatacctgatttacgagtactctcaaaaaggttcactcaagaatcaccttcatgatcctcaaagcaaaggttacacatcattgtcttggatctacagggtccaaattgctcttgatgcggctagaggacttgaatacattcatgagcatacaaaggatcattatgttcacagggacatcaaatcgagtaacatcttgctcgatgaatccttcagagcaaagatttcagattttggtcttgcaaaactggtagtgaagtcaactgatgcagaggcttctgtcacaaaagttgtgggtacatttggttacttggcccctgaatacttgcgcgatggcctggcaactacgaaaaatgatgtttatgcttttggagtagtactttttgagttaatatctggaaaggaggcaattacaaggactgatggattgaacgaaggatcaaactcagaaaggcgttccttggcatcagttatgttgagtgcactaaagaattgtcgtaactcaatgtatatggggagcctgaaagcctgcattgaccctaatctaatggacctgtatccacatgactgtgtatacaagatggccatgctagcgaaacagtgcgtggaggaagatcctgttcttcggccagacatgaagcaggcagtaatcacgctatcgcaaatactgctgtcgtcgatcgagtgggaagcgacgctagctgggaacagccaagtgttcagtggtcttgtggctgggaggtga
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| Protein seq | MPPPRRRPPAPGLLILLIFLALASPGEVAGDDAAPGNVTASAPLPCSDLSRVCTAFVAFPAAGEAANASVLESMFDAAPGDITADAAASPGYAFVRKNCSCLASRTYLANTTYTVPSAAAGATANATAADVAAAAYAGLAVPPPGGPALRPPRPGAVVALHLLCGCSSGPWNYLLSYVGVDGDTVESLSSRFGASMDAIEAANGMAGPDPITTGKVYYIPLNSGEQMFSDHSLRQFDQSNFPIYTRSWTTISRDVSFLSYSCASTRTKYILRYGDVSEHHSTKFPYGWVIGSMGVALALIAIALLALVLCKLSQYNPQAPNNQGKSPDQSISHKFQLLKSGSFCYGSGRYLCCQFGNVKQSRTDGSDHHMNTPKGVVVDVFDREKPIVFTYQEILASTDSFSDANLLGHGTYGSVYYGVLRDQEVAIKRMTATKTKEFIVEMKVLCKVHHASLVELIGYAASKDELYLIYEYSQKGSLKNHLHDPQSKGYTSLSWIYRVQIALDAARGLEYIHEHTKDHYVHRDIKSSNILLDESFRAKISDFGLAKLVVKSTDAEASVTKVVGTFGYLAPEYLRDGLATTKNDVYAFGVVLFELISGKEAITRTDGLNEGSNSERRSLASVMLSALKNCRNSMYMGSLKACIDPNLMDLYPHDCVYKMAMLAKQCVEEDPVLRPDMKQAVITLSQILLSSIEWEATLAGNSQVFSGLVAGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0032210 | OsGoSa_01g0032210.02 | Chr01 | 32191813 | 32192128 | - | IsoSeq | ||
| CDS seq | atgcgctcttcggtgatctccttccctgctccactagaggcgttttcccctgtaaccttctcctgcattttgttggtttcttgcccagttgagcagttttctgcatcttcttttcaaagtatctaccacagtgcaatatatttcttggtgggtgat |
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| Protein seq | MRSSVISFPAPLEAFSPVTFSCILLVSCPVEQFSASSFQSIYHSAIYFLVGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0741200 | RBH | 0.0 | 0.0 | 1.687381 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g53840 | RBH | 0.0 | 0.0 | 0.360273 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0741200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033090 | RBH | 0.0 | 0.000000 | 0.265137 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032590 | RBH | 0.0 | 0.0 | 0.205809 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033030 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032300 | RBH | 0.058837 | 0.024333 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032040 | RBH | 0.0 | 2.112826 | 2.664161 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0514100 | RBH | 2.226625 | 1.88289 | 5.0510905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031740 | RBH | 0.0 | 0.160862 | 0.102706 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0507600 | RBH | 2.0393485 | 0.28925 | 9.26827 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032010 | RBH | 0.0 | 3.714006 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023970 | SBH | 0.0 | 3.469700 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032320 | RBH | 0.000000 | 0.094808 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032130 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032580 | RBH | 0.064492 | 1.187530 | 2.509980 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032220 | RBH | 0.0 | 0.000000 | 0.000000 |
