Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0022710 | OGI:01071440 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:23987337-23990856 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | ctagacctctaaagctctgaatcgcatatcacagcaaaccacaccaacaatgtcagtattcatgtgtgacactcagtataaatcgaagtcaagtgaacactatttattaggttaaagtattcatcaggtagagaaccattagcaacttactcggagaaagggaaatgaactattagaacccaacggttaagggatgataggtacctggtgagaagtgatattcacctcaaatatgaagagtccaggaaaaccatgtacctagtaatcaagtacccaaacctcaaatttgtgtagttaggaaaagcctgttcctggtaccagcagtataaacaagttaccagtagtccccacaagaacatttcccatccttgaaatgatgaaatcggattgaatcccttaaaatgatttgccgaccaacaatctgagaaatgtatctgaaagctgtatggcaatctccgcaaacccgaaggttcttcatgatccgtatggggccacctgaggaggaacgagtcagaacaaaagcaaccgcaagcttttcactgtgatatcttagcagttcttctttgttctcttcttcaagatcatgtaaaacatattctgtcagtggaacataacctgcattccttatcttctgaatcaaaaagttgagcttctcatagatttctttggtgtttggatgtgacctgtcaccagcaatgaaggtatgaactccatcagttaaggttacccaactgcgaccggcctcttttttcactgctgctcccttcattgcagcccgggctttggctgtgtcttcccaccttcctattgctgcatgaaacttagatgcaagaacataatttacaggattttgaggttctaattccaaaagcatccttgaagcttctgtccccagatctatcttagccctgtgttttgattgttgacaagcaactaataccgtcctccatatgagagtatttggtttcattggcattcttttcatgtactcctgtatcttatcaagctccccagctcgaccaagaaggtctataacacaagaataatgctcaatccgaggtaatataccataatcctccatcaattcaaagtagtcaaggcctctttcaactaaaccagcgtgactacaggcagacaaaacactcacaaacgtgacatggtctggactttctccgctctcttgcatttcctcaaatatctccaaagctttccttccgagaccatgtctcgcataaccagaaatcatggagttccatgagaactcatttttctgactcatggaatgaaatacctttgaagcatagtctatccttccacacttggagtacatatcaacaagagcactctcgaccacaacatctgattccaagtgtgaccttaaaccaaaagcatgcatctccattccacgctccaatgctgccacagaagcacatgcattcagtacaatggagaaggtgcagtgatccatcatttgttcactaagcatcataagccaaacacagtccatagcttcctgcagatgtccattgtagatgtaccctgaaatcattgaattccatgagatagcatcccgtctgccagacattctagaaaacagccgctcacaggaatccacatctcctgactttgcatagcatgacatgagtgcattatctactgcattatcttctgtaactccatgcttcagcatgacagaatgaatctgctttccaagttcaagaacagataatggagtcaaagcagctagaaagttaacaaacgtcactttgtttgggaccaaaccactcttcatcatattggagaaaacttgtacagattcagtaataggtgcttgtgaactcgccataacacccatgatagaattccaagaaactacatcatgtgcagacatagagttgaaaatttcccagcattctgacatccgcccacattctccatacattttaacaagagcatttgaaatagaggtatctaaatatagtccccattttacagcatcacagtgcaattgttggcctgcagctaaaagtcccaaaccagcacaggaacttaagccactaattgctgcaaagtttgatggacctatactattttgtctcattaaacagtaattcatcattgctgcttcacagtatccattttgatcaagagcagtgataatggtattccatgaaatccgatcccttgcttccatcagctgaaaaactctacatgctttaccaatggcaccacacttggcatacatattaactagaccattactaactgcaattttcctataaatatgtccagctctgagcacatgtgcgtggacttccctacctttcctcaacccttgttctgctgtagaaaactcagctattgcactaagcaacacaacatatgtatccacgttgacagcagcagaatcccttgctcccatgaaaatctctgctgccgcttcaccatgttgctgcttgaccaaaCccgctatcagaccattcaaagtaactgcatttctctctttcagaccgagataaatgtcctttgcttcatcaagcatgccatgtctcgcaaatgcacttactagagcactgcccacatacaggtcacttgagcagccagatttgagcaccctcacaaacaattgatcaagcaggcccaagctgcatgaggaaagatatgtcgcggtgattaagctcccaaaagtatgctctgtcggcctcaactcgatccccgaatcatcatactgcatagccctgaacagagtaaacgtacaaattgcatcccctttctttgcatacacagacatcaaggcgttccatgtgatcaagtctctgactggagtggtatcaaacacacgctgtgccaggatcggcggaccaacggagcaactgccatacatagagatcagggcattgcacaccgtggtgtttgaagtgaactctgtcttagagaccaacccatggacctgcacggcgaagcccagccggtccggcccggaatcctggcacgcccggagcacgctgccaaaggtgaACGacgtaggcctgcaccccggcccctcccgcagcatggcgcggaacagcgggaaggcatcctcggggagcccggacagcacgtgcccggagatgaggcaggtccaagaaacggcgttccggctcggcattccgtcgaacaccccgcgcgccgcgtccagGCgcgcgcccttggcgtacgagttgacgaggtggttggcgaggaagaggtcatgggtgaggcccctcttgacgatctcgaggtggaggctctccggcgaggcgtcgcagccggggcgtcggccgcggaggaggacgtctgcgtgaggatgcggccgcgagagaggaggccggtccggcgtgggcgtgggcgggaggcggtgggcgaggaggtcacggagcggaaccggaggagggagacggcgaggtggcggcggtggaggagaggccgcggcggcggcggaggaggaggaggaggagcggcggagtgtgaggggaggtaatggcgggagcttgcggtgcat
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| CDS seq | atgcaccgcaagctcccgccattacctcccctcacactccgccgctcctcctcctcctcctccgccgccgccgcggcctctcctccaccgccgccacctcgccgtctccctcctccggttccgctccgtgacctcctcgcccaccgcctcccgcccacgcccacgccggaccggcctcctctctcgcggccgcatcctcacgcagacgtcctcctccgcggccgacgccccggctgcgacgcctcgccggagagcctccacctcgagatcgtcaagaggggcctcacccatgacctcttcctcgccaaccacctcgtcaactcgtacgccaagggcgcgcGCctggacgcggcgcgcggggtgttcgacggaatgccgagccggaacgccgtttcttggacctgcctcatctccgggcacgtgctgtccgggctccccgaggatgccttcccgctgttccgcgccatgctgcgggaggggccggggtgcaggcctacgtCGTtcacctttggcagcgtgctccgggcgtgccaggattccgggccggaccggctgggcttcgccgtgcaggtccatgggttggtctctaagacagagttcacttcaaacaccacggtgtgcaatgccctgatctctatgtatggcagttgctccgttggtccgccgatcctggcacagcgtgtgtttgataccactccagtcagagacttgatcacatggaacgccttgatgtctgtgtatgcaaagaaaggggatgcaatttgtacgtttactctgttcagggctatgcagtatgatgattcggggatcgagttgaggccgacagagcatacttttgggagcttaatcaccgcgacatatctttcctcatgcagcttgggcctgcttgatcaattgtttgtgagggtgctcaaatctggctgctcaagtgacctgtatgtgggcagtgctctagtaagtgcatttgcgagacatggcatgcttgatgaagcaaaggacatttatctcggtctgaaagagagaaatgcagttactttgaatggtctgatagcggGtttggtcaagcagcaacatggtgaagcggcagcagagattttcatgggagcaagggattctgctgctgtcaacgtggatacatatgttgtgttgcttagtgcaatagctgagttttctacagcagaacaagggttgaggaaaggtagggaagtccacgcacatgtgctcagagctggacatatttataggaaaattgcagttagtaatggtctagttaatatgtatgccaagtgtggtgccattggtaaagcatgtagagtttttcagctgatggaagcaagggatcggatttcatggaataccattatcactgctcttgatcaaaatggatactgtgaagcagcaatgatgaattactgtttaatgagacaaaatagtataggtccatcaaactttgcagcaattagtggcttaagttcctgtgctggtttgggacttttagctgcaggccaacaattgcactgtgatgctgtaaaatggggactatatttagatacctctatttcaaatgctcttgttaaaatgtatggagaatgtgggcggatgtcagaatgctgggaaattttcaactctatgtctgcacatgatgtagtttcttggaattctatcatgggtgttatggcgagttcacaagcacctattactgaatctgtacaagttttctccaatatgatgaagagtggtttggtcccaaacaaagtgacgtttgttaactttctagctgctttgactccattatctgttcttgaacttggaaagcagattcattctgtcatgctgaagcatggagttacagaagataatgcagtagataatgcactcatgtcatgctatgcaaagtcaggagatgtggattcctgtgagcggctgttttctagaatgtctggcagacgggatgctatctcatggaattcaatgatttcagggtacatctacaatggacatctgcaggaagctatggactgtgtttggcttatgatgcttagtgaacaaatgatggatcactgcaccttctccattgtactgaatgcatgtgcttctgtggcagcattggagcgtggaatggagatgcatgcttttggtttaaggtcacacttggaatcagatgttgtggtcgagagtgctcttgttgatatgtactccaagtgtggaaggatagactatgcttcaaaggtatttcattccatgagtcagaaaaatgagttctcatggaactccatgatttctggttatgcgagacatggtctcggaaggaaagctttggagatatttgaggaaatgcaagagagcggagaaagtccagaccatgtcacgtttgtgagtgttttgtctgcctgtagtcacgctggtttagttgaaagaggccttgactactttgaattgatggaggattatggtatattacctcggattgagcattattcttgtgttatagaccttcttggtcgagctggggagcttgataagatacaggagtacatgaaaagaatgccaatgaaaccaaatactctcatatggaggacggtattagttgcttgtcaacaatcaaaacacagggctaagatagatctggggacagaagcttcaaggatgcttttggaattagaacctcaaaatcctgtaaattatgttcttgcatctaagtttcatgcagcaataggaagagctttagaggtctag
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| Protein seq | MHRKLPPLPPLTLRRSSSSSSAAAAASPPPPPPRRLPPPVPLRDLLAHRLPPTPTPDRPPLSRPHPHADVLLRGRRPGCDASPESLHLEIVKRGLTHDLFLANHLVNSYAKGARLDAARGVFDGMPSRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKKGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIGKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSISNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVWLMMLSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLASKFHAAIGRALEV |
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| Function | Putative pentatricopeptide repeat-containing protein At5g09950 [UniProtKB/Swiss-Prot:Q9FIB2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0022710 | OsGoSa_01g0022710.01 | Chr01 | 23987337 | 23990856 | - | NAM | ||
| CDS seq | atgcaccgcaagctcccgccattacctcccctcacactccgccgctcctcctcctcctcctccgccgccgccgcggcctctcctccaccgccgccacctcgccgtctccctcctccggttccgctccgtgacctcctcgcccaccgcctcccgcccacgcccacgccggaccggcctcctctctcgcggccgcatcctcacgcagacgtcctcctccgcggccgacgccccggctgcgacgcctcgccggagagcctccacctcgagatcgtcaagaggggcctcacccatgacctcttcctcgccaaccacctcgtcaactcgtacgccaagggcgcgcGCctggacgcggcgcgcggggtgttcgacggaatgccgagccggaacgccgtttcttggacctgcctcatctccgggcacgtgctgtccgggctccccgaggatgccttcccgctgttccgcgccatgctgcgggaggggccggggtgcaggcctacgtCGTtcacctttggcagcgtgctccgggcgtgccaggattccgggccggaccggctgggcttcgccgtgcaggtccatgggttggtctctaagacagagttcacttcaaacaccacggtgtgcaatgccctgatctctatgtatggcagttgctccgttggtccgccgatcctggcacagcgtgtgtttgataccactccagtcagagacttgatcacatggaacgccttgatgtctgtgtatgcaaagaaaggggatgcaatttgtacgtttactctgttcagggctatgcagtatgatgattcggggatcgagttgaggccgacagagcatacttttgggagcttaatcaccgcgacatatctttcctcatgcagcttgggcctgcttgatcaattgtttgtgagggtgctcaaatctggctgctcaagtgacctgtatgtgggcagtgctctagtaagtgcatttgcgagacatggcatgcttgatgaagcaaaggacatttatctcggtctgaaagagagaaatgcagttactttgaatggtctgatagcggGtttggtcaagcagcaacatggtgaagcggcagcagagattttcatgggagcaagggattctgctgctgtcaacgtggatacatatgttgtgttgcttagtgcaatagctgagttttctacagcagaacaagggttgaggaaaggtagggaagtccacgcacatgtgctcagagctggacatatttataggaaaattgcagttagtaatggtctagttaatatgtatgccaagtgtggtgccattggtaaagcatgtagagtttttcagctgatggaagcaagggatcggatttcatggaataccattatcactgctcttgatcaaaatggatactgtgaagcagcaatgatgaattactgtttaatgagacaaaatagtataggtccatcaaactttgcagcaattagtggcttaagttcctgtgctggtttgggacttttagctgcaggccaacaattgcactgtgatgctgtaaaatggggactatatttagatacctctatttcaaatgctcttgttaaaatgtatggagaatgtgggcggatgtcagaatgctgggaaattttcaactctatgtctgcacatgatgtagtttcttggaattctatcatgggtgttatggcgagttcacaagcacctattactgaatctgtacaagttttctccaatatgatgaagagtggtttggtcccaaacaaagtgacgtttgttaactttctagctgctttgactccattatctgttcttgaacttggaaagcagattcattctgtcatgctgaagcatggagttacagaagataatgcagtagataatgcactcatgtcatgctatgcaaagtcaggagatgtggattcctgtgagcggctgttttctagaatgtctggcagacgggatgctatctcatggaattcaatgatttcagggtacatctacaatggacatctgcaggaagctatggactgtgtttggcttatgatgcttagtgaacaaatgatggatcactgcaccttctccattgtactgaatgcatgtgcttctgtggcagcattggagcgtggaatggagatgcatgcttttggtttaaggtcacacttggaatcagatgttgtggtcgagagtgctcttgttgatatgtactccaagtgtggaaggatagactatgcttcaaaggtatttcattccatgagtcagaaaaatgagttctcatggaactccatgatttctggttatgcgagacatggtctcggaaggaaagctttggagatatttgaggaaatgcaagagagcggagaaagtccagaccatgtcacgtttgtgagtgttttgtctgcctgtagtcacgctggtttagttgaaagaggccttgactactttgaattgatggaggattatggtatattacctcggattgagcattattcttgtgttatagaccttcttggtcgagctggggagcttgataagatacaggagtacatgaaaagaatgccaatgaaaccaaatactctcatatggaggacggtattagttgcttgtcaacaatcaaaacacagggctaagatagatctggggacagaagcttcaaggatgcttttggaattagaacctcaaaatcctgtaaattatgttcttgcatctaagtttcatgcagcaataggaagagctttagaggtctag
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| Protein seq | MHRKLPPLPPLTLRRSSSSSSAAAAASPPPPPPRRLPPPVPLRDLLAHRLPPTPTPDRPPLSRPHPHADVLLRGRRPGCDASPESLHLEIVKRGLTHDLFLANHLVNSYAKGARLDAARGVFDGMPSRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKKGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIGKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSISNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVWLMMLSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLASKFHAAIGRALEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0589900 | RBH | 0.872093 | 0.722683 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40720 | RBH | 0.577727 | 0.492914 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0589900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023550 | RBH | 0.0 | 0.943593 | 0.455344 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023120 | RBH | 0.0 | 1.147287 | 0.114722 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023450 | RBH | 0.191323 | 0.0 | 0.784586 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022860 | RBH | 0.000000 | 0.021536 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022550 | RBH | 1.524990 | 3.908299 | 0.616416 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0384000 | RBH | 2.04928 | 1.7185095 | 1.0415875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022490 | RBH | 0.105741 | 0.058560 | 0.089992 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0373200 | RBH | 2.025719 | 1.8292855 | 3.3753005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022430 | RBH | 0.0 | 2.204708 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022730 | RBH | 0.067296 | 0.260898 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022540 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022870 | RBH | 0.171534 | 0.649453 | 0.163013 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022540 | RBH | 0.158528 | 0.0 | 0.429855 |
