Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0016750 | OGI:01047480 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:15612142-15619424 | ||||||||
| Gene Symbol | Orysa;CKL5 | ||||||||||
| DNA seq | atgtcatgcagcctgtacctggtgttcgagtatatggagcatgaccttgctggcctggcagcgagcccggacgtcaagtttactctgccgcaggtgtttaaggatcccgtgctatctcgttttataggcgaatacttgctgggaatatgttaaatttgatgatgatgtacttctcgcagataaaatgctatgtgcagcagctattgtcagggcttgagcattgccacaataataatgtattgcatcgggatatcaagggatcaaacttattgttggataacaatGggattcttaagatcgccgactttggcctggcaacattctttgacccacgacataaacgaccaatgacgagccgcgtggtcacgttgtggtaccggccacctgaattgttgttgggggcgacagactatggtgttggtgtggatttgtggagtgccgggtgcattctggcagagctcttgcatgggaagcccatcatgcctgggcgtactgaggtgagtcataggacaatttctgactcttcattatatgctattcctttggtaatcctggggaccatacttgttctatcaatccaatatcgaaatctcatttggtaccaaaagtcaacttgtactatttatataaaaaaaactccatggtggctgttgtgtattgaaaatgttgactttttatactaggtttgctccaatggattgtagtatctctaggttgattaatcttctacgtttgttctttttttaatgttttggtgatagtgattgatggccaggccgttgtcatttattgaaggggttgaatgatatgctgacttcgttgtatatgtcatgactattatttttgtatagggtactgccatcagtgtttaactggttatccacatggcttcagttgaagcttccttgaaaagcatacatgtcttttggaattaaaatatgttgtgccattattcctgttatttaaaattcgtcagtatagtactctcaactgtcgttaatacatgttgttttggtcttttggacctcaatgcagacctccaaacacttatctgccacttaatttttgttgcaattaatttattaaacacgaaaaaaaatcctttattatggaagtagttttctaggcaaatctgcacgtatgatttttcatgtattcaatgtacacatatgttggaagtttggctgcatggatatccaaaacagcatatgtttgtgaactgaggtagtagatgttctaagttagtcacataagtatcactttctccatttccaatttttttcttgaaaacacaagagaacttcatttcgttaagaagagagaaatatttaggagtacaaaggaagggtcaaggaacacctcccaccaagaacacgtcccaacaagcctcgcacataagtgaggcccaaccaacaaacccactgagactaactcactgccggggtaagcaacttacaaagaaactgatggagctcatgggctcccactaaacaccaaccctaattagccacagcttgcaacaccaccaccacattaggattagttccattggaaacacaattgtttcagtgtttctgaatctcccaagttactaaataatcaaagaattcaatcccttccgtggctctttgggaacacccttaacaactttgctccaccaacctgaaaaacgtgttgtagaggactgaggtgcagctgaaaccaaacccaatttcatgaaggttaaagtccatacttgtcgggagtaaacacaagacaaatataagctgccacttcttttttgacggaaaacagcaggagaggctcctactgcgatatattaatgtataaatatatagtttacaatagttacaaataaatacaggagaaaattaaagaaagttgtcaatccatgattgccatagaggtttgtcagtttcctttgctctgtgcatttgcagggcaaactcctgttggaaatcagataagctgccactttgactagtatctctgttttattggtggttacattatgtataacagtttacatcttataaaatcatactgctatgtaagtaataagtggtcgatgtaccaatttatatataattggtggatggTtttccttttctcgagagcatttcaggcatcgccatatattagtaaatttggaattctgcaaatgtaaaacataatcatcttgttctggttctgtgaaaagagaagtcctgtatttcagatcgacgatgccactggcaatatagagtgattagctgaaccttatttagcagtgattcataagctgattggttctgcttatagctcataaaatgcAaaagccaatttataaggcctttcaaaactttcaaacatataggctatatataacttgtcctgccatgatattttcactggaaggtacacataggcttattaaatatgtccagaaaatgaaatgatcgctaagctaaatatttaggcatggtctatgattaaaactcctatagtaccacaaaccactcaatctgagcaaaactctgtgctgtttgccagcaatatatgctattaatgggatagtcaaacctgaatttaatcatttgaagtttctttaagataacatgaatatggacctgcttgatgaggattatttggaattcgtacaattgttaacttacttatatatctttttgatcgtgacacaacgagtaggattttgtttcatcaggtgatcaaaccaccataaatattcagttcttctaatctatctggttgaatccatgcatctagggtgaactcgtgatgtttattaatttattgtttttatcttgtgttgctatatatgctttagttgcttacataaaattgattgccattttctaattttaatatgtgcaatatgaactgatcaggtagaacagttgcacaagattttcaagctatgtggctccccctcagaggagtattggaaaaagtccaagctgccacatgctacaatattcaaacctcagcagccctataagcgttgtatcagagaagcatttaaagattttcctccatcttccttgccgttggttgaaactctgcttgcaattgatccagctgagcgccaaactgctacatctgccttgcaaagtgaagtatgtccatatcttttcctccttagcattgtaacagagaaTgttagtgtgaagtaacataattgacctgtgatttatgtggtcctttgatacatatcacctctatgtggaatcacttctatactcttgagaacagaagAaaaaaaaatcctgcagtatgagcaaaagtgttcaagaatctttttaaacaacaatccatctttgttattgtttcagtctttcggaagcttttatagatactaaactgctggtttgacaatgtggcatctttagattaatctagttccttttctcctaataatctgagcgtagatatcctacatgagtagtgctatgacataaaatgcaaggagcaacaccaataaaatgacgttttgcacactcaaataccaagaaatggctggtattcagatgtgtaatgtactgtaactataaatggaaaagatctgttatgtttttaaatctttagatttggtttgtaccaaggacctcatctttatgaaggtctaaatggctactttgatttccagtataggttccaaaaggttttctgttttagaattgtcgatttaatatctgcatttcatgcacatgtgatatctggagatctatgcccacttattagcaccattgcaattttctagaccacatgatttaatgggttacattatgttttctgcttcaatatttagtgctgcgcttggtacgactctccctaatgttcagtacgtaggaaatctcttatttatttaattaataaTatagctccacccttggtatacagtcctaaTttttttattttgacgagctattaggctatcactatgtagtaaggttttatgctgtgagtattgcagttctttgcaactgagccttatgcatgtgatccatcaagcttgccgacatatccaccaagtaaggagatggatgctaagatgagagatgaggaagctagaaggtttgttgggcttacacataattatataaatcatgttatgatccttttacatttgttttgcattgattatcaacttgggccatttagactaagtaatgaatggttcactgtgcatttgaactccactttagtttttgcatctctttctctataaactaaggccgtgttcgggagtgagggttgggaaccctcactccccggcacgcaaaacggagcagcgtttaacgcgtgattaattaagtattagctttttttttcaaaaatggatcaatatgattttttaagcaactttcgtatagaaactttttgcaaaaaacataccaTttagtagtttgaaaagcgtgcacgcggaaaatgagggagaggggttgggaacttcctataccgaacgcagcctaagtaatgatgaatcgttctgtagttcttttattgaaaaaaaggaggagtgtttaagtcagagtgttttaaaggcaaacTAAtactatattgatattctctactgccattctttatttgggactaggggtgggcagaattagaccgaaccgaagaaccgaaccgaaaagaccgagaccgaaaaaaccgagaccgaaaaattcggtcagcaattcggtctcaaccattaaaagaccgaaatttgttcggttaattcggtcatgggcctcaattaaccgaattgaccgaaataaccgaataaggcccaatagatctagttggcccaataagcccactaataaaaaaccctacaggcaaacaccacaccgtgcgccgtttcttccccatcagagcactgcgccgtcccgtctccatcctcttcgctccttcgctccttcaccgtgcgccgcctcccgcctccgcctctgcctccatggccgggcgccgcctccagtcggcgcgcctccgcctccgtcgccgggcctccgactccagccggcccacctcgccctccatggccgggcgccgcttccagccagcgcgcctccgcctccatggcgagcgccgcctccagcaggcccgcctccgcctccatcgccgggtgccgcctccagccggccgcctccacttccatcgccgggcgccgcctccatcgccgggtgtcgcctccagccttgcttctttgctgtgatatgctgtgattttgctcgatttgctgtgacaatctgcggcctaattgttgattatttgatttgcttttgttgttcaaatttttctcttacggttagttcggtctataaccgagaccgaaccgaactaaccgaagaccgattcgctcggtcttgggttttgttggagaccgatcggtcttgagattacaaagaccgaattttcaaaaaaaccaagaaaccgaaccgaatttttcggttagaccgaatgcccacccctatttgggactacgttcagggacagtaatcttcttttgctaagaatgctagctagaaagtttggaattctttcgctacatccattggcatgtgtccaactgtccatccattctacctcacgggcacatgcaatatgtagctgattttctttcacttttctaaggcccactttggatgggccaaagcccaacccatccaaatgagcctgaactgtctttcactaatctgtctaattgtttgtagtgcatcatacatgatgtcatatgcctttgctgtatattcttattccaggctacgagcagctgcaaaggccaaaggagagggggtaaaaaggactcgaacgcgggatcgatctcaaagggcaggaccagctccagaggctaatgcagagcttcaagcaaacctagatgtaagccagctatttatatttgaagatttcctgtttaatttgctgccttgtccactgtagatttgttacacatacaccaactgggttggctacgagtgatatttagtactaacgatatatcccaaaccatttgtatttctctgggaagaaatataagtccaattaaaacaatcattatttttctgatggtaatgtgtgctaacatggtatcatgtgataaacctaataatgtcagttggttttctgcaaaaacaacaatacccactggtcagattttggattttggagttcagctggttcaacgtgctaagctcccaaacccctattattaaattcaatttatcagcctttaaaaattgcatctaatttatactgctttaaatttgaaaattatataaaaagaactagaaaacctggttgactcttttttggaaaccttgttcccctccgatttttgggccagaattgtagcacctctgacatcaacagaatcagtcgcgctccataatcctcatttattacaaggtctttcaatttcaagcatgtttacaaaagtcctttgtatacaaaattcttacacaatactatttctgtaggtgtggaaataaaagtagacttcactgtagaactattaatttgcgtccatggaattggtagggattgcagaagataatgcagtagaagtaaactagcgttgttctgtgttctctctgatctcacttcactatctttaaccattcaagacaaacatgtacgttgaacttttcaaattttcattaacaacagaggcgacgcatgataacgcatgccaatgccaagagcaaaagtgagaagttccccccacctcatcaggatggagctatgggtaacccattgggatccagtcgtcatatggaacctatgtatgagcaccaggatgcttccttcagcacagtagtccccatccagaaggggtcctcacaaacatggtctggaccattggttgatccagcagctctagggcaatcgaggcggaagaagcaaactgccctagatgcgaaggctgcagcttattcaaagcagctccagaaggacaagggcggaacaagagcacgataagaggaactcaatacagtttcttttacatgtttttcatcgagtttaaggggaagtttttagaatggtcagtctgtagatgaattatttccttctgttttgttcctttcgtgcggaaagaaagcggtagtgcttcagtaggaagaaattcatccagcttatgtatatgtggtagtgttttctgttcatctcaggtgcttctgaacaaattggtgtccggaaccaaaggtatttaagctcaacgtgacaattcggttgcccttgtgTAtatatggagtattctttcttctgtaaataaacggatggttcatgcatctcattgg
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| CDS seq | atgtcatgcagcctgtacctggtgttcgagtatatggagcatgaccttgctggcctggcagcgagcccggacgtcaagtttactctgccgcagataaaatgctatgtgcagcagctattgtcagggcttgagcattgccacaataataatgtattgcatcgggatatcaagggatcaaacttattgttggataacaatGggattcttaagatcgccgactttggcctggcaacattctttgacccacgacataaacgaccaatgacgagccgcgtggtcacgttgtggtaccggccacctgaattgttgttgggggcgacagactatggtgttggtgtggatttgtggagtgccgggtgcattctggcagagctcttgcatgggaagcccatcatgcctgggcgtactgaggtagaacagttgcacaagattttcaagctatgtggctccccctcagaggagtattggaaaaagtccaagctgccacatgctacaatattcaaacctcagcagccctataagcgttgtatcagagaagcatttaaagattttcctccatcttccttgccgttggttgaaactctgcttgcaattgatccagctgagcgccaaactgctacatctgccttgcaaagtgaagtatgtccatatcttttcctccttagcattgtaacagagaaTgttagtgtgaaatttggtttgtaccaaggacctcatctttatgaaggtctaaatggctactttgatttccagtataggttccaaaagttctttgcaactgagccttatgcatgtgatccatcaagcttgccgacatatccaccaagtaaggagatggatgctaagatgagagatgaggaagctagaaggctacgagcagctgcaaaggccaaaggagagggggtaaaaaggactcgaacgcgggatcgatctcaaagggcaggaccagctccagaggctaatgcagagcttcaagcaaacctagataggcgacgcatgataacgcatgccaatgccaagagcaaaagtgagaagttccccccacctcatcaggatggagctatgggtaacccattgggatccagtcgtcatatggaacctatgtatgagcaccaggatgcttccttcagcacagtagtccccatccagaaggggtcctcacaaacatggtctggaccattggttgatccagcagctctagggcaatcgaggcggaagaagcaaactgccctagatgcgaaggctgcagcttattcaaagcagctccagaaggacaagggcggaacaagagcacgataa
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| Protein seq | MSCSLYLVFEYMEHDLAGLAASPDVKFTLPQIKCYVQQLLSGLEHCHNNNVLHRDIKGSNLLLDNNGILKIADFGLATFFDPRHKRPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLHGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRCIREAFKDFPPSSLPLVETLLAIDPAERQTATSALQSEVCPYLFLLSIVTENVSVKFGLYQGPHLYEGLNGYFDFQYRFQKFFATEPYACDPSSLPTYPPSKEMDAKMRDEEARRLRAAAKAKGEGVKRTRTRDRSQRAGPAPEANAELQANLDRRRMITHANAKSKSEKFPPPHQDGAMGNPLGSSRHMEPMYEHQDASFSTVVPIQKGSSQTWSGPLVDPAALGQSRRKKQTALDAKAAAYSKQLQKDKGGTRAR |
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| Function | Probable serine/threonine-protein kinase At1g54610 [UniProtKB/Swiss-Prot:Q9ZVM9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0016750 | OsGoSa_01g0016750.01 | Chr01 | 15612142 | 15619104 | + | NAM | ||
| CDS seq | atgtcatgcagcctgtacctggtgttcgagtatatggagcatgaccttgctggcctggcagcgagcccggacgtcaagtttactctgccgcagataaaatgctatgtgcagcagctattgtcagggcttgagcattgccacaataataatgtattgcatcgggatatcaagggatcaaacttattgttggataacaatGggattcttaagatcgccgactttggcctggcaacattctttgacccacgacataaacgaccaatgacgagccgcgtggtcacgttgtggtaccggccacctgaattgttgttgggggcgacagactatggtgttggtgtggatttgtggagtgccgggtgcattctggcagagctcttgcatgggaagcccatcatgcctgggcgtactgaggtagaacagttgcacaagattttcaagctatgtggctccccctcagaggagtattggaaaaagtccaagctgccacatgctacaatattcaaacctcagcagccctataagcgttgtatcagagaagcatttaaagattttcctccatcttccttgccgttggttgaaactctgcttgcaattgatccagctgagcgccaaactgctacatctgccttgcaaagtgaagtatgtccatatcttttcctccttagcattgtaacagagaaTgttagtgtgaaatttggtttgtaccaaggacctcatctttatgaaggtctaaatggctactttgatttccagtataggttccaaaagttctttgcaactgagccttatgcatgtgatccatcaagcttgccgacatatccaccaagtaaggagatggatgctaagatgagagatgaggaagctagaaggctacgagcagctgcaaaggccaaaggagagggggtaaaaaggactcgaacgcgggatcgatctcaaagggcaggaccagctccagaggctaatgcagagcttcaagcaaacctagataggcgacgcatgataacgcatgccaatgccaagagcaaaagtgagaagttccccccacctcatcaggatggagctatgggtaacccattgggatccagtcgtcatatggaacctatgtatgagcaccaggatgcttccttcagcacagtagtccccatccagaaggggtcctcacaaacatggtctggaccattggttgatccagcagctctagggcaatcgaggcggaagaagcaaactgccctagatgcgaaggctgcagcttattcaaagcagctccagaaggacaagggcggaacaagagcacgataa
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| Protein seq | MSCSLYLVFEYMEHDLAGLAASPDVKFTLPQIKCYVQQLLSGLEHCHNNNVLHRDIKGSNLLLDNNGILKIADFGLATFFDPRHKRPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLHGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRCIREAFKDFPPSSLPLVETLLAIDPAERQTATSALQSEVCPYLFLLSIVTENVSVKFGLYQGPHLYEGLNGYFDFQYRFQKFFATEPYACDPSSLPTYPPSKEMDAKMRDEEARRLRAAAKAKGEGVKRTRTRDRSQRAGPAPEANAELQANLDRRRMITHANAKSKSEKFPPPHQDGAMGNPLGSSRHMEPMYEHQDASFSTVVPIQKGSSQTWSGPLVDPAALGQSRRKKQTALDAKAAAYSKQLQKDKGGTRAR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0016750 | OsGoSa_01g0016750.02 | Chr01 | 15618895 | 15619424 | + | IsoSeq | ||
| CDS seq | atgcgaaggctgcagcttattcaaagcagctccagaaggacaagggcggaacaagagcacgataagaggaactcaatacagtttcttttacatgtttttcatcga |
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| Protein seq | MRRLQLIQSSSRRTRAEQEHDKRNSIQFLLHVFHR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 15.427485 | 81.837517 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0367700 | RBH | 2.280136 | 2.879464 | 8.608825 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g27020 | RBH | 1.581931 | 1.831162 | 2.183695 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0367700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017150 | RBH | 1.316491 | 19.077698 | 8.440804 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016830 | RBH | 0.277868 | 2.801369 | 3.616180 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017090 | RBH | 2.477317 | 14.243322 | 11.193931 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016470 | RBH | 0.504361 | 0.682779 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016520 | RBH | 6.817002 | 6.364137 | 26.155319 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0255700 | RBH | 16.063354 | 27.7561945 | 61.5133725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016690 | RBH | 0.575191 | 1.243833 | 1.372703 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0253300 | RBH | 22.0860835 | 40.632721 | 34.358299 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016570 | RBH | 0.340060 | 0.316306 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016500 | RBH | 1.128427 | 2.310664 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026770 | SBH | 7.076990 | 29.812801 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016520 | RBH | 1.679806 | 2.111031 | 2.661424 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016400 | RBH | 0.625574 | 8.731000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016820 | RBH | 0.735308 | 3.115159 | 4.797252 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016590 | RBH | 2.622667 | 28.466167 | 4.243095 |
