Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0012940 | OGI:01032320 | 8/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:10868514-10873533 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaattcttagtttgatcaactttctgcaaataaataagatgactggttgatgtccaacaactctgtttctgaaattatgctgaaatgtaggttttatgatgttgtggccgttgatactgttttatggcaagattgcctttattcatttatgacttaactcattttcttttcgattaattctttaaatgatggctttgtttttgtcagttgactcgatctggggttggaaatggaatcgcagcatttgttttggaacctctaaacagtctgtcaagacttgaggatattctttgtaagcatatcactcaaaacctttcctttcattgaactatctaaacatgtttgcatcatgtcatgctttagacaggtgaaccaaatatttgtttgtgctatctgattctcatgaggacactgaacaactaacagtgcagaatatttgtttacaatgacctataaaaatttgctacatttctctgtaggagattactagatatgcaaaccatatccagctgtgtttttttgaacaaataaaatcattatatgtgtttttgttgccatagcagatattgctggttaaccaaatgttgagactttgacagaatggacctctttttcaagatagggacttcattaaccataattacatgcaagaacttttcaggaaagttcaaccattgctgatattggcgcacacaaacagcaccagtatgtgcaactgacatgaaaataaactgcaatctgataagtgataatgaacagtctctacaagtaacaaacaaaaaaactggagttataatatctgttcttgtaatattttatcctagaagagcctatcccaaccacagttttatcttcccaagtcccaactcacaacatgtttttgagcatggaagtggaacacttcttggccaacaagttattcatcacaaagcatgtctttatccttttcaaagggagacatccatgttttgcagaaaacttactagaggaaacccatccaaagagcacaaactgtgccttttccagcaggatcagtgagatttgagaatgatctgttgctgacacttagtataatatgataaacattagggacaattttgtttttagcccctattttgatatacaattgtgattttgcccctactttttagggttttcgTttttacccttgtttttctgaaatgaaacaggcgtttacccctagttctcatggaagttagtggagctgtaattgttgtagtaaggaaattgaaaataaaataaataatgattttgcaaattgaagatttacctttgtacccctggccgtctcgctggcccgagcagtacccaaaaccctatcactaatccccacccccggtggcggcggtgtcccggccaggagcagccagccacgggcaggaggccacggtggggctgctggccccgtcggcggtgtctgggctgggagcaggcggtggcgcacaggaagccattgtggcgagcgggaggccacggcggcgtggcagggagcaggaggccagcagctgcacgcaggggctgtggcacgcgggaagcaggcaagcaagcatatttgtatcagctgctcataggttctttagcaggatgcacaaaaaattgctagcaggtgaatagaagtgttagagtatgcaaatctccaaatcaatactcaactgcgtaagatcttttgatctagtttcggatctttctgatgtgacaacatcacaacagaaacaggtgaaactgaagttaaattaagatgatctttcattaatctgatgcagtttgatttgaacatgctgatgcttttttgctgtagcatcacattttcttatgatcttaataatgtcatataactgcaatatttgtcgtatgccctatggatcacacgtagtaagttacacaggataagggcacaaatgagggtggaaatacaattattgaacaaaagtagaagcaaatgtgcaacaacatgtaaggatacaaaagtcttttcgccaataacttaacaccgttaactttatcatccacaataggggcataataagggcaaaatgttacttcgtttcaaaaaagcaagggcaaaaacgaaaaccctaaaaagtgagggcaaaatcacaattggatgttgaaataggggtaagaatgaaattgccccgttttatgtttgtttagctacccaataaatgttcagttagtttactttggaatattgatgttgttatggtctaatccttcacatggaaatatcaatggaagcagcagcaacaccaaaaccaggaacagcatgtccgagaacactctaaaatctagatatctgTAtataaaaagtttgtcaaagttaccacatgcatgctacaacaatttatatttcaaatagataatatatccatcacattagcccattactattcatgtggacatgtggtcactgaatgtcagctttaagtgtattagtttgatgaatgtactaaacagctgtttaaaacgggtggtggtgcgagtttattttgtcaatttttcattgtctgttgTttttttagatttatgatttatgcggtttcagcctaaatgaatcatgaattcacagatcactgatcaaacatacaagtcattcataaagacaagagattcgctttctttatacaatatttctaacaaccacaaatacattcattcaagctaataatgctgattccttttgtacgtactacttctattgaaatctgctgaaggtatgattacccacagcgatttcagttgcatttgttattcatgtttatactcatctgaagtaaataggatgaatattagaatgtgaattcttatcaatcaatttggcgagacatcattctcgggatggagggtcttttatttctaacatgctgtccctgttttccggttaatcttctgacatgcttatctagagaatcggttgcacaatccaaattacaaaccgttcaactcttctcagaagcctgttgctgtcatctgagtgctaactgctgaatccaattgactccaattgctgatgaccatgtccttttcaacttcagtctgaacagccctggcgagtacctgtgaagagcatttcacgagttgaagaaatggaatatgacagatgccatcgaaaggttacctgaggtatttcctacattgctgaaagataaacttcaacatgattgttaggaaatattgtagttttcctaggattaaaatctggttttggaatcgttttcctattgaagacagttattttatctgtagtcagatgtttgaactgaagaataactgctgcattgtacttcctgaaaaaaaaagaagaggggcaccacattgtcagtacacacaacgctgcactatgaatctataattgataacgacagcggctgatgcacttgtataattgtaactgtggaaacccataattcaggtagacttgctcttttgacgcttaattatttgttgaaatttgggtaatctattatattttttgacgttttaaacaataacacggtctccaaaatatatattggactatgattttctaatatgatatatacaataaataaatacaattttatttttgttgttgtaccatgtaagacgaatctacacatattgttttatattgttctagtgtctttactttaaatattttaggagttattcgtagtcaaaattataaaagtttaatcttaattttgttcaaaacgtgaagaattaagaccgctggaaccggaggaaatactaatttagtcctttcgtttctgcccgactgaacttttatgaggcttcatcgtttgctttcTttttccctagaaagagtgatagcatccacaaaccccaatgcgtgtaaacttcatttccctttatttattcagtgatcgaaccttccaatacaaacacaatcaagtcattagaattcgccatcacgtttttcaaaaaggaaaataaccatatatatgcatgcatggtaaactaaaccactaattctaggagattacgccaaacctcatcatggcacatgcttggaagaattctaacgttgctggtctccctaatacgttaagatgtcaagcagtcgaagaggcttatttgtgacattttgttttttcacgtggagctccatctctagaaggccttatttgtggttgtggctatgcctatgcatagctcgaagcctcgaaataaggtctttaggaaccgagttcattcatcaagacgcatgcatccaccactgcactcgcaagtgtactttcctaacgcaatttcaataaacagaccatatggataaaacacaattcTtttttatctttaaaccacaaattcttcaatagaacacacgtggatacattatacgtacccctctaTtttatattataagttgtttttcttttttgctaatcaaattttttttaagtttgatcaaatttatagaaaaatatagtagtattttcaatacaaaagaaacatattgacaaaatatatctaatgttagatttaataaaattaattcgataatttagatgttgctaagtttgatcatattatagaaaaacgtaacaacatctacaacactaaatttgttcccttacatttaacattgaatatatttcgatactatAtttgttttgtattgaaaatatcactgtatttctctataagcttagttaaagttaaagaagtttaactttaaaaaaagttaaattatcttgtaatataaaatcaaggtagtaataaattatacaatggatgttatgacttatgatcattagaaagccgtacaatgaatattgtttaatgatataataaaagaacacacgaggtttcaataagttaattagcaaacaactactagcagtaaaaatccatttcacagccgcagcatcgaagcgggtagcttcatcgatccgtggagaagaactacagtactagctgctaatttactctattgcaaaatttcctgatctccccttggcttcccgtgagtacgtcgaggttgcccatcttgaccat
More
|
||||||||||
| CDS seq | atggtcaagatgggcaacctcgacgtactcacgggaagccaaggggagatcaggaaattttgcaatagacccctgcgtgcagctgctggcctcctgctccctgccacgccgccgtggcctcccgctcgccacaatggcttcctgtgcgccaccgcctgctcccagcccagacaccgccgacggggccagcagccccaccgtggcctcctgcccaaagttgatcaaactaagaattga |
||||||||||
| Protein seq | MVKMGNLDVLTGSQGEIRKFCNRPLRAAAGLLLPATPPWPPARHNGFLCATACSQPRHRRRGQQPHRGLLPKVDQTKN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0012940 | OsGoSa_01g0012940.01 | Chr01 | 10868514 | 10873533 | - | NAM | ||
| CDS seq | atggtcaagatgggcaacctcgacgtactcacgggaagccaaggggagatcaggaaattttgcaatagacccctgcgtgcagctgctggcctcctgctccctgccacgccgccgtggcctcccgctcgccacaatggcttcctgtgcgccaccgcctgctcccagcccagacaccgccgacggggccagcagccccaccgtggcctcctgcccaaagttgatcaaactaagaattga
More
|
|||||||
| Protein seq | MVKMGNLDVLTGSQGEIRKFCNRPLRAAAGLLLPATPPWPPARHNGFLCATACSQPRHRRRGQQPHRGLLPKVDQTKN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 14.532220 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013360 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013380 | SBH | 0.000000 | 0.000000 | 0.243327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012840 | RBH | 0.000000 | 0.055043 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0177200 | SBH | 0.0272225 | 0.1674925 | 0.158645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012890 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0176400 | SBH | 0.024655 | 0.176975 | 0.309878 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012880 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0012980 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013040 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012750 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013050 | SBH | 0.0 | 1.806657 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012810 | SBH | 0.0 | 0.0 | 0.0 |
