Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0002220 | OGI:12004300 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:1499500-1502007 | ||||||||
| Gene Symbol | SDRLP-6, SDRLK-57, CRL4, CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP | ||||||||||
| DNA seq | ttaggtaaaggcatgagcttcatcttcagcagaaatgagcatttgcactatgtacttcatgcttggcctcctgtttctatcttcttccaggcatgaaatggccaattttataactagctgagcctgcaaatgattaaattcaccaccaaattgatcatcaattaagtccataatccatgattcattcttgctgtccagtttgtcaacaaccatcttaaccacgcttctcacatcagtttctactccatctttcccatccactacccattctgtaatcctcctccctttcaccagctcaagaagaacaactccataactatacacatcaaccttctcggtgatgggaaggctagaaacccactcgggagccatatatcctctcgtcccccgaatccgtgacatttcagaaccagacccatctctgttcaacaacttggacaagccaaagtcagtgattttaggctccatatcttcatccaacaatatgttctcgggcttcatgtcacaatggatgatccactctaggcattcattgtgaagatatgccaaccccttggccacacctagagcaatgttgaacctttgcttccatccaagaaacttgctggaatctctcctatcaaatagtactttggccaatgatccattctcaatgtactcatagactaaaatcctatgtgttccttccgagcaaaatccccacattctcacaagattcatatgataaatcctaccaatcacactcaactcggcttggaaaacatcctcactctggctcacatcttgtagcaccttgacggccactaccctctcatcgtctaaactccccttgtatactatacctgatccaccatgaccgatcttgttgttgaactttttagttcccctctccaactccgagtacctatatgcgcgaaaatggctagtaacaatcctgtacccttcttctagtaccgaaacctggcttggcctgaaaactcccttgttggaaaagatccagcaacccatcgcgatcagaaacacctcaatgacaaaaattgcagacaggaatccatagaagtagaaccatattgacttgccctgattattgctcgagctcgacgacatatcggaaacatcgagcaagaactctgatgagcttgagccactacatccagcaatgtcttcctcaatggcaaggccattcgtctgccattggtggacgtgcaactctggcatgtcgagatcagctgggaccttgagataggccgtcccaagatgggcagggtgtgttctgccattgaacatgaggcccttggtgtagcactctcctgtgccctgcttgtactcgaacaccacgcacgacggctcgctcatgcaccgcgccgtgcactcgtgcagcgacaggtgcgcgctgctgttgatgtcgaagccccagaagtcggtgtgcggcagcgccaccagcttcatcgcccgcggccggccgccgccgccgtcggtgtggttgaacgtcggctggcagcctcttgtccagtcgctcgcgtcggcgcgcgcgtaccccggcacgcagacgcacactggcgccggcgagtagaggcacacggcgttggcgccgcacacgccgtggatgacgcacgggttgacgaacgccatccacgacaccgaccatgtcccggccatctcatccaggctgtacagcctgaggttgccgtccgtgtccagcgtcagcctcctcctgacgccggcgccctcgccgaggtcggcggcgtcgaaggtcgcattgtcgctggacaagaaatggccggaggcgtcgaagaaagcttcccgggtgaagttgtagtagatgttgcggttgttctgccagtagctgtagtaggggttaggccagtagatgctgctgggcatcttgtggttgtcgtacaccagcgagagcatggcgtagtcgctgaagcggaggctgtagaagccggcggcgaggagcttgcctgccgagaccatcgcctcgccggcggcgacgatgcgctgggtgggaagcagggtgtcggtggggtgatcgaagctctgccataggatgttcccgctcgcgtcctcgatggcgaggttgccggagtcgtgcagccgcgcgcgagcggcggtggcgttggcgacggttgagttccataccacctcgccgtcgtagtcggtgaggacgagcgcgccgcggcggccgtcgagcgcaacgcgggagcgcgcgccgtggacgggggcgcggccgcggttggctgaccagacgacggtgcggcccgcggcgcgcgcgaaccagacggagaaggtgaagacggtgggcgagacgccgtagaggccggcggcgaaggtgccgtccggggagagcaggacgtcggtggcgtggtcctcgacggcgatggaggcgccccgggggaggctgtcgcggcgcgcctcgcacgggaatggacgcgacgacgagaggaagacgacgacgacgagaagcagcagcacggtggcggtggcgcggctacaacttttgcccat
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| CDS seq | atgggcaaaagttgtagccgcgccaccgccaccgtgctgctgcttctcgtcgtcgtcgtcttcctctcgtcgtcgcgtccattcccgtgcgaggcgcgccgcgacagcctcccccggggcgcctccatcgccgtcgaggaccacgccaccgacgtcctgctctccccggacggcaccttcgccgccggcctctacggcgtctcgcccaccgtcttcaccttctccgtctggttcgcgcgcgccgcgggccgcaccgtcgtctggtcagccaaccgcggccgcgcccccgtccacggcgcgcgctcccgcgttgcgctcgacggccgccgcggcgcgctcgtcctcaccgactacgacggcgaggtggtatggaactcaaccgtcgccaacgccaccgccgctcgcgcgcggctgcacgactccggcaacctcgccatcgaggacgcgagcgggaacatcctatggcagagcttcgatcaccccaccgacaccctgcttcccacccagcgcatcgtcgccgccggcgaggcgatggtctcggcaggcaagctcctcgccgccggcttctacagcctccgcttcagcgactacgccatgctctcgctggtgtacgacaaccacaagatgcccagcagcatctactggcctaacccctactacagctactggcagaacaaccgcaacatctactacaacttcacccgggaagctttcttcgacgcctccggccatttcttgtccagcgacaatgcgaccttcgacgccgccgacctcggcgagggcgccggcgtcaggaggaggctgacgctggacacggacggcaacctcaggctgtacagcctggatgagatggccgggacatggtcggtgtcgtggatggcgttcgtcaacccgtgcgtcatccacggcgtgtgcggcgccaacgccgtgtgcctctactcgccggcgccagtgtgcgtctgcgtgccggggtacgcgcgcgccgacgcgagcgactggacaagaggctgccagccgacgttcaaccacaccgacggcggcggcggccggccgcgggcgatgaagctggtggcgctgccgcacaccgacttctggggcttcgacatcaacagcagcgcgcacctgtcgctgcacgagtgcacggcgcggtgcatgagcgagccgtcgtgcgtggtgttcgagtacaagcagggcacaggagagtgctacaccaagggcctcatgttcaatggcagaacacaccctgcccatcttgggacggcctatctcaaggtcccagctgatctcgacatgccagagttgcacgtccaccaatggcagacgaatggccttgccattgaggaagacattgctggatgtagtggctcaagctcatcagagttcttgctcgatgtttccgatatgtcgtcgagctcgagcaataatcagggcaagtcaatatggttctacttctatggattcctgtctgcaatttttgtcattgaggtgtttctgatcgcgatgggttgctggatcttttccaacaagggagttttcaggccaagccaggtttcggtactagaagaagggtacaggattgttactagccattttcgcgcatataggtactcggagttggagaggggaactaaaaagttcaacaacaagatcggtcatggtggatcaggtatagtatacaaggggagtttagacgatgagagggtagtggccgtcaaggtgctacaagatgtgagccagagtgaggatgttttccaagccgagttgagtgtgattggtaggatttatcatatgaatcttgtgagaatgtggggattttgctcggaaggaacacataggattttagtctatgagtacattgagaatggatcattggccaaagtactatttgataggagagattccagcaagtttcttggatggaagcaaaggttcaacattgctctaggtgtggccaaggggttggcatatcttcacaatgaatgcctagagtggatcatccattgtgacatgaagcccgagaacatattgttggatgaagatatggagcctaaaatcactgactttggcttgtccaagttgttgaacagagatgggtctggttctgaaatgtcacggattcgggggacgagaggatatatggctcccgagtgggtttctagccttcccatcaccgagaaggttgatgtgtatagttatggagttgttcttcttgagctggtgaaagggaggaggattacagaatgggtagtggatgggaaagatggagtagaaactgatgtgagaagcgtggttaagatggttgttgacaaactggacagcaagaatgaatcatggattatggacttaattgatgatcaatttggtggtgaatttaatcatttgcaggctcagctagttataaaattggccatttcatgcctggaagaagatagaaacaggaggccaagcatgaagtacatagtgcaaatgctcatttctgctgaagatgaagctcatgcctttacctaa
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| Protein seq | MGKSCSRATATVLLLLVVVVFLSSSRPFPCEARRDSLPRGASIAVEDHATDVLLSPDGTFAAGLYGVSPTVFTFSVWFARAAGRTVVWSANRGRAPVHGARSRVALDGRRGALVLTDYDGEVVWNSTVANATAARARLHDSGNLAIEDASGNILWQSFDHPTDTLLPTQRIVAAGEAMVSAGKLLAAGFYSLRFSDYAMLSLVYDNHKMPSSIYWPNPYYSYWQNNRNIYYNFTREAFFDASGHFLSSDNATFDAADLGEGAGVRRRLTLDTDGNLRLYSLDEMAGTWSVSWMAFVNPCVIHGVCGANAVCLYSPAPVCVCVPGYARADASDWTRGCQPTFNHTDGGGGRPRAMKLVALPHTDFWGFDINSSAHLSLHECTARCMSEPSCVVFEYKQGTGECYTKGLMFNGRTHPAHLGTAYLKVPADLDMPELHVHQWQTNGLAIEEDIAGCSGSSSSEFLLDVSDMSSSSSNNQGKSIWFYFYGFLSAIFVIEVFLIAMGCWIFSNKGVFRPSQVSVLEEGYRIVTSHFRAYRYSELERGTKKFNNKIGHGGSGIVYKGSLDDERVVAVKVLQDVSQSEDVFQAELSVIGRIYHMNLVRMWGFCSEGTHRILVYEYIENGSLAKVLFDRRDSSKFLGWKQRFNIALGVAKGLAYLHNECLEWIIHCDMKPENILLDEDMEPKITDFGLSKLLNRDGSGSEMSRIRGTRGYMAPEWVSSLPITEKVDVYSYGVVLLELVKGRRITEWVVDGKDGVETDVRSVVKMVVDKLDSKNESWIMDLIDDQFGGEFNHLQAQLVIKLAISCLEEDRNRRPSMKYIVQMLISAEDEAHAFT |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0002220 | OsCMeo_12g0002220.01 | Chr12 | 1499500 | 1502007 | - | NAM | ||
| CDS seq | atgggcaaaagttgtagccgcgccaccgccaccgtgctgctgcttctcgtcgtcgtcgtcttcctctcgtcgtcgcgtccattcccgtgcgaggcgcgccgcgacagcctcccccggggcgcctccatcgccgtcgaggaccacgccaccgacgtcctgctctccccggacggcaccttcgccgccggcctctacggcgtctcgcccaccgtcttcaccttctccgtctggttcgcgcgcgccgcgggccgcaccgtcgtctggtcagccaaccgcggccgcgcccccgtccacggcgcgcgctcccgcgttgcgctcgacggccgccgcggcgcgctcgtcctcaccgactacgacggcgaggtggtatggaactcaaccgtcgccaacgccaccgccgctcgcgcgcggctgcacgactccggcaacctcgccatcgaggacgcgagcgggaacatcctatggcagagcttcgatcaccccaccgacaccctgcttcccacccagcgcatcgtcgccgccggcgaggcgatggtctcggcaggcaagctcctcgccgccggcttctacagcctccgcttcagcgactacgccatgctctcgctggtgtacgacaaccacaagatgcccagcagcatctactggcctaacccctactacagctactggcagaacaaccgcaacatctactacaacttcacccgggaagctttcttcgacgcctccggccatttcttgtccagcgacaatgcgaccttcgacgccgccgacctcggcgagggcgccggcgtcaggaggaggctgacgctggacacggacggcaacctcaggctgtacagcctggatgagatggccgggacatggtcggtgtcgtggatggcgttcgtcaacccgtgcgtcatccacggcgtgtgcggcgccaacgccgtgtgcctctactcgccggcgccagtgtgcgtctgcgtgccggggtacgcgcgcgccgacgcgagcgactggacaagaggctgccagccgacgttcaaccacaccgacggcggcggcggccggccgcgggcgatgaagctggtggcgctgccgcacaccgacttctggggcttcgacatcaacagcagcgcgcacctgtcgctgcacgagtgcacggcgcggtgcatgagcgagccgtcgtgcgtggtgttcgagtacaagcagggcacaggagagtgctacaccaagggcctcatgttcaatggcagaacacaccctgcccatcttgggacggcctatctcaaggtcccagctgatctcgacatgccagagttgcacgtccaccaatggcagacgaatggccttgccattgaggaagacattgctggatgtagtggctcaagctcatcagagttcttgctcgatgtttccgatatgtcgtcgagctcgagcaataatcagggcaagtcaatatggttctacttctatggattcctgtctgcaatttttgtcattgaggtgtttctgatcgcgatgggttgctggatcttttccaacaagggagttttcaggccaagccaggtttcggtactagaagaagggtacaggattgttactagccattttcgcgcatataggtactcggagttggagaggggaactaaaaagttcaacaacaagatcggtcatggtggatcaggtatagtatacaaggggagtttagacgatgagagggtagtggccgtcaaggtgctacaagatgtgagccagagtgaggatgttttccaagccgagttgagtgtgattggtaggatttatcatatgaatcttgtgagaatgtggggattttgctcggaaggaacacataggattttagtctatgagtacattgagaatggatcattggccaaagtactatttgataggagagattccagcaagtttcttggatggaagcaaaggttcaacattgctctaggtgtggccaaggggttggcatatcttcacaatgaatgcctagagtggatcatccattgtgacatgaagcccgagaacatattgttggatgaagatatggagcctaaaatcactgactttggcttgtccaagttgttgaacagagatgggtctggttctgaaatgtcacggattcgggggacgagaggatatatggctcccgagtgggtttctagccttcccatcaccgagaaggttgatgtgtatagttatggagttgttcttcttgagctggtgaaagggaggaggattacagaatgggtagtggatgggaaagatggagtagaaactgatgtgagaagcgtggttaagatggttgttgacaaactggacagcaagaatgaatcatggattatggacttaattgatgatcaatttggtggtgaatttaatcatttgcaggctcagctagttataaaattggccatttcatgcctggaagaagatagaaacaggaggccaagcatgaagtacatagtgcaaatgctcatttctgctgaagatgaagctcatgcctttacctaa
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| Protein seq | MGKSCSRATATVLLLLVVVVFLSSSRPFPCEARRDSLPRGASIAVEDHATDVLLSPDGTFAAGLYGVSPTVFTFSVWFARAAGRTVVWSANRGRAPVHGARSRVALDGRRGALVLTDYDGEVVWNSTVANATAARARLHDSGNLAIEDASGNILWQSFDHPTDTLLPTQRIVAAGEAMVSAGKLLAAGFYSLRFSDYAMLSLVYDNHKMPSSIYWPNPYYSYWQNNRNIYYNFTREAFFDASGHFLSSDNATFDAADLGEGAGVRRRLTLDTDGNLRLYSLDEMAGTWSVSWMAFVNPCVIHGVCGANAVCLYSPAPVCVCVPGYARADASDWTRGCQPTFNHTDGGGGRPRAMKLVALPHTDFWGFDINSSAHLSLHECTARCMSEPSCVVFEYKQGTGECYTKGLMFNGRTHPAHLGTAYLKVPADLDMPELHVHQWQTNGLAIEEDIAGCSGSSSSEFLLDVSDMSSSSSNNQGKSIWFYFYGFLSAIFVIEVFLIAMGCWIFSNKGVFRPSQVSVLEEGYRIVTSHFRAYRYSELERGTKKFNNKIGHGGSGIVYKGSLDDERVVAVKVLQDVSQSEDVFQAELSVIGRIYHMNLVRMWGFCSEGTHRILVYEYIENGSLAKVLFDRRDSSKFLGWKQRFNIALGVAKGLAYLHNECLEWIIHCDMKPENILLDEDMEPKITDFGLSKLLNRDGSGSEMSRIRGTRGYMAPEWVSSLPITEKVDVYSYGVVLLELVKGRRITEWVVDGKDGVETDVRSVVKMVVDKLDSKNESWIMDLIDDQFGGEFNHLQAQLVIKLAISCLEEDRNRRPSMKYIVQMLISAEDEAHAFT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.330282 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0130300 | RBH | 0.0 | 0.0 | 0.260378 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03650 | RBH | 0.0 | 0.0 | 0.067026 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0130300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002000 | RBH | 0.0 | 0.0 | 0.252874 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002200 | RBH | 0.0 | 0.0 | 0.374046 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002190 | RBH | 1.101931 | 0.0 | 1.878178 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002030 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002220 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0026200 | RBH | 0.5567205 | 1.3153055 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002230 | RBH | 0.118008 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0027100 | RBH | 0.923092 | 1.872028 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002190 | RBH | 0.0 | 0.0 | 0.093695 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002220 | RBH | 0.049379 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002130 | RBH | 0.235437 | 0.0 | 0.148408 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002350 | RBH | 1.537756 | 0.0 | 0.180390 |
