Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0023580 | OGI:11080940 | 11/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:27496113-27497981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaagcactgcggtggacctatgaacatcttgatgttcctgtccaacgatgcttttcttattgcagtattttccccagaggacatcatttttacagtgatgagttaattaatttgtgggtggcagaagggtttattgattcttatggaggaaaatatgagctggaagcagttggtcagctgtactttgacaaactagtatcatgctcatttctacagaaagaaaatttgagggattcctttacagttccagatcttgtgcattttttagcagtggaggtcgcaggaagtgaatgtttcagtattaaaaatggttgggaaggagatcttcctcaaaatgttcaccacctttttattgagattgacgacggaaatagcaatgaggagatcttagaattgacggaactgcgaactctgataataaatcatactggacagaattggcaaaatttgagctacgaaatctttgagcgtgtgttcatgaacctgcctatgttgcgggtactgatactgaaagtagagtggtttccatctgaaacgaagatttttgatgtcccacaatctattaatttgttaaggcatctgcgctattttggtttcagggtgtccgtgatacatacgtgtttgtgggtgttaaatttgccagccacatttgctcggctttaccatctgctggtgttagatgttaaaggtttcgacaagttgtcattcgctttaattgaagatatgagtgacctcaccaagttgcggcatgtaataattgactcggaagatcctcattttccacacattggaagacacgggtcactccgaacatttgagcatttcactgtaaagatggaaccggggtatgagttaaatcagctgaagcgactgaacaagcttcatggtgaactgaatatttatggccttgaaaatgttccaggcaatgaggatgctcttcaacccgaactgcataagaaggaaaacctcactagagtgaaactgtcctggggtaacccccaagaacaagttctccagtcactggtacttagggcccttcgcccaccagtgtggcttcaaacacttcaaatcgttcgctacaagggtttggcgtatccagactggatgatgaccaatggtccagaagtcccaaagtgcctgcaggatcttaagctcgaagaatgtagacaactgggagaagaaattcctgagcataacaagcttttcaagtatcttcgtatactacatgttgccaactgcgactgggagttctttccagccaatatggagcgcctcgagtcgctccagaagttagaaatcgaagattgtactaatcttcaatcacttccaacaaaactgccctggtctcttcgtatacttcatatttctaactgtaacagatggaaccactggccggataacatggaggaccacctgtcgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagcacagctgtccagctctcttgagaaattgaaggtaacggccggatgccccgaaattagttcgcttccagtaatgcccaattcattgttggagttgattctcgggagccgcaatcaggaattcataacgtcctgcaaaacacctggacatcaacactatgaaaatatcagccacgttccccacaaaataattgaatacggtaaggctttaaatcctcttttattgctgcgtaccaatattcccctgttgattaatgtatatgtgaagtgggcctgtcaacagattcagacgaggacgaagaaatggaagacaatcaatgaagatctttatccattggaagacggcgaagggagtgttctgcgaggcgtcgatccagaccggttgtggattgtgacataa
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| CDS seq | atggaagcactgcggtggacctatgaacatcttgatgttcctgtccaacgatgcttttcttattgcagtattttccccagaggacatcatttttacagtgatgagttaattaatttgtgggtggcagaagggtttattgattcttatggaggaaaatatgagctggaagcagttggtcagctgtactttgacaaactagtatcatgctcatttctacagaaagaaaatttgagggattcctttacagttccagatcttgtgcattttttagcagtggaggtcgcaggaagtgaatgtttcagtattaaaaatggttgggaaggagatcttcctcaaaatgttcaccacctttttattgagattgacgacggaaatagcaatgaggagatcttagaattgacggaactgcgaactctgataataaatcatactggacagaattggcaaaatttgagctacgaaatctttgagcgtgtgttcatgaacctgcctatgttgcgggtactgatactgaaagtagagtggtttccatctgaaacgaagatttttgatgtcccacaatctattaatttgttaaggcatctgcgctattttggtttcagggtgtccgtgatacatacgtgtttgtgggtgttaaatttgccagccacatttgctcggctttaccatctgctggtgttagatgttaaaggtttcgacaagttgtcattcgctttaattgaagatatgagtgacctcaccaagttgcggcatgtaataattgactcggaagatcctcattttccacacattggaagacacgggtcactccgaacatttgagcatttcactgtaaagatggaaccggggtatgagttaaatcagctgaagcgactgaacaagcttcatggtgaactgaatatttatggccttgaaaatgttccaggcaatgaggatgctcttcaacccgaactgcataagaaggaaaacctcactagagtgaaactgtcctggggtaacccccaagaacaagttctccagtcactggtacttagggcccttcgcccaccagtgtggcttcaaacacttcaaatcgttcgctacaagggtttggcgtatccagactggatgatgaccaatggtccagaagtcccaaagtgcctgcaggatcttaagctcgaagaatgtagacaactgggagaagaaattcctgagcataacaagcttttcaagtatcttcgtatactacatgttgccaactgcgactgggagttctttccagccaatatggagcgcctcgagtcgctccagaagttagaaatcgaagattgtactaatcttcaatcacttccaacaaaactgccctggtctcttcgtatacttcatatttctaactgtaacagatggaaccactggccggataacatggaggaccacctgtcgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagcacagctgtccagctctcttgagaaattgaagattcagacgaggacgaagaaatggaagacaatcaatgaagatctttatccattggaagacggcgaagggagtgttctgcgaggcgtcgatccagaccggttgtggattgtgacataa
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| Protein seq | MEALRWTYEHLDVPVQRCFSYCSIFPRGHHFYSDELINLWVAEGFIDSYGGKYELEAVGQLYFDKLVSCSFLQKENLRDSFTVPDLVHFLAVEVAGSECFSIKNGWEGDLPQNVHHLFIEIDDGNSNEEILELTELRTLIINHTGQNWQNLSYEIFERVFMNLPMLRVLILKVEWFPSETKIFDVPQSINLLRHLRYFGFRVSVIHTCLWVLNLPATFARLYHLLVLDVKGFDKLSFALIEDMSDLTKLRHVIIDSEDPHFPHIGRHGSLRTFEHFTVKMEPGYELNQLKRLNKLHGELNIYGLENVPGNEDALQPELHKKENLTRVKLSWGNPQEQVLQSLVLRALRPPVWLQTLQIVRYKGLAYPDWMMTNGPEVPKCLQDLKLEECRQLGEEIPEHNKLFKYLRILHVANCDWEFFPANMERLESLQKLEIEDCTNLQSLPTKLPWSLRILHISNCNRWNHWPDNMEDHLSLLELEIEDCRDIESLPAQLSSSLEKLKIQTRTKKWKTINEDLYPLEDGEGSVLRGVDPDRLWIVT |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0023580 | OsCMeo_11g0023580.01 | Chr11 | 27496113 | 27497981 | + | NAM | ||
| CDS seq | atggaagcactgcggtggacctatgaacatcttgatgttcctgtccaacgatgcttttcttattgcagtattttccccagaggacatcatttttacagtgatgagttaattaatttgtgggtggcagaagggtttattgattcttatggaggaaaatatgagctggaagcagttggtcagctgtactttgacaaactagtatcatgctcatttctacagaaagaaaatttgagggattcctttacagttccagatcttgtgcattttttagcagtggaggtcgcaggaagtgaatgtttcagtattaaaaatggttgggaaggagatcttcctcaaaatgttcaccacctttttattgagattgacgacggaaatagcaatgaggagatcttagaattgacggaactgcgaactctgataataaatcatactggacagaattggcaaaatttgagctacgaaatctttgagcgtgtgttcatgaacctgcctatgttgcgggtactgatactgaaagtagagtggtttccatctgaaacgaagatttttgatgtcccacaatctattaatttgttaaggcatctgcgctattttggtttcagggtgtccgtgatacatacgtgtttgtgggtgttaaatttgccagccacatttgctcggctttaccatctgctggtgttagatgttaaaggtttcgacaagttgtcattcgctttaattgaagatatgagtgacctcaccaagttgcggcatgtaataattgactcggaagatcctcattttccacacattggaagacacgggtcactccgaacatttgagcatttcactgtaaagatggaaccggggtatgagttaaatcagctgaagcgactgaacaagcttcatggtgaactgaatatttatggccttgaaaatgttccaggcaatgaggatgctcttcaacccgaactgcataagaaggaaaacctcactagagtgaaactgtcctggggtaacccccaagaacaagttctccagtcactggtacttagggcccttcgcccaccagtgtggcttcaaacacttcaaatcgttcgctacaagggtttggcgtatccagactggatgatgaccaatggtccagaagtcccaaagtgcctgcaggatcttaagctcgaagaatgtagacaactgggagaagaaattcctgagcataacaagcttttcaagtatcttcgtatactacatgttgccaactgcgactgggagttctttccagccaatatggagcgcctcgagtcgctccagaagttagaaatcgaagattgtactaatcttcaatcacttccaacaaaactgccctggtctcttcgtatacttcatatttctaactgtaacagatggaaccactggccggataacatggaggaccacctgtcgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagcacagctgtccagctctcttgagaaattgaagattcagacgaggacgaagaaatggaagacaatcaatgaagatctttatccattggaagacggcgaagggagtgttctgcgaggcgtcgatccagaccggttgtggattgtgacataa
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| Protein seq | MEALRWTYEHLDVPVQRCFSYCSIFPRGHHFYSDELINLWVAEGFIDSYGGKYELEAVGQLYFDKLVSCSFLQKENLRDSFTVPDLVHFLAVEVAGSECFSIKNGWEGDLPQNVHHLFIEIDDGNSNEEILELTELRTLIINHTGQNWQNLSYEIFERVFMNLPMLRVLILKVEWFPSETKIFDVPQSINLLRHLRYFGFRVSVIHTCLWVLNLPATFARLYHLLVLDVKGFDKLSFALIEDMSDLTKLRHVIIDSEDPHFPHIGRHGSLRTFEHFTVKMEPGYELNQLKRLNKLHGELNIYGLENVPGNEDALQPELHKKENLTRVKLSWGNPQEQVLQSLVLRALRPPVWLQTLQIVRYKGLAYPDWMMTNGPEVPKCLQDLKLEECRQLGEEIPEHNKLFKYLRILHVANCDWEFFPANMERLESLQKLEIEDCTNLQSLPTKLPWSLRILHISNCNRWNHWPDNMEDHLSLLELEIEDCRDIESLPAQLSSSLEKLKIQTRTKKWKTINEDLYPLEDGEGSVLRGVDPDRLWIVT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0668100 | SBH | 0.545508 | 1.187026 | 0.660127 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024090 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023530 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023320 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023930 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0435500 | RBH | 1.4588065 | 0 | 0.075864 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024250 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0435600 | SBH | 0.2172335 | 0.077836 | 1.2482735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024120 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024110 | RBH | 0.420982 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023550 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023310 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023780 | RBH | 0.0 | 0.0 | 0.594109 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
