Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0016850 | OGI:06035010 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:19978595-19983776 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaacggccgccgcccgactaaacataccaatagtcaccaaattcatatgggctactgaggagtaggcaatgatcttcttaagatcgatctgtcttaaagtggtcaaggaagtatatattattgcaatcgcgcttagagtataaatgaaaggagtgaaacaaagtgtcgcttcgggaaacatgggtattgaaaatcttaaaaacccgtaggttcccaattttaaaagaattcatgccaagatgacggatccagccgtaggtgcctctacatgggcttcgggtaaccaaatatgaactggtaccataggcactttgacggcaaaagaggcgaaaaaagcaatcctgtcacagcctgaatttccgtttcaggatttataaattatttaataaattattaatagaatttatattaaatgttcattaatttacaagtgaagttaaatgtgggaaataaaatttcctaaatataaagcatggatggatttaattattattaaattctccatggttaattatactctctggaatattctcggatttttcggagctcaattcctaatttttaatcatacaaagagcatttcagtaattacccacatattaaattaatcattaaatggtctaattataatttttttaagtactttgagtgtccaagtattttcaggatttttcttgaaattatttgagcattggaagtatttttaacaattcaaagatcatttaagtgattattttaattggaaaagtaataaaatcctcctcctcagcttgggccattttcggcccatttcttcctttccttcctctctcttccgccggcccaacccgagcctgcatcctctcttcttctctcagccaaagtccggttttgctccctcttctaatcaggctgagaaaagaaaagcccggcaagaagtctactttccctccctgcgctactgttcatcttccagctcaggcagagcccgagccagccgtgccgtgcctgttgccgccgatccccttccaaaatccaacctctccgttgctcctttctccaaattagttgtgggaatggaatcctctcaatctcctcttccttttccccaagaaatccccaaaattttctatggaaattctttccaatttcgcggatcaaatccttcctttttccggcgaagatctaaattttcccgagtttttcccatcgttgtgggctcgatcccggccttccatggctatttaaaggaccccctagtcgtcctctacccatcccctcaagtcccgtcttccgccgtcgccggaaacgttctccccacgctctccctctctctccacctccgtccgccgctccagccgccattcgccgtcgccccggccgtcgccggtagcgccgccacctccctcggcttcgcagtgaagagctctaccccggccaccagttcttttgcgccgaaccccgccggaagtcgccgtcaccgtgaaggccgaaccgttgccatgttttgatctccggcgaagctttgccgtcgactccgtggtcgccggacctcgccgtatccactgtcggcatcgcagcagtgaggagaaacccggcagccacctccgcgaagacgcaagccatcggagcaccgtcgtcaccgtgaagccgatctgttccatcttcagtcgcgccgttcgttgtcgtccgtcgtcgccctctgtcgccatcgactccattgggttcgcaggagcaaggtgaagcccggccatcggtttttcttcgccgaagatcgctgaaacgtcgccgccatcgctgacccgaccccgtcgccgcctctacctcgctgccggccgtctgccgtcatcttccatcgtcgcgccacccctcagtgagctttcctctctccgatgtcattcaccggtgtagtttatctatagggtcttaatctaatctaatctatttcggaggttgctttaatcttttatcttacttataaatcatttgtaaattgtttaattaattaaaatagtcttttctttaataggtttaattggaattaaatcttgtaaaattcgtaactaattcatatgaagtcagaatgaggctgttcaagtctcataattcatctaaaatcatgatttacatgtttgtttactttatatgtactgtttatttggtttttattagtctttttcttcgttttacgtgttagcttgtcgtttccgtcgtttcgaaggttcgtgagtgcgtcgggagtgttcagaagattaattgaagaccgattattgcaaggcaagtcacacagatcctaaacacaaccctttgagcatgttgatcctatatttaaattctctatttatttcaactgtgcatttattttcgaatgtcactgggtggtgtgaatctattcctttgtttatggcctatttgcattgattactttattccttgataccttgggttattataacttgactagttgagctttatatattggttcagctagatattagatatgattgcttagccatgcttagaaacattagcacactattgggataacttatgactcactattatttaatgatggctaaatgatagttcacgatggttaatcgtgattgttaattaattacttgccaactaaaacttgataatggtgggttgtgagcacatggttttgagagtcgtgctcatgacaattaaggaccggttcgcgagctactgttgtgaaacattaaccgtgccaaccacaagccagcgtgggcaacggctttaccttttgtatagcatggttcattgcggagcaccagactgagaagtggcggagataagcccacgggggtcgctggggagtccatgccttgttttataagggggtgattatgatccaggaatggtgcgctgcggtggattgtgttatgcaaggggtattgtcacagctcctttccgagataccgtggtggtattgaggcacatggtgacatgttgtggggctgtatcttgtgggtacagtggtacacctctggccagagtaaaactattcgaatagccgtgcccgcggttatgggcgggttgagcaatgtttttcgtgattagtctcacacctctcacaataattattgatgctataactggtaataatttgtttagctcctggtttggagttagatctgtacagccgggtatggttcttcaggatggttgggcctgtgcagcatgggtgtgctgttcagtgttgattaaaatttctgattaattactccactgttttacttctcttaaatgttttgctaaatgctgcttttgcaaatgagcctatattatgccatcctttggtatccttgtgcacttgcatatttgctgtgtggcttgctgagtatgtcatatgctcaccttgcaataatcgatcaacctcagttgaagaaaaaggatccagaaggagaagacgtttggcttataccccagttgagctgcctgtgggagtggagccggagtttcgctagattttattttccactgcaattttcttcttggtgaggactaagtgcctcttaagtaagtatttatcgttttagttaatttgatgaatctgtatattaaattgtcagtttgtgtacctcggctgattcctggacgaggattttatgcacaaataagttcggaaattactagtgaatttccgggcgtgacaaatccatagaaggatttggcgccgctcactaaattctgtggttaataaaatttgtaaatcggtggttcctgtttggagaagaatcaacagaatagctaatagcataaaaacggatcacagtaaagtatataggaaaaactgatatgctgccttgatctttctttgtctcgaaccccatacccgtataatgatggtagagtcaggggtggccccaaagcggaattgaccagtggtggttggtcgaagctccagtgggtagccactcctttctcagggaaccgtacgtgagacttccgcatcatacggctccgtcccgagcttccgtcatcggcccttgtcattagaccactatgcttgtcttttccgccttgactctcgaatcttttgcttctcgggtggtggcgaaccatgctgcttgcgtagcgggagatgcccgcccgtcgggcccggcctgcttcctgcccgaaagaaggctagcaggactagtggtagggccgtcaaaaaccctacctttcgaacccgcccgttcgttatatctaacgatagagagatccgtgaaagtcattgccttatgttatggtcgccccccgactgacggcctttacgcaactacgactactgtgatgtgagcggttctattggtttgatctttccggcctccacttgtacgaagatgcatgcataaagggacccgcccctttatttatcttgattttctttattaggacaggaccctaccctattctcgaaccctccgccgagctctaccttgcccgcatttgtttggaagggggccaaagaaatgtctgcacctgctgccaacagtctttcttcagaattctactgaacgggtcgatcctcccccccacccccccgtttgttttagcaacttatcctaaggtctcttcaccaagaactctccagcaacgacagaggaactaacctacctactgtggcggggcggcttttttttaaacaataagacctggatgattatccctacagaggcccctgcagaggaaaagcttgatcccagcgaatagaagatgctcagctccgcacaacatagggattggcacgctttcggaaagaacatagaatagtagaggatccagcatgcaggacacggtgatcattagaaattcacgaattagaaatgctgtaatatactctttcccaaaacttctcataccagaccaacccactgaaatgcaaatagggatcagaaatgtggtcaatatcacgaagaataatgaaacaccgtctatacccatatacaaatggatgttttcataaggaagccatcgaaggctttccacaaattgagatttggccgtagaaggatcgaattgtatccgaggaacaaggggatacaaaaaagtaataagagaaacgcacagaccaatcaatcgtatcagtcttattgaagaatttggaatgaaaagaagagtaatgcttcctagcacgggacagagaataggaccacttagatcgaaatagcattcacagaaatgttctaacat
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| CDS seq | atgttagaacatttctgtgaatgctatttcgatctaagtggtcctattctctgtcccgtgctaggaagcattactcttcttttcattccaaattcttcaataagactgatacgattgattggtctgtgcgtttctcttattacttttttgtatccccttgttcctcggatacaattcgatccttctacggccaaatctcaatttgtggaaagccttcgatggcttccttatgaaaacatccatttgtatatgggtatagacggtgtttcattattcttcgtgatattgaccacatttctgatccctatttgcatttcagtgggttggtctggtatgagaagttttgggaaagagtatattacagcatttctaattcgtgaatttctaatgatcaccgtgtcctgcatgctggatcctctactattctatatcgatcttaagaagatcattgcctactcctcagtagcccatatgaatttgtcgggcggcggccgttag
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| Protein seq | MLEHFCECYFDLSGPILCPVLGSITLLFIPNSSIRLIRLIGLCVSLITFLYPLVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGVSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMITVSCMLDPLLFYIDLKKIIAYSSVAHMNLSGGGR |
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| Function | NADH-ubiquinone oxidoreductase chain 4 [UniProtKB/Swiss-Prot:P27572] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0016850 | OsCMeo_11g0016850.01 | Chr11 | 19978595 | 19983776 | - | NAM | ||
| CDS seq | atgttagaacatttctgtgaatgctatttcgatctaagtggtcctattctctgtcccgtgctaggaagcattactcttcttttcattccaaattcttcaataagactgatacgattgattggtctgtgcgtttctcttattacttttttgtatccccttgttcctcggatacaattcgatccttctacggccaaatctcaatttgtggaaagccttcgatggcttccttatgaaaacatccatttgtatatgggtatagacggtgtttcattattcttcgtgatattgaccacatttctgatccctatttgcatttcagtgggttggtctggtatgagaagttttgggaaagagtatattacagcatttctaattcgtgaatttctaatgatcaccgtgtcctgcatgctggatcctctactattctatatcgatcttaagaagatcattgcctactcctcagtagcccatatgaatttgtcgggcggcggccgttag
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| Protein seq | MLEHFCECYFDLSGPILCPVLGSITLLFIPNSSIRLIRLIGLCVSLITFLYPLVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGVSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMITVSCMLDPLLFYIDLKKIIAYSSVAHMNLSGGGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 69.783821 | 39.965771 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34094 | SBH | 16.400557 | 14.169786 | 62.134060 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016910 | RBH | 12.769343 | 428.763550 | 244.466476 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013330 | SBH | 12.198366 | 225.319534 | 203.214340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015780 | SBH | 12.160054 | 141.187469 | 175.472839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016770 | RBH | 213.573547 | 1068.755737 | 1756.779175 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0202300 | SBH | 8.58146 | 57.7324275 | 32.4847775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010590 | SBH | 5.576010 | 8.634974 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010460 | SBH | 18.591888 | 593.019165 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010360 | SBH | 6.599814 | 230.413635 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
