Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0014170 | OGI:11050630 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:16723961-16732540 | ||||||||
| Gene Symbol | RLCK328, OsRLCK328 | ||||||||||
| DNA seq | ctcgggcttcgcatatcattcattctcgtctcctcgcggtcgcggcgcgggcgcgggcgcggcaggcgacgagggagccagcggcgacggagctcagcagggggcctgcgaatccctcggcctcgcgcgcgcatcgctcgcgcgccctcggcctcctcgcccccgtccacgcgcggcgcatcccgacgccatctccccatctccgctgtgcgcgcttctagatcgctttcgccaacccgacgtggcgacgtcccacccccggtaagtgcattcaccagcggcggttgatcaatcgcgtttaactccatcctagcaatcaggctaggcaccgaagcaatcagctggacgccgaatctgttgcccttttgttttttttcaattgacgcacaccaagtgtttgatcttttgtcagagagtagttaacgcttcgaaggatatcaaaggtagccctgaaagatgcatttcgttggattgcttacatttcgtgtgatgcaggtgtagtttaacgctgccccccccccccctgatttagtggcatacgaaaaatgtgtgattctgtcacacaattaatgtagtgttgcagattttctgatccaacaattcagaaccatagctaaaatattgaataatttggaacagtttggtatggttggattgaagggttgaaaatgaccttgaatgttttccttcttttttctttttgagcttaccccttccttaatcttcatgtttgaatgctatattactttcacatgcgtagcatctgcatttgagttctcatcaatagaatgacctttaattatggtatctagcaactcagtgcttcagggtcaagggagagggagagtatttgagtcacatatatataggttttggtccattggctctaatctcatttcgagcagagatagcttcagtttttccagcttgcgatttagtgatgacaagtagcataacaaaatgtgaccaacaatttcctccatgcttcagttctgcaggtttcgatgaatgttttccgcccagtgctgactttctttgttgttgttttttgtcaccagtgatttgatttttgcatgacaatcgttgtcttcttatgtgctggttctgatggaaccattgaagttacaaccattgaaccattgatttgtacaggtcatataatattcaatgctgattgtaccacctcctattagatggcttaatagttttccctttggaaattccacttgaggcatgggtctttcaaagttgttctgtgtaactgaaagcaggttgggtgaaagtagcatctatgataatttacattagtgtgttccctttggtgcaagacaccagatgctacatgactgagtgattgagtatactgtagtagctatcgcccgttgctggtgtcatattatacgcttctgttataatttacattgatttgttccctttggttcacgacaacagctgctacatgactaagtgattgagtagtagctatcactcctttttttcgccgggaaggccgaaggaggccatccgagatattaagaaggaataaagttacaagaaaaaactcgacagaggctgtcgaggtcggaggtgcatcgaaatgcacaaccaaagccacatgctaatcacacaagcacaacccactcagagaaaaacctagcaccgagacgacccccgctatgcgtggccgatcgccgccaggccaacgacaacaccacaaagacgagactctaaaagcgatgcccccaaggaggtcacgacatcaaggatgccgccatcgcccatctaaggagatgtggttttcacctagagaaaactcgccaagggagaaaggtatccttgccagcgccctcaaaggggttacgacgcccaaaagcgtagccgctgccagcccgatgaatcatcaggcgaggctttcacccggaaacctttcaaccttgcttgaggtttgtcgctcatcaactcaggaaccacctcacaagcagatcagcacgaggcctccaccacaccgcgccggcgcccctccaccggccgaccaccacacttgctgcatagagctgccgccaccctgggaactggcccagacctcctccgtcccgccacccgccggcctccttgccagctttggccgaaggagaacccggaattggacggcgtcgcgttggcggtctgagctcccctcgctaaccggctgccgcctcaatccaatatagaaactccccacagagaaggggaggagctccaggaagggcgagggtgcaggccggcagcgaggaagacaacccactgccgccagctcccttagcactgccatcactcccttcatgccctgcctcagggcctacgagccgccatgcccaccccaacgccaccaccgctgcaccagaaggccagaccgccgccgtccgaccgcccatgccgcgccgcgccgaccacgggccgatctggccgcgccctccgggagggccgccgccgccgccaccgccgccgccgtctatccgcccaggccgccgccggatgcagttggccccgccctccgtgagggctgccgccgccgcgccgacccccggccaccgccccgtgctggaccacggtgtcccacggccgcccgcgtcgagctgcgacacgcgcgctgcctccgagcccggccgtcgcgccgggggtagagcggccagatccggccaccgccggatccgccgccgtcgccaggccgcgccgcgccaccaccccgcgcttgcccgcgacgccccgcggccgaccgcgcgccgccggcgagccctggccgacgcgcctcccgatccggacgtggggcggccagatccggccaaagaagtgccggatccgccgccaccccgagctgccccgccgtcgtcgcctccggccgtggtggtagacgtcgtcagcccaactccgtcctcctcgtgccaaggaaagggttgctgtagtggaaggcctcgccgccgccttcccggctcgccgttgacgagctccggcggcggcgaggtgaagagagaagagggggagtggcggcgcgggcggctagggtttcgccccccgagccgcccgcgcgagagcgacgcgggggatgagagtgaattgctatcactccttgctggtgtcgtattatacttttctgctaaatctgaattaactaatcgattaatcaactgtgattccgtgactcagtgaattaactaatcgattgatcaattccaaagttggatggttcatctctgctggtcctttaattgatccatttgcacttgtgcggtacaatgtgtactattaatttggtttcataagttgttaaacatgtagcctggcccaaagcctaccatctcttgggattatgtaacactggtctcaaatgctactactgaccttaatgtttagaacatccctatgcacatgtttattttatgtatatgcaggccatcataatcaaacaagagtcatctaaacaatgactgacttaatattctatattacattaccatctaaactcgtcaatgatttcctgctgtaccttatgtaagaaaatagttattgggtggggaagaacattaaggtagtagtgatgtgtacgttgcgaattgatagttgtttggtgctgattggtcattctaagaaatttcgggaagtactggacaatcacttaaattttcttattgggaccataatggttgaattgcacaatgatgagataacacctggatgaactgtgtgatgagcttgcactgcattgtgggacaatggaactaatacttgtttgcgcgtttttcttgttggatgtttattttgggaacatatgtaatattcactgtataattatgttatttttgactgattattggttattcttgtattctatattacatatgtgcttgggaaatacttttcaaattctcagtttgattatttgcatttggttattttgttcatgagtgaggcatacatcaggatagcaaaattcacgataagatgttggaaaatggactaattacttaactttctctatccaaaacccatcaagcattgataactacagggcttattgagattctttcatgaattccgatgcatccactctaggtggataatcgagaaattctatcgagtgttttatccccaagatgcttttttttccttttcttttggaggcaattttgatctttttgttcaaagaatcctatgattcttctatatgaacaagccaaattagaatacatttccagtacgcatggactttaacttcgtatgattattaattatcctttgtatgctaagtatgcatttggcttttgtttaatcacatcatgacattgctaacatatattcattctctttattcatgtgttgttgacaggacccaactcctccggttaagcccaataatatctttttggatcaccacccctgttccccaaagcccctaccccacctgatacttcatccactggccacattggctctgctgtcctgaaccctaggtatcatccaaaggagggctcaatatcacAaaaatgcaatatctgtttgtttccaatatgcaatatttgaaaatgcaatacctcccagtgccaagcagggttagtttggagaatccccttgctgcacttctagtacatggctaatacaactagaaggggtggaaaggggattccctatacttaaccttactcatggtctccatatctacttcactctactatctttctacaaagtttatcttcttgtcttagacaccaacattaacacatctcacaagcttttggctcgtctcacatggcccctagggcaaaagggcgagggcttctacgaggggtaatcctcggggtagccttcgcccatttgttgtccatgttaaaacaatagcattttgtatctggagttctggatttttgctctgctgttacgccgttgctacatactgtgggattttggagcaactgagctcacctccatacacttcatctacaccataggtatgagttttcgtgaaaagtggaatccaatcatctctaggcttccaccccttactttactgtgttctaatgttgtgctgtctctgggtctcccaaattatccatgctatttgctttatgtttattatgtttctgtcattttttttatcaggaattaacaatgatggagcttatcaacttcagtgatgaagacttacacaagtttactaaaggtttctcagagaagaggttgcttggaaaaccaggagcctttgggcaggtttacaagggcaggaataaagagaataactatgcaaattgccctcgaaaagttgctaccaaaatttctaaaaggaaggatgagtatgtccggattatgtggaaggtaataattgccatgaaattaattggtgcagtaatgcatttgctgcattattattcaagcgtgtttgggtagattgtgcatatttgaaagatatattgcctgaattccattattatataagatgtgtctaggtagcttgtggttgtctgtacacagtaaaagaaattaccattatttgatttaaaaatgattaagtttctgacctgtcaataaattgttgcaccctgttttgttgcagcaagagatcaatgccctaagttcaatttcacatgcaaatgtcataaatcttgtggggtttgctgacacagaggagtactatgctctagtttatgaaagggctaaacaggacctcgaaggattcagaggtaaataaattttactgctcttttttttattttagggtttccaatgtaatcttattttgactggtattgattttgctacgaacagcatccaataaaggtgagttggatgctatcttgcttggagtggcatctggactggaagctattcattctgcaggctttgtccattgggacattcagttgaggaatattcttttgatgaaggtgaaattcttgttgtatttacgaataatttagagtaaatttcaaaaaaaaatatatagatactttgaccaaactatcagaaaattacagccttaagtcaatgtactacgataatacagatttagtaacaaaagtatcagaaaactacaggtttagcaccaatttaatcacagactacaatgtttatagctcaaacatatcagtcgtgctagggatttatactctaaaacctatagtttcttgataacttcaatattaaatatgtagttttgttatacctggtcttaaatatgtagttctatgataatttttttgtgctgaagctgcagtttgtgatacaaccccttaaatatgtagtttgcaacagtttggttaaagtatatgatttggcatctttaatgcaaatgataaaggtatgctttttttgtctgaactctaataagaccaagcaacatatatattttttagatggtctaagtcattatatggtgcacttctgtgcgtgtgcgagtgaaggttaacagccctgaagggccttatattaactatgatcttaactttggatagccatgaaagaaaatgcacctatacttccccctaaactataatactatgtcctatatctaaacctagtatggcattggcatcatacatcaagttcagaagatagtaaagttcataattgaagaatttcacaagatagaagggagatggatgtaaaaggttattcagtagcataatagagttagagaagtagaaggatctagcatctttactagatttatcagctagctttttcaactccctttttatggtaggatattcgttttcaagataatatgtcatgcatttgcctcagacatccaaaatagtccttagtttctatctgaaagtttaagattgttatttttgtttttaagtgtagatatattcgtcaatgttcatgcattagttatatgagtaaccaagcaaaataataataataaaataagaatttgtgtcttcctcttcatgtagagcagattcattgttatctcatagagctaacagaagcatgcaactgtaagttgctgggtgctggtcctatatttcattaagacatgaaatgtcatctttcaattctccaaaccatttgtatttgtatacttagatttgtattgcatctatactattttgttatgttccaaaatatgttcttattaaaactaatgatctgtgtacttgaacagagagtgcccaggaaaaatttgatgtcttctgttttggaaatctcatcagagaactggttttactagaaaggaaagagtggagccccacgaaatgtcccaggatacttttggcagatacatgtattgttaacaatccagatgatcgtccctcaatggctactttggtttcaaaattgaaggtattatgtgatttgctagttatttcgtttgagaataatgtgtcataacagtaatttttcgtgtacagcaaattcaagaggaagaatcagcaaaagtttgagtggtcacttttttaaagaggaagatatgttcacacataacaaaaggctaacaaaaggcggttatgaaggaattgatcttgttttgcgagtccctggaaggtagatttacttctatctcaaatatttcaaagttcaaatcagcattgggtacatttattactgtatggtctttgaacatgcataaatgaaagaacacaaattgtgagataatatccagtatagttatcacactcttcaggaaagatttccaagtatattagcatgttcaaagttcaaaatacaatgaggaagttgtattacttgcaaagttcaatatttttggtaacttggtccgttatttgaatttttaacttttagatcagcctttagctttaaaccctttaacttggtccgtaattaagtgcaaattcttgaagcattcatagatgtagagcatattataagttgtgcatttgaagaggtgtcaaaagttgcatgataaaaaaatgacaagtttgtgtatatatatttggcaatatcagtaatatacattgcttgtcttcttgtattgcacatgtgatggtggttttgcactttttttgcgtctatgcccctgctatatagtagtgtgcttcttaaacttgtgctaatccagatgggtgtagttgcatatcataagggcagaaaatccccttttttattttggaaactttggtctgcgtggttctttgttctcacaaagattgccttctgtttctgacggatttttccttattttcatttttcaggttccgtgtttagctatggtcaattggttactcaagctcaaaaagtgcgcgtgtatatataacaacatagaactagaaaacgtggacaccattgaagagtatgatgttgtcctatacgctcaacatactactagagtataatgtgtctaacagaattgagcttgctctcaaatcactgaagttcgatccactttcgatatcagctgttgatccaaatttgtattcaatacgatttagacaatttgtattgtagaagcttttccctgagcgagaccgaacagtaaatagcggcgatcccacatgtgtagatcttgtaaagaattagcatgtccattcgaattgtttttacgctcaacatgtttgttgtgaagatccaacgaatttctcg
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| CDS seq | atggcccctagggcaaaagggcgagggcttctacgaggggaattaacaatgatggagcttatcaacttcagtgatgaagacttacacaagtttactaaaggtttctcagagaagaggttgcttggaaaaccaggagcctttgggcaggtttacaagggcaggaataaagagaataactatgcaaattgccctcgaaaagttgctaccaaaatttctaaaaggaaggatgagtatgtccggattatgtggaagcaagagatcaatgccctaagttcaatttcacatgcaaatgtcataaatcttgtggggtttgctgacacagaggagtactatgctctagtttatgaaagggctaaacaggacctcgaaggattcagagagagtgcccaggaaaaatttgatgtcttctgttttggaaatctcatcagagaactggttttactagaaaggaaagagtggagccccacgaaatgtcccaggatacttttggcagatacatgtattgttaacaatccagatgatcgtccctcaatggctactttggtttcaaaattgaagcaaattcaagaggaagaatcagcaaaagttccgtgtttagctatggtcaattggttactcaagctcaaaaagtgcgcgtgtatatataacaacatagaactagaaaacgtggacaccattgaagagtatgatgttgtcctatacgctcaacatactactagagtataa
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| Protein seq | MAPRAKGRGLLRGELTMMELINFSDEDLHKFTKGFSEKRLLGKPGAFGQVYKGRNKENNYANCPRKVATKISKRKDEYVRIMWKQEINALSSISHANVINLVGFADTEEYYALVYERAKQDLEGFRESAQEKFDVFCFGNLIRELVLLERKEWSPTKCPRILLADTCIVNNPDDRPSMATLVSKLKQIQEEESAKVPCLAMVNWLLKLKKCACIYNNIELENVDTIEEYDVVLYAQHTTRV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0014170 | OsCMeo_11g0014170.02 | Chr11 | 16728743 | 16732336 | + | NAM | ||
| CDS seq | atggcccctagggcaaaagggcgagggcttctacgaggggaattaacaatgatggagcttatcaacttcagtgatgaagacttacacaagtttactaaaggtttctcagagaagaggttgcttggaaaaccaggagcctttgggcaggtttacaagggcaggaataaagagaataactatgcaaattgccctcgaaaagttgctaccaaaatttctaaaaggaaggatgagtatgtccggattatgtggaagcaagagatcaatgccctaagttcaatttcacatgcaaatgtcataaatcttgtggggtttgctgacacagaggagtactatgctctagtttatgaaagggctaaacaggacctcgaaggattcagagagagtgcccaggaaaaatttgatgtcttctgttttggaaatctcatcagagaactggttttactagaaaggaaagagtggagccccacgaaatgtcccaggatacttttggcagatacatgtattgttaacaatccagatgatcgtccctcaatggctactttggtttcaaaattgaaggttccgtgtttagctatggtcaattggttactcaagctcaaaaagtgcgcgtgtatatataacaacatagaactagaaaacgtggacaccattgaagagtatgatgttgtcctatacgctcaacatactactagagtataa
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| Protein seq | MAPRAKGRGLLRGELTMMELINFSDEDLHKFTKGFSEKRLLGKPGAFGQVYKGRNKENNYANCPRKVATKISKRKDEYVRIMWKQEINALSSISHANVINLVGFADTEEYYALVYERAKQDLEGFRESAQEKFDVFCFGNLIRELVLLERKEWSPTKCPRILLADTCIVNNPDDRPSMATLVSKLKVPCLAMVNWLLKLKKCACIYNNIELENVDTIEEYDVVLYAQHTTRV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0014170 | OsCMeo_11g0014170.01 | Chr11 | 16728743 | 16732336 | + | NAM | ||
| CDS seq | atggcccctagggcaaaagggcgagggcttctacgaggggaattaacaatgatggagcttatcaacttcagtgatgaagacttacacaagtttactaaaggtttctcagagaagaggttgcttggaaaaccaggagcctttgggcaggtttacaagggcaggaataaagagaataactatgcaaattgccctcgaaaagttgctaccaaaatttctaaaaggaaggatgagtatgtccggattatgtggaagcaagagatcaatgccctaagttcaatttcacatgcaaatgtcataaatcttgtggggtttgctgacacagaggagtactatgctctagtttatgaaagggctaaacaggacctcgaaggattcagagagagtgcccaggaaaaatttgatgtcttctgttttggaaatctcatcagagaactggttttactagaaaggaaagagtggagccccacgaaatgtcccaggatacttttggcagatacatgtattgttaacaatccagatgatcgtccctcaatggctactttggtttcaaaattgaagcaaattcaagaggaagaatcagcaaaagttccgtgtttagctatggtcaattggttactcaagctcaaaaagtgcgcgtgtatatataacaacatagaactagaaaacgtggacaccattgaagagtatgatgttgtcctatacgctcaacatactactagagtataa
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| Protein seq | MAPRAKGRGLLRGELTMMELINFSDEDLHKFTKGFSEKRLLGKPGAFGQVYKGRNKENNYANCPRKVATKISKRKDEYVRIMWKQEINALSSISHANVINLVGFADTEEYYALVYERAKQDLEGFRESAQEKFDVFCFGNLIRELVLLERKEWSPTKCPRILLADTCIVNNPDDRPSMATLVSKLKQIQEEESAKVPCLAMVNWLLKLKKCACIYNNIELENVDTIEEYDVVLYAQHTTRV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0014170 | OsCMeo_11g0014170.03 | Chr11 | 16723961 | 16732540 | + | IsoSeq | ||
| CDS seq | ctcgggcttcgcatatcattcattctcgtctcctcgcggtcgcggcgcgggcgcgggcgcggcaggcgacgagggagccagcggcgacggagctcagcagggggcctgcgaatccctcggcctcgcgcgcgcatcgctcgcgcgccctcggcctcctcgcccccgtccacgcgcggcgcatcccgacgccatctccccatctccgctgtgcgcgcttctagatcgctttcgccaacccgacgtggcgacgtcccacccccggacccaactcctccggttaagcccaataatatctttttggatcaccacccctgttccccaaagcccctaccccacctgatacttcatccactggccacattggctctgctg
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| Protein seq | LGLRISFILVSSRSRRGRGRGRRRGSQRRRSSAGGLRIPRPRARIARAPSASSPPSTRGASRRHLPISAVRASRSLSPTRRGDVPPPDPTPPVKPNNIFLDHHPCSPKPLPHLILHPLATLALL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr11 | 16729671 | 16731105 | + | OsCMeo_11g0014170.03 | OsCMeo_11g0014170.01,OsCMeo_11g0014170.03,OsCMeo_11g0014170.02 | All |
| SE | Chr11 | 16731283 | 16732153 | + | OsCMeo_11g0014170.03 | OsCMeo_11g0014170.03,OsCMeo_11g0014170.02 | All |
| SE | Chr11 | 16731283 | 16732153 | + | OsCMeo_11g0014170.01 | OsCMeo_11g0014170.01,OsCMeo_11g0014170.02 | All |
| A5 | Chr11 | 16728781 | 16729094 | + | OsCMeo_11g0014170.03 | OsCMeo_11g0014170.01,OsCMeo_11g0014170.03,OsCMeo_11g0014170.02 | All |
| A5 | Chr11 | 16731378 | 16732153 | + | OsCMeo_11g0014170.03 | OsCMeo_11g0014170.01,OsCMeo_11g0014170.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 12.353060 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0691500 | SBH | 1.386120 | 0.408207 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0121400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014250 | RBH | 0.0 | 0.0 | 1.418695 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014240 | RBH | 5230.645508 | 109.780006 | 1258.480835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0266500 | RBH | 156.615402 | 12.4452725 | 4.343688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0278800 | RBH | 180.963373 | 0.392562 | 0.6871875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014360 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013960 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014170 | RBH | 0.0 | 0.0 | 0.000000 |
