Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g29510 | OGI:11050630 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:17117873-17121629 | ||||||||
| Gene Symbol | RLCK328, OsRLCK328 | ||||||||||
| DNA seq | TTATACTCTAGTAGTATGTTGAGCGTATAGGACAACATCATACTCTTCAATGGTGTCCACGTTTTCTAGTTCTATGTTGTTATATATACACGCACACTTTTCGAGCTTGAGTAACCAATTGACCATAGCTGAACACGGAACCTGAAAAATGAAAATAAGGAAAAATGTGTCAAAAACAGAAGGCAATCTTTGTGAGAACAAAGAACCACGCAGACCAAAGTTTCCAAAATAAAAAAGGGGATTTTCTGCCCTTATGATATGCAACTACACCCATCAGGATTAGCACAAGTTTAAGAAGCACACTACTATATAGCAGGGGCATAGACGCAAAAAAAGTGCAAAACCACCATCACATGTGCAATACAAGAAGACAAGCAATGTATATTACTGATATTGCCAAATATATATACACAAACTTGTCATTTTTTTATCATGCACAAATATAGTCAACTTTTGACACCTCTTCAAATGCACAACTTATAATATGCTCTACATCTATGAATGCTTCAAGAATTTGCACTTAATTACGGACCAAGTTAAAGGGTTTAAAGCTAAAGGCTGATCTAAAAGTTAAAAATTCAAATAACGGACCAAGTTACCAAAAATATTGAACTTTGCAAGTAATACAACTTCCTCATTGTATTTTGAACTTTAAACATGCTAATATACTTAGAAATCTTTCCTGAAGAGTGTGATAACTATACTAGATATTATCTCAATTTGTGTTCTTTCATTTATGCATGTTCAAAGACCATACAGTAATAAATGTACCCAATGCTGACTTGAACTTTGAAATATTTGAGATAGAAGTAAATCTACCTTCCAGGGACTCGCAAAACAAGATCAATTCCTTCATAACCGCCTTTTGTTAGCCTTTTGTTATGTGTGAACATATCTTCCTCTTTAAAAAAGTGACCACTCAAACTTTTGCTGATTCTTCCTCTTGAATTTTCTGTACACGAAAAATTACTGTTATGACACATTATTCTCAAACGAAATAACTAGCAAATCACATAATACCTTCAATTTTGAAACCAAAGTAGCCATTGAGGGACGATCATCTGGATTGTTAACAATACATGTATCTGCCAAAAGTATCCTGGGACATTTCGTGGGGCTCCACTCTTTCCTTTCTAGTAAAACCAGTTCTCTGATGAGATTTCCAAAACAGAAGACACCAATTTTTTCCTGGGCACTCTCTGTTCAAGTACACAGATCATTAGTTTTAATAAGAACATATTTTGGAACATAACAAAATAGTATAGATGCAATACAAATCTAAGTATACAAATACAAATGGTTTGGAGAATTGAAAGATGACATTTCATGTCTTAATGAAATATAGGACCAGCACCCAGCAACTTACAGTTGCACGCTTCTGTTAGCTCTATGAGATAACAATGAATCTGCTCTACATGAAGAGGAAGACACAAATTCTTATTTTATTATTATTATTTTGCTTGGTTACTCATATAACTAATGCATGAACATTGACGAATATATCTACACTTAAAAACAAAAATAACAATCTTAAACTTTCAGATAGAAACTAAGGACTATTTTGGATGTCTGAGGCAAATGCATGACATATTATCTTGAAAAAGAATATCCTCCCATAAAAAGTGAGTTGAAAAAGCTAGCTGATAAATCTAGTAAAGATGCTAGATCCTTCTACTTCTCTAACTCTATTATGCTACTGAATAACCTTTTACATCCATCTCCCTTCTATCTTGTGAAATTCTTCAATTATGAACTTTACTATCTTCTGAACTTGATGTATGATGCCAATGCCATACTAGGTTTAGATATAGGACATAGTATTATAGTTTAGGGGGAAGTATGGGTGCATTTTCTTTTATGGCTATCCAAAGTTAAGATCATAGTTAATATAAGGCCCTTCAGGGCTGTTAACCTTCACTCGCACACACACAGAAGTGCACCATATAATGACTTAGACCATCTAAAAAATATATATGTTGCTTGGTCTTATTAGAGTTCAGACAAAAAAAGCATACCTTTATCATTTGCATTAAAGATGCCAAATCTTCTATCCTTGAAGAAACTCATCTTCTCTCCCTTCCTTGTGGCCAATCCAAAATCAGCAATTTTAACTGTATTATCCTGAAATTGTTATCATTTATTAGTCAAAGTAGACAATTACATGGTTCTCTAACAGCAACACATTTTTCCCGTAATAATAAAGTATTGACTGAATTTCACAAAAGTAAATATACTTTAACCAAACTGTTGCAAACTACATATTTAAGGTGTTGTATCACAAACTGCAGCTTCAGCACAAAAAAATTATCATAGAACTACATATTTAAGACCAGGTATAACAAAACTACATATTTAATATTGAAGTTATCAAGAAACTATAGGTTTTAGAGTATAAATCCCTAGCACGACTGATATGTTTGAGCTATAAACATTGTAGTCTTTGTGATTAAATTGGTGCTAAATCTGTAGTTTTATGATACTTTTGTTACTAAATCTGTATTATCGTAGTACATTGACTTAAGGCTGTAATTTTCTGATAGTTTGGTCAAAGTATATATATATATTTTTTTGAAATTTACTCTAAATTATTCGTAAATACAACAAGAATTTCACCTTCATCAAAAGAATATTCCTCAACTGAATGTCCCAATGGACAAAGCCTGCAGAATGAATAGCTTCCAGTCCAGATGCCACTCCAAGCAAGATAGCATCCAACTCACCTTTATTGGATGCTGTTAGTAGCAAAATCAATACCAATCAAAATAAGATTAGATTGGAAACCCTAAAATAAAAAAAGAGCAGTAAAATTTATTTACCTCTGAATCCTTCGAGGTCCTGTTTAGCCCTTTCATAAACTAGAGCATAGTACTCCTCTGTGTCAGCAAAACCCACAAGATTTATGACATTTGCATGTGAAATTGAACTTAGGGCATTGATCTCTTGCTGCAACAAAACAGGGTGCAACAATTTATTGACAGGTCAGAAACTTAATCATTTTTAAATCAAATAATGGTAATTTCTTTTACTGTGTACAGACAACCACAAGCTACCTAGACACATCTTATATAATAATGGAATTCAGGCAATATATATATATATATATCTTTCAAATATGCACAATCTACCCAAACACGCTTGAATAATAATGCAGCAAATGCATTACTGCACCAATTAATTTCATGGCAATTATTACCTTCCACATAATCCGGACATACTCATCCTTCCTTTTAGAAATTTTGATAGCAACTTTTCGAGGGCAATTTGCATAGTTATTCCCTTTATTCCTGCCCTTGTAAACCTGCCCAAAGGCTCCTGGTTTTCCAAGCAACCTCTTCTCTGAGAAACCTTTAGTAAACTTGTGTAAGTCTTCATCACTGAAGTTGATAAGCTCCATCATTGTTAATTCCTGATAAAAAAAATGACAGAAACATAATAAACATAAAGCAAATAGCATGGATAATTTGGGAGACCTAGAGACAGCACAACATTAGAACACAGTAAAGTAAGGGGTGGAAGCCTAGAGATGATTGGATTCCACTTTTCACGATAACTCATACCTATGGTGTAGATGAAGTGTATGGAGGTGAGCTCAGTTGCTCCAAAATCCCACAGTATGTAGCAACGGCGTAACAGCAGAGCAAAAATCCAGAACTCCAGATACAAAATGCTATTGTTTTAACATGGACAACAAATGGGCGAAGGCTACCCCGAGGATTACCCCTCGTAGAAGCCCTCGCCCTTTTGCCCTAGGGGCCAT
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| CDS seq | ATGGCCCCTAGGGCAAAAGGGCGAGGGCTTCTACGAGGGGAATTAACAATGATGGAGCTTATCAACTTCAGTGATGAAGACTTACACAAGTTTACTAAAGGTTTCTCAGAGAAGAGGTTGCTTGGAAAACCAGGAGCCTTTGGGCAGGTTTACAAGGGCAGGAATAAAGGGAATAACTATGCAAATTGCCCTCGAAAAGTTGCTATCAAAATTTCTAAAAGGAAGGATGAGTATGTCCGGATTATGTGGAAGCAAGAGATCAATGCCCTAAGTTCAATTTCACATGCAAATGTCATAAATCTTGTGGGTTTTGCTGACACAGAGGAGTACTATGCTCTAGTTTATGAAAGGGCTAAACAGGACCTCGAAGGATTCAGAGCATCCAATAAAGGTGAGTTGGATGCTATCTTGCTTGGAGTGGCATCTGGACTGGAAGCTATTCATTCTGCAGGCTTTGTCCATTGGGACATTCAGTTGAGGAATATTCTTTTGATGAAGGATAATACAGTTAAAATTGCTGATTTTGGATTGGCCACAAGGAAGGGAGAGAAGATGAGTTTCTTCAAGGATAGAAGATTTGGCATCTTTAATGCAAATGATAAAGAGAGTGCCCAGGAAAAAATTGGTGTCTTCTGTTTTGGAAATCTCATCAGAGAACTGGTTTTACTAGAAAGGAAAGAGTGGAGCCCCACGAAATGTCCCAGGATACTTTTGGCAGATACATGTATTGTTAACAATCCAGATGATCGTCCCTCAATGGCTACTTTGGTTTCAAAATTGAAGGTTCCGTGTTCAGCTATGGTCAATTGGTTACTCAAGCTCGAAAAGTGTGCGTGTATATATAACAACATAGAACTAGAAAACGTGGACACCATTGAAGAGTATGATGTTGTCCTATACGCTCAACATACTACTAGAGTATAA
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| Protein seq | MAPRAKGRGLLRGELTMMELINFSDEDLHKFTKGFSEKRLLGKPGAFGQVYKGRNKGNNYANCPRKVAIKISKRKDEYVRIMWKQEINALSSISHANVINLVGFADTEEYYALVYERAKQDLEGFRASNKGELDAILLGVASGLEAIHSAGFVHWDIQLRNILLMKDNTVKIADFGLATRKGEKMSFFKDRRFGIFNANDKESAQEKIGVFCFGNLIRELVLLERKEWSPTKCPRILLADTCIVNNPDDRPSMATLVSKLKVPCSAMVNWLLKLEKCACIYNNIELENVDTIEEYDVVLYAQHTTRV |
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| Function | Proline-rich receptor-like protein kinase PERK2 [UniProtKB/Swiss-Prot:Q9LK03] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g29510 | LOC_Os11g29510.1 | Chr11 | 17117873 | 17121629 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCCCTAGGGCAAAAGGGCGAGGGCTTCTACGAGGGGAATTAACAATGATGGAGCTTATCAACTTCAGTGATGAAGACTTACACAAGTTTACTAAAGGTTTCTCAGAGAAGAGGTTGCTTGGAAAACCAGGAGCCTTTGGGCAGGTTTACAAGGGCAGGAATAAAGGGAATAACTATGCAAATTGCCCTCGAAAAGTTGCTATCAAAATTTCTAAAAGGAAGGATGAGTATGTCCGGATTATGTGGAAGCAAGAGATCAATGCCCTAAGTTCAATTTCACATGCAAATGTCATAAATCTTGTGGGTTTTGCTGACACAGAGGAGTACTATGCTCTAGTTTATGAAAGGGCTAAACAGGACCTCGAAGGATTCAGAGCATCCAATAAAGGTGAGTTGGATGCTATCTTGCTTGGAGTGGCATCTGGACTGGAAGCTATTCATTCTGCAGGCTTTGTCCATTGGGACATTCAGTTGAGGAATATTCTTTTGATGAAGGATAATACAGTTAAAATTGCTGATTTTGGATTGGCCACAAGGAAGGGAGAGAAGATGAGTTTCTTCAAGGATAGAAGATTTGGCATCTTTAATGCAAATGATAAAGAGAGTGCCCAGGAAAAAATTGGTGTCTTCTGTTTTGGAAATCTCATCAGAGAACTGGTTTTACTAGAAAGGAAAGAGTGGAGCCCCACGAAATGTCCCAGGATACTTTTGGCAGATACATGTATTGTTAACAATCCAGATGATCGTCCCTCAATGGCTACTTTGGTTTCAAAATTGAAGGTTCCGTGTTCAGCTATGGTCAATTGGTTACTCAAGCTCGAAAAGTGTGCGTGTATATATAACAACATAGAACTAGAAAACGTGGACACCATTGAAGAGTATGATGTTGTCCTATACGCTCAACATACTACTAGAGTATAA
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| Protein seq | MAPRAKGRGLLRGELTMMELINFSDEDLHKFTKGFSEKRLLGKPGAFGQVYKGRNKGNNYANCPRKVAIKISKRKDEYVRIMWKQEINALSSISHANVINLVGFADTEEYYALVYERAKQDLEGFRASNKGELDAILLGVASGLEAIHSAGFVHWDIQLRNILLMKDNTVKIADFGLATRKGEKMSFFKDRRFGIFNANDKESAQEKIGVFCFGNLIRELVLLERKEWSPTKCPRILLADTCIVNNPDDRPSMATLVSKLKVPCSAMVNWLLKLEKCACIYNNIELENVDTIEEYDVVLYAQHTTRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0549300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13420 | SBH | 0.937101 | 0.622684 | 0.488386 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0549300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014250 | RBH | 0.0 | 0.0 | 1.418695 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014170 | RBH | 0.0 | 0.0 | 12.353060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014240 | RBH | 5230.645508 | 109.780006 | 1258.480835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0266500 | RBH | 156.615402 | 12.4452725 | 4.343688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0264000 | SBH | 3.831233 | 18.659854 | 0.3127725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014360 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013960 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014170 | RBH | 0.0 | 0.0 | 0.000000 |
