Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0008840 | OGI:11022760 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:7457532-7462964 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagagagcttagaaacattttacaaattaactatctcgaaaatgtcagaacgaaggatgaggctttggaggcgatgctgcataataaaagtcggcttgatcgtttggaactttcctggagttacatagatgacttgcatataaatgacaatttgcatttggaggttctagagggtctcaagccacctcgtgaacttaatgaccttatagttacaggctacagatctccagtatatccaagctggttgctcgaagattcttattttgttaatttaaagacccttgtgcttagtaattgcacttctctggaatgtttaccatccagtgtacagctcatcaagcatttccgtcatatagccctccgcaacatcctgaatctgaagacattaccatgctttccaggaggccttgtatccttaaatatgatgggttgcccgttgcttagatttatttctagggaagaacttggacaggatgtacaacatacagatttgatgaaagtgggcaatttgtcatccacccttgcaaggatcctggaggcaaagagaggatcaaagattagtaaaaaggtcagggacacgttggtgttcgaacattcatctctgaagcagttgatggcattgatggatgatgatatatccgcacaactccaaaccataaaaagtgctatagaaagtgaaagagaggaagtattgttggaagaaaatatcataaaagcatggttgtactgccaagagaagaggacgaaacttatctattcaagacccactgagaatctgttgcttctcccatcatcgattgagaatctctctctttcttcatgcaacctcacagatggagctttagctgtttgccttcaaggactcacctcgctgaaatggttgtctatagagcgaattatgaacttaacttcgttcccatcaccgcaggtgctgcagcgcttgacgatgcttaaaagattatatatccgttcttgctggtgcctcagatcattgggtggcttacgagaggcaatctccctttcagaagttaagatagattcatgcatctcattagagttggtggatgaaaatggaatagctgttatgccatcctctattggaaagctctctctatttggctgcatactaggggccaatttcctcagtactgacttcccacgtctgcgtagcatttccatcacatgctgccgaagctcttcatcatttgctattggtcatctgcgttccctggaatcactctcactgaataacatgccagacttgtgctttcttgaaggcttatcatgtccacatctccaggacatacatctgataaatgttccaaatcttaccgcagagtctttttcccggcatcatgcatggaaatcactcgctattagtagctctgctatgctcagtctcatgctctctataaaggatttcatgcttccagagaaactctgttttgaacaatacgacgagccatccattacatttcaaagctctgcaaatttcacatctatcaagtttctagagttcagggattctaaagtcatgtacctgccaagcagtttgaagaacctgtccagtctggagaggatcaaatttgtcaggatccccaacttatcatctctaccagatttccctaattctatccagcaaattgaaatacaagactgcgagtgcttgaaaagaagctgccaggcacctaatggagaaaactggcaaaagattgagtgcatccgttggaagcttatcgaagtttccaaacctgatgaaagtatagcgtggttcatgtaagttacgatagatttacatctgcaatagttatattttggatcagtcatacaaaaagttaggccttactagtatgtgtgtgtgttggataaaaaactttgagggtatcgctgaacatattcaccgaagattcatcgtttttttggatgggttcaattatgacaaagaaatcattaattgctaatttctgcattaatgcttacatagagactctaacgaatgtttaatggacttattaagtttaaaaatataaattcctgaaataataaacattgatttataattatgcatgtgttacaatattaatgatccaggtctaacaactactagtacaattaattttgttttgaaaatctctacttattccattaagattttattgttctggtcctgtcagacacaggtatgataaagttggaatagctgcctaccctaagaagctacagcctggacaacctgtggtctggtaagtttgtcatttgacactctttatttttcttgggggtgtctaatgatcgaaatgctcctgcaagggcacgatgagttgttcggttgctaatttagtactccataaatattattacctctgtttttcaatgtatgacgccgtccactttttgacaaatgttttgatcatttgtcttatttaaaatttttgtgtaaatataaaaagttttaagtcatgcttaaagaacatttgatgataaatcgagtcacaacaaaataaataatagttatataatttttttgaaaaagacgaatagtcaaatatatcttaaaatatcaacggcgttatatattaaaaaacggagggagtacaacttggcatgctaacactagaggtgcatcattatggtgttacggactcttgttcctgttactgaacaaatgagccattagattttctgggcctatttgagtagatgaaagcctaattttgttgtgtgcggttacatacaaagcatatgaaatatactcccgtcccaaaatataagcattttttatcctgacacggtctccgatatgctactttgaccaacaatatctataaaagtaagatgctttaaataaaaagagttgcatattatgattgttttaataataaatctagtaacatcaattatacatgattgatcttttttttatttttttgctattaatggtcaaaattgaaaatgtttgacttgtcactatgctaaaaatgcttatattttgggatggagggagtaggttcttttaccataatataaggatgcactaaccagtacattgtgtagttgaggtgctgtgatgcaaattactactgtccgtataaggcacaaatcaagtaactgtgtattttcaatgaataagcaaacgctaggaatgactcctttactttttacaggcacgacaagaatcactgagtaattaacaactcatcacaactgaactgccgctgacccgctgtttaaaacccgtaaacagaatcacatctcttgttcgtccatgtctccaggacggcagactgctgctaccgttgcagttggcagcatatgaatcatctttttcctctggatgaaatttcattggggaacaaaatcatttttttccccaggggatgcaaagctcatattctcataaatggttcagtcaaataattaaatagagttttaagttctctaatcctatgaatgtttgtgaatgtcagggcaccagtgcgccatcgcccactcaccgagggctcgccacaccctctctcctctgccaggtgagggatggtgtcgtggcagcaacaacgtcttcgggagaagatgaagcggcgatgttggagaactgggtcgcggggaacggagaactcctggtacgaggcgctcatgttaaactcaaaaagggactcttcctttcttctgagttcaggcaatgcactgctaattgtctattcatatctacgactataagcaccccactacccacttgtatagttgtatttgatggaacagctcttattaaaaggtggcgtaacccaaccaaaatgcagggaatgttcatgcataaggatttactactccgttctagaaagaatccaatcctagcagcgaacctgcgtgtccaggttcgttgctaggattggattctttttggaatggagggggtagaagatatcactatttttataaacttaatcctgaatgaaaagtttcagatctacagatagtgagataaataaccccttcaattggttttgaattttctgacacttcctaattcaggcagggtgcatgagttcgaattcaaatctgcattctctccacaacaataaatgaagagtgaagccatggcgtacgatccaaattcccatgtgttatccttgtcagtactaattggaatttggcaaattcccatgggttccggtactgtgcatgtcagttctcagagatcactatttgctggcaatactttggcaattccattcttgaaataactcggggataattggcatttgttcagatctctgtccaggcatctatcatcatggggctgcagggtgctgtttcacaaactgcactacagcccagacaaccatcgcgtggtaagttcatttggcgctcttgatttttcttgcaatgagatagcctaactttgtgatacgcggtgacgcggtcacatagaaagcatgtgaagtgtaggtaaacatattcctttatcataatattaggatgtactggcaggtatattgtctagttgtggtgctgaaacgatacaaattagaacatacataaactatttacactatactattgtctgatcgaataaagcacaaaccaaacaaatatgcatcacttttttaattttttagacctttttaaatcaatagtttattaatagaccttacaaaattttatttctaagggcctgtttagtatcttcactccttccgttgggttggaatttgccgacattttctatttcagggtacatactatctcccttttttaaatagatgacaccattgatttttaatcaatatttgatcatttatcttatttaaaaatttagtgtaaatatgctaaagtataactcatacttgaattaaatttctttgataataaagcatatcacaacaaaataaattaaatttatttatttattttaaaataagataaatagtcaaacgtcatatttaaagtcaacggtatcatctatttaaaaaatagaggcagtacatttcaatttcaaatctgcactgtctccacaataatgaagtacgatccaaattatgaaattcccatgtgttagtgttagcatcagtccaccatgagatcactctatgcttggcaattccattgcagaaatagctgggtgatactgtaacgctgatgtacttgactatcttttctttttttttcagatgtccgtccaacagtagagagctggtatttcgcaaacaacaaactgcattagaaatgtgaagttgtgtgatttaaatccttagcaaaggtcttacatcttcttactacccatttttttaatgtcccgggcttacatttggttgaactgttgaaggtgcatgcattactccacttggcttcagaaaagtgaacacatacagttatcacattgacgttgccaacatatatctgatgataattaaacaattatcaattatcaatt
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| CDS seq | atgagagagcttagaaacattttacaaattaactatctcgaaaatgtcagaacgaaggatgaggctttggaggcgatgctgcataataaaagtcggcttgatcgtttggaactttcctggagttacatagatgacttgcatataaatgacaatttgcatttggaggttctagagggtctcaagccacctcgtgaacttaatgaccttatagttacaggctacagatctccagtatatccaagctggttgctcgaagattcttattttgttaatttaaagacccttgtgcttagtaattgcacttctctggaatgtttaccatccagtgtacagctcatcaagcatttccgtcatatagccctccgcaacatcctgaatctgaagacattaccatgctttccaggaggccttgtatccttaaatatgatgggttgcccgttgcttagatttatttctagggaagaacttggacaggatgtacaacatacagatttgatgaaagtgggcaatttgtcatccacccttgcaaggatcctggaggcaaagagaggatcaaagattagtaaaaaggtcagggacacgttggtgttcgaacattcatctctgaagcagttgatggcattgatggatgatgatatatccgcacaactccaaaccataaaaagtgctatagaaagtgaaagagaggaagtattgttggaagaaaatatcataaaagcatggttgtactgccaagagaagaggacgaaacttatctattcaagacccactgagaatctgttgcttctcccatcatcgattgagaatctctctctttcttcatgcaacctcacagatggagctttagctgtttgccttcaaggactcacctcgctgaaatggttgtctatagagcgaattatgaacttaacttcgttcccatcaccgcaggtgctgcagcgcttgacgatgcttaaaagattatatatccgttcttgctggtgcctcagatcattgggtggcttacgagaggcaatctccctttcagaagttaagatagattcatgcatctcattagagttggtggatgaaaatggaatagctgttatgccatcctctattggaaagctctctctatttggctgcatactaggggccaatttcctcagtactgacttcccacgtctgcgtagcatttccatcacatgctgccgaagctcttcatcatttgctattggtcatctgcgttccctggaatcactctcactgaataacatgccagacttgtgctttcttgaaggcttatcatgtccacatctccaggacatacatctgataaatgttccaaatcttaccgcagagtctttttcccggcatcatgcatggaaatcactcgctattagtagctctgctatgctcagtctcatgctctctataaaggatttcatgcttccagagaaactctgttttgaacaatacgacgagccatccattacatttcaaagctctgcaaatttcacatctatcaagtttctagagttcagggattctaaagtcatgtacctgccaagcagtttgaagaacctgtccagtctggagaggatcaaatttgtcaggatccccaacttatcatctctaccagatttccctaattctatccagcaaattgaaatacaagactgcgagtgcttgaaaagaagctgccaggcacctaatggagaaaactggcaaaagattgagtgcatccgttggaagcttatcgaagtttccaaacctgatgaaagtatagcgtggttcatacacaggtatgataaagttggaatagctgcctaccctaagaagctacagcctggacaacctgtgggcaccagtgcgccatcgcccactcaccgagggctcgccacaccctctctcctctgccaggtgagggatggtgtcgtggcagcaacaacgtcttcgggagaagatgaagcggcgatgttggagaactgggtcgcggggaacggagaactcctgatctctgtccaggcatctatcatcatggggctgcagggtgctgtttcacaaactgcactacagcccagacaaccatcgcgtgatgtccgtccaacagtagagagctggtatttcgcaaacaacaaactgcattag
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| Protein seq | MRELRNILQINYLENVRTKDEALEAMLHNKSRLDRLELSWSYIDDLHINDNLHLEVLEGLKPPRELNDLIVTGYRSPVYPSWLLEDSYFVNLKTLVLSNCTSLECLPSSVQLIKHFRHIALRNILNLKTLPCFPGGLVSLNMMGCPLLRFISREELGQDVQHTDLMKVGNLSSTLARILEAKRGSKISKKVRDTLVFEHSSLKQLMALMDDDISAQLQTIKSAIESEREEVLLEENIIKAWLYCQEKRTKLIYSRPTENLLLLPSSIENLSLSSCNLTDGALAVCLQGLTSLKWLSIERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREAISLSEVKIDSCISLELVDENGIAVMPSSIGKLSLFGCILGANFLSTDFPRLRSISITCCRSSSSFAIGHLRSLESLSLNNMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKSLAISSSAMLSLMLSIKDFMLPEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYDKVGIAAYPKKLQPGQPVGTSAPSPTHRGLATPSLLCQVRDGVVAATTSSGEDEAAMLENWVAGNGELLISVQASIIMGLQGAVSQTALQPRQPSRDVRPTVESWYFANNKLH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0008840 | OsCMeo_11g0008840.01 | Chr11 | 7457532 | 7462964 | + | NAM | ||
| CDS seq | atgagagagcttagaaacattttacaaattaactatctcgaaaatgtcagaacgaaggatgaggctttggaggcgatgctgcataataaaagtcggcttgatcgtttggaactttcctggagttacatagatgacttgcatataaatgacaatttgcatttggaggttctagagggtctcaagccacctcgtgaacttaatgaccttatagttacaggctacagatctccagtatatccaagctggttgctcgaagattcttattttgttaatttaaagacccttgtgcttagtaattgcacttctctggaatgtttaccatccagtgtacagctcatcaagcatttccgtcatatagccctccgcaacatcctgaatctgaagacattaccatgctttccaggaggccttgtatccttaaatatgatgggttgcccgttgcttagatttatttctagggaagaacttggacaggatgtacaacatacagatttgatgaaagtgggcaatttgtcatccacccttgcaaggatcctggaggcaaagagaggatcaaagattagtaaaaaggtcagggacacgttggtgttcgaacattcatctctgaagcagttgatggcattgatggatgatgatatatccgcacaactccaaaccataaaaagtgctatagaaagtgaaagagaggaagtattgttggaagaaaatatcataaaagcatggttgtactgccaagagaagaggacgaaacttatctattcaagacccactgagaatctgttgcttctcccatcatcgattgagaatctctctctttcttcatgcaacctcacagatggagctttagctgtttgccttcaaggactcacctcgctgaaatggttgtctatagagcgaattatgaacttaacttcgttcccatcaccgcaggtgctgcagcgcttgacgatgcttaaaagattatatatccgttcttgctggtgcctcagatcattgggtggcttacgagaggcaatctccctttcagaagttaagatagattcatgcatctcattagagttggtggatgaaaatggaatagctgttatgccatcctctattggaaagctctctctatttggctgcatactaggggccaatttcctcagtactgacttcccacgtctgcgtagcatttccatcacatgctgccgaagctcttcatcatttgctattggtcatctgcgttccctggaatcactctcactgaataacatgccagacttgtgctttcttgaaggcttatcatgtccacatctccaggacatacatctgataaatgttccaaatcttaccgcagagtctttttcccggcatcatgcatggaaatcactcgctattagtagctctgctatgctcagtctcatgctctctataaaggatttcatgcttccagagaaactctgttttgaacaatacgacgagccatccattacatttcaaagctctgcaaatttcacatctatcaagtttctagagttcagggattctaaagtcatgtacctgccaagcagtttgaagaacctgtccagtctggagaggatcaaatttgtcaggatccccaacttatcatctctaccagatttccctaattctatccagcaaattgaaatacaagactgcgagtgcttgaaaagaagctgccaggcacctaatggagaaaactggcaaaagattgagtgcatccgttggaagcttatcgaagtttccaaacctgatgaaagtatagcgtggttcatacacaggtatgataaagttggaatagctgcctaccctaagaagctacagcctggacaacctgtgggcaccagtgcgccatcgcccactcaccgagggctcgccacaccctctctcctctgccaggtgagggatggtgtcgtggcagcaacaacgtcttcgggagaagatgaagcggcgatgttggagaactgggtcgcggggaacggagaactcctgatctctgtccaggcatctatcatcatggggctgcagggtgctgtttcacaaactgcactacagcccagacaaccatcgcgtgatgtccgtccaacagtagagagctggtatttcgcaaacaacaaactgcattag
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| Protein seq | MRELRNILQINYLENVRTKDEALEAMLHNKSRLDRLELSWSYIDDLHINDNLHLEVLEGLKPPRELNDLIVTGYRSPVYPSWLLEDSYFVNLKTLVLSNCTSLECLPSSVQLIKHFRHIALRNILNLKTLPCFPGGLVSLNMMGCPLLRFISREELGQDVQHTDLMKVGNLSSTLARILEAKRGSKISKKVRDTLVFEHSSLKQLMALMDDDISAQLQTIKSAIESEREEVLLEENIIKAWLYCQEKRTKLIYSRPTENLLLLPSSIENLSLSSCNLTDGALAVCLQGLTSLKWLSIERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREAISLSEVKIDSCISLELVDENGIAVMPSSIGKLSLFGCILGANFLSTDFPRLRSISITCCRSSSSFAIGHLRSLESLSLNNMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKSLAISSSAMLSLMLSIKDFMLPEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYDKVGIAAYPKKLQPGQPVGTSAPSPTHRGLATPSLLCQVRDGVVAATTSSGEDEAAMLENWVAGNGELLISVQASIIMGLQGAVSQTALQPRQPSRDVRPTVESWYFANNKLH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0245800 | SBH | 0.869514 | 0.961491 | 0.321152 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14110 | SBH | 0.588011 | 0.646683 | 0.082671 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0245800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008930 | SBH | 0.307674 | 4.862824 | 3.876990 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008820 | SBH | 0.243678 | 1.587239 | 1.640405 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008830 | RBH | 0.523620 | 1.979363 | 0.271127 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008670 | SBH | 0.060726 | 0.116506 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008760 | RBH | 0.000000 | 0.413422 | 2.535330 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0119100 | RBH | 0.314439 | 1.1513505 | 0.398002 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008790 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0123100 | RBH | 2.261159 | 13.5600755 | 7.484368 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008940 | RBH | 0.037241 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008840 | SBH | 1.968439 | 11.866999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008720 | SBH | 0.204565 | 0.0 | 0.068740 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008860 | SBH | 0.024664 | 0.578388 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008880 | SBH | 0.187204 | 0.689978 | 0.599998 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008770 | SBH | 0.448215 | 13.690619 | 2.578554 |
